Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0780600-02
CDS Infomation

cds chromosome:IRGSP-1.0:2:33073178:33076881:1 gene:Os02g0780600 gene_biotype:protein_coding transcript_biotype:protein_coding description:mRNA capping enzyme, large subunit domain containing protein. (Os02t0780600-01);mRNA capping enzyme, large subunit domain containing protein. (Os02t0780600-02)
Sequence

ATGGCAGTGACACCGCATCATCGGCTATATGAATTTGCTAAGACTGCCCTTATCAAGATT
TTCGCATTCCCTTATGCCACGGTCTGTGACCTGTATTGTGATGGTGGGGTTGATACAGAC
AAGTGGGGCGATGCACAAATTGGTCACTACATAGGGATTGATGCCTCTGCATCAGGTGTC
AATGATGCTCGTGAGCTGTGGGAGAGCAGAAAGAAACTTTTCACGTCTGAGTTCATCGAG
TTAGATCCTTCTGCTGATGACTTTGAAGCTCAAATGCAAGAAAAGGGCATCCAAGCAGAT
ATAGTTTGTTGTATGCAGCATTTGCAGTTATGTTTCGAGAGTGAGGAACATGCTCAAAAG
CTTCTGAATAATGTATCATCTTTACTCAAACCTGGAGGCTATTTTGTTGGCATAATTCCT
GATTCATCTACAATATGGACAAAATATCAAAAGAATGTCGAGGCTTCACATAATAAGGGT
CTGAAGACTGTTCCAAATAGCATTCGCTCAGAGAACTATGTCATCACCTTTGAAGTTGAG
GAAGAAAAGTTTCCTTTCTTTGGAAAAAAGTACCAACTCAAATTTGCAAATGAATCAATG
TTCGAGAATCACTGCCTGGTCCACTTTCCCAGCTTTATGAGATTAGCAAGGGAGGCAGGA
CTTGAATATGTAGAGATCCAGAATTTAACCGAGTTTTACGATGATAACAGAACTCAGTTT
GCTCCATTGCTTGGTGGTTATGGTTCCAGTTTGGTGGATCCGCGTGGAAAGCTTGTCGCT
CGTTCGTTTGATATTTTAGGCTTGTATTCAACTTTTGTTTTCCAGAAGCCTGACCCAGAT
GCAATGCCACCAATTGTAACACCCGAATTGCATGATCCTGAGAATGATCAAGAAGAGGAA
TGGCTCTGGACGCAGCAGGCATCAATGGACGATGGAAGGGTCTCACGTACTGATATACTT
CCTCCTGCGGATAATGAGAAAGGCATCCTTGGTCCTGGACCTGCAGATATGAGGCTTTAA

Peptide Sequence

PEP ID

Os02t0780600-02
PEP Infomation

pep chromosome:IRGSP-1.0:2:33073178:33076881:1 gene:Os02g0780600 transcript:Os02t0780600-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:mRNA capping enzyme, large subunit domain containing protein. (Os02t0780600-01);mRNA capping enzyme, large subunit domain containing protein. (Os02t0780600-02)
Sequence

MAVTPHHRLYEFAKTALIKIFAFPYATVCDLYCDGGVDTDKWGDAQIGHYIGIDASASGV
NDARELWESRKKLFTSEFIELDPSADDFEAQMQEKGIQADIVCCMQHLQLCFESEEHAQK
LLNNVSSLLKPGGYFVGIIPDSSTIWTKYQKNVEASHNKGLKTVPNSIRSENYVITFEVE
EEKFPFFGKKYQLKFANESMFENHCLVHFPSFMRLAREAGLEYVEIQNLTEFYDDNRTQF
APLLGGYGSSLVDPRGKLVARSFDILGLYSTFVFQKPDPDAMPPIVTPELHDPENDQEEE
WLWTQQASMDDGRVSRTDILPPADNEKGILGPGPADMRL

Transcript Sequence

Transcript ID

Os02t0780600-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:33073178:33076881:1 gene:Os02g0780600 gene_biotype:protein_coding transcript_biotype:protein_coding description:mRNA capping enzyme, large subunit domain containing protein. (Os02t0780600-01);mRNA capping enzyme, large subunit domain containing protein. (Os02t0780600-02)
Sequence

CTCTCTCTCTCTCTGACTCTTGACTCTCTTTCGCTGTGCCTGTGAGCAACGCTGTTCTCC
TCCCTCCGGCCTCCGGCCTCCGCTCTCCGCCTCGCCTCGCCGCCCGATCCGCGCGTGCCT
TCTCCTCCTCCCCCTTCGTTGCGTGCTCGGCCTCCGCACCCACCCTCCGCTTCGATCAGC
CGCAGCCCGACTCCCCCCTGCTTCCCCGCCTACTCCGCGCCGCCCGCCTTTGGCGCTCGC
CGCCGCGGTCGCCCCCTTCCGCGGCTCGTCGCTGGGTTCTCGTCCAGCACGCGGGTGCCG
GTTGCTTCTTCTTCTTCCTCCTCATCCGGTCGCCGCGTCACCAGGGTTAGTGCATGGCAG
TGACACCGCATCATCGGCTATATGAATTTGCTAAGACTGCCCTTATCAAGATTTTCGCAT
TCCCTTATGCCACGGTCTGTGACCTGTATTGTGATGGTGGGGTTGATACAGACAAGTGGG
GCGATGCACAAATTGGTCACTACATAGGGATTGATGCCTCTGCATCAGGTGTCAATGATG
CTCGTGAGCTGTGGGAGAGCAGAAAGAAACTTTTCACGTCTGAGTTCATCGAGTTAGATC
CTTCTGCTGATGACTTTGAAGCTCAAATGCAAGAAAAGGGCATCCAAGCAGATATAGTTT
GTTGTATGCAGCATTTGCAGTTATGTTTCGAGAGTGAGGAACATGCTCAAAAGCTTCTGA
ATAATGTATCATCTTTACTCAAACCTGGAGGCTATTTTGTTGGCATAATTCCTGATTCAT
CTACAATATGGACAAAATATCAAAAGAATGTCGAGGCTTCACATAATAAGGGTCTGAAGA
CTGTTCCAAATAGCATTCGCTCAGAGAACTATGTCATCACCTTTGAAGTTGAGGAAGAAA
AGTTTCCTTTCTTTGGAAAAAAGTACCAACTCAAATTTGCAAATGAATCAATGTTCGAGA
ATCACTGCCTGGTCCACTTTCCCAGCTTTATGAGATTAGCAAGGGAGGCAGGACTTGAAT
ATGTAGAGATCCAGAATTTAACCGAGTTTTACGATGATAACAGAACTCAGTTTGCTCCAT
TGCTTGGTGGTTATGGTTCCAGTTTGGTGGATCCGCGTGGAAAGCTTGTCGCTCGTTCGT
TTGATATTTTAGGCTTGTATTCAACTTTTGTTTTCCAGAAGCCTGACCCAGATGCAATGC
CACCAATTGTAACACCCGAATTGCATGATCCTGAGAATGATCAAGAAGAGGAATGGCTCT
GGACGCAGCAGGCATCAATGGACGATGGAAGGGTCTCACGTACTGATATACTTCCTCCTG
CGGATAATGAGAAAGGCATCCTTGGTCCTGGACCTGCAGATATGAGGCTTTAAGTTCACT
GAACAACTGGATATAGGCTCACTGCTGGAGTTGGAGCAACGATGCTCCTGCAAAGCTGCA
ATTGGTGGTTTATGGATGCATACATATGCATGATGCTCACGTAGTTTCTAAATTTATTTA
GGCTCTACCTGTAAAAAGAAAACCTTTCAGTTATTCTTGAGAAGATAGAATTAGCACC