Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0782200-03
CDS Infomation

cds chromosome:IRGSP-1.0:2:33159684:33166817:-1 gene:Os02g0782200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to NOT2/NOT3/NOT5 family protein, expressed. (Os02t0782200-01);NOT2/NOT3/NOT5 domain containing protein. (Os02t0782200-02);Similar to NOT2/NOT3/NOT5 family protein, expressed. (Os02t0782200-03)
Sequence

AGTAGAGGATTGAATGTTGGTGGAGGTCCAGCATTTAGTAGTAGCCTGAATATTGGTGGT
ACCATTCAAGGCTTATCCTCAAACCTGGGTGCTGGTGGTAGTCGTAATTCTGTTCCTGGG
ATGTCAGTATCTCCATCTTTGGGAAATTTGGGTCCTAGGATCACTGGTTCTGTAGGAAAT
ATTGTGGGTGGAAGTAACATTGGAAGGAATATAAGCTCTGGTGGATTATCTGTGCCAAGC
ATAGCATCACGCATGAATTTGAGTGGCAATGTTGGCAGTGGCGGTCTGAATGTCCAAGGA
TCCAGCAGGATGATGAATGGCATTCTTCAGCAAGGATCACCTCAAATGCTGAACATGATG
GGGAGTTTATATCCAACATCTGGAGGTTCTTTATCTCAGAACCAAATACAAGGAGGAAAT
AATTCCCTTGGTTCTATGGGGATGCTGCATGATGCCAGTGACGGTGCTCCATTTGACATG
AGTGATTTTCCCCAGCTGACTGGTCGACCTAGTTCTGCGGGTGGTCCACAAGGACAATAT
GGCTCCCTACGGAAGCAAGGAGTTGGTGTTAACACCATTGTTCAGCAAAACCAGGAATTC
AGCATTCAAAATGAAGACTTCCCGGCTTTACCTGGATACAAAGGCAACACTACAGATTAT
GCTATGGAGTTGCATCACAAGGAACAACTTCATGATAATGTACCTGTTATGCAAGCGCAA
CAATATCCGATGTCAAGATCAGTTGGCTTTAACTTAGGAAGTAACTACCCACCAAATCGT
CAGCAACACCAGCAAGGTGCTAATTCAGTTCAGAATGCTGGTCCCCCAAATATCGGACTA
AGACCACTAAATTCTCCAAATCAAACTTCTAGTTTGGGATCATATGAGCAACTTATCCAG
CAATACCAGCAACCTCAGGCTCAAAATCCTTTCAGATTGCAGCAGGTGTCTTCAGCTACC
CAGTCATATAGGGATCAGAGTCTAAAGTCCATCCAGGGGGGCCAAACACCATCTGATCCA
TATGGCTTGATGGGATTGCTAGGAGTTATCAGGATGAATGATGTTGACTTATCATCTCTT
GCTTTAGGAATAGATTTGACAACATTGGGTTTAAACTTGAACTCACCAGACAATCTGTAC
AAGACATTTGGCTCTCCATGGTCAAACGAGCCAGCAAAAGGAGAACCTGAGTTTCATACT
CCAGCTTGCTACTCCGCTGAGCAACCTCCACCACTACAACCTATACATTTTCAGAAATTC
CAGACGCCAACACTGTTTTACATCTTCTATAGCATGCCAAGGGATGAAGCTCAGCTATGT
GCTGCTAGTGAGCTGTATACTCGAGGATGGTTCTACCATAAAGAAGTGCGTGTGTGGCTC
ACCAGAATTCCAAATGTTGAGCCTCTGGTCAAAACACCTCATTATGAACGAGGATCTTAT
GGTTGCTTTGATCCAAACAACTGGGAGACAATCCGCAAGGACAACTTTGTTCTCCATTAT
GATCAAATAGAGAAGAAGCCAGCTATCCCTTCATCCCAAAACGTTAGGTGA

Peptide Sequence

PEP ID

Os02t0782200-03
PEP Infomation

pep chromosome:IRGSP-1.0:2:33159684:33166817:-1 gene:Os02g0782200 transcript:Os02t0782200-03 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to NOT2/NOT3/NOT5 family protein, expressed. (Os02t0782200-01);NOT2/NOT3/NOT5 domain containing protein. (Os02t0782200-02);Similar to NOT2/NOT3/NOT5 family protein, expressed. (Os02t0782200-03)
Sequence

SRGLNVGGGPAFSSSLNIGGTIQGLSSNLGAGGSRNSVPGMSVSPSLGNLGPRITGSVGN
IVGGSNIGRNISSGGLSVPSIASRMNLSGNVGSGGLNVQGSSRMMNGILQQGSPQMLNMM
GSLYPTSGGSLSQNQIQGGNNSLGSMGMLHDASDGAPFDMSDFPQLTGRPSSAGGPQGQY
GSLRKQGVGVNTIVQQNQEFSIQNEDFPALPGYKGNTTDYAMELHHKEQLHDNVPVMQAQ
QYPMSRSVGFNLGSNYPPNRQQHQQGANSVQNAGPPNIGLRPLNSPNQTSSLGSYEQLIQ
QYQQPQAQNPFRLQQVSSATQSYRDQSLKSIQGGQTPSDPYGLMGLLGVIRMNDVDLSSL
ALGIDLTTLGLNLNSPDNLYKTFGSPWSNEPAKGEPEFHTPACYSAEQPPPLQPIHFQKF
QTPTLFYIFYSMPRDEAQLCAASELYTRGWFYHKEVRVWLTRIPNVEPLVKTPHYERGSY
GCFDPNNWETIRKDNFVLHYDQIEKKPAIPSSQNVR

Transcript Sequence

Transcript ID

Os02t0782200-03
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:33159684:33166817:-1 gene:Os02g0782200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to NOT2/NOT3/NOT5 family protein, expressed. (Os02t0782200-01);NOT2/NOT3/NOT5 domain containing protein. (Os02t0782200-02);Similar to NOT2/NOT3/NOT5 family protein, expressed. (Os02t0782200-03)
Sequence

TAGTAGAGGATTGAATGTTGGTGGAGGTCCAGCATTTAGTAGTAGCCTGAATATTGGTGG
TACCATTCAAGGCTTATCCTCAAACCTGGGTGCTGGTGGTAGTCGTAATTCTGTTCCTGG
GATGTCAGTATCTCCATCTTTGGGAAATTTGGGTCCTAGGATCACTGGTTCTGTAGGAAA
TATTGTGGGTGGAAGTAACATTGGAAGGAATATAAGCTCTGGTGGATTATCTGTGCCAAG
CATAGCATCACGCATGAATTTGAGTGGCAATGTTGGCAGTGGCGGTCTGAATGTCCAAGG
ATCCAGCAGGATGATGAATGGCATTCTTCAGCAAGGATCACCTCAAATGCTGAACATGAT
GGGGAGTTTATATCCAACATCTGGAGGTTCTTTATCTCAGAACCAAATACAAGGAGGAAA
TAATTCCCTTGGTTCTATGGGGATGCTGCATGATGCCAGTGACGGTGCTCCATTTGACAT
GAGTGATTTTCCCCAGCTGACTGGTCGACCTAGTTCTGCGGGTGGTCCACAAGGACAATA
TGGCTCCCTACGGAAGCAAGGAGTTGGTGTTAACACCATTGTTCAGCAAAACCAGGAATT
CAGCATTCAAAATGAAGACTTCCCGGCTTTACCTGGATACAAAGGCAACACTACAGATTA
TGCTATGGAGTTGCATCACAAGGAACAACTTCATGATAATGTACCTGTTATGCAAGCGCA
ACAATATCCGATGTCAAGATCAGTTGGCTTTAACTTAGGAAGTAACTACCCACCAAATCG
TCAGCAACACCAGCAAGGTGCTAATTCAGTTCAGAATGCTGGTCCCCCAAATATCGGACT
AAGACCACTAAATTCTCCAAATCAAACTTCTAGTTTGGGATCATATGAGCAACTTATCCA
GCAATACCAGCAACCTCAGGCTCAAAATCCTTTCAGATTGCAGCAGGTGTCTTCAGCTAC
CCAGTCATATAGGGATCAGAGTCTAAAGTCCATCCAGGGGGGCCAAACACCATCTGATCC
ATATGGCTTGATGGGATTGCTAGGAGTTATCAGGATGAATGATGTTGACTTATCATCTCT
TGCTTTAGGAATAGATTTGACAACATTGGGTTTAAACTTGAACTCACCAGACAATCTGTA
CAAGACATTTGGCTCTCCATGGTCAAACGAGCCAGCAAAAGGAGAACCTGAGTTTCATAC
TCCAGCTTGCTACTCCGCTGAGCAACCTCCACCACTACAACCTATACATTTTCAGAAATT
CCAGACGCCAACACTGTTTTACATCTTCTATAGCATGCCAAGGGATGAAGCTCAGCTATG
TGCTGCTAGTGAGCTGTATACTCGAGGATGGTTCTACCATAAAGAAGTGCGTGTGTGGCT
CACCAGAATTCCAAATGTTGAGCCTCTGGTCAAAACACCTCATTATGAACGAGGATCTTA
TGGTTGCTTTGATCCAAACAACTGGGAGACAATCCGCAAGGACAACTTTGTTCTCCATTA
TGATCAAATAGAGAAGAAGCCAGCTATCCCTTCATCCCAAAACGTTAGGTGAAACATTTC
TTATACCTCCTGGCTCAAGTTTTATCCTTTTTTCTCAAGGGGAGGAAGAAATTTGTGCTT
ACGCTAAGAGCAGTGTCATGACCTAACTCTGAGTGAGAACGCAGGGCCATGCCGATCTGC
AGAGGGGAGGCTGCAAAACAAAAGCGGGAATGCCTGCTTAACCCTTGTAATTAGATTATA
GTGGTGAAGTTTTCCTTTAATCGTTTGTAGATTGCACTCTCAGCAACATCTCCAGGTGAC
CAACTTTTAGGAATAGCAAGTCTTAAACATGCTTTTTTACCGTTAAAGCTTTCGGTGTCG
AAACGTAGTTGGCAAATGCACATATCGGCGTTGGTGTTTGCCCTTTTACCTTAAAACAAA
GTACAATGTGGGCATTAGGCGCCAGATTGATTTGCTTAATTTTGGCAGTCTTAAAACCTA
GGCATGCTTAATTTGCTT