Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0778500-01
CDS Infomation

cds chromosome:IRGSP-1.0:2:32957456:32961345:1 gene:Os02g0778500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Chalcone isomerase domain containing protein. (Os02t0778500-01)
Sequence

ATGAAACCGGACTGGTCAATTTTCTCCAAGTTTGACCACAATGGAGGGTACCTGCATAAA
TTCCCAATAGATTCTCCAATATCTCATGATATTGGATTAGGATTGATATCACATTTTGGA
ACCTTAGTCGAGAGTTCCTTTCAGCATCCAAGGCATATATGTTCTACAGGGAATGGAGCA
GTTCAGGAAGCATTCAGTTGCTTCAACAAGTTTGCTGGTGCTTTCTATTTCTGGCTTTCT
AGAGCATCAAATCCCAAGATTTTCCACAGGTTGTCAGCTATTGCAGGCTCAAGTTCAAGA
GCCTGCCAGTCGCAAATAAAGCAAGTGACTTCTTGCATGCAGCATTTGGCCGGATTGCGT
TTTGGTTCTCAAGTTAGAGAAGAGCACGCTATACAAATTCTTTTAGCAAAGCTTGCTAAT
GCAACATTTGGGCGACTGTGGAACGAGGTGGAGGAGCGCCATGCCTGTAACATTCTTATG
TTAGCTGCTGCTACTGTACCACCATTTGAAAACATATCGCCGAAGATGCTTGCAGACTCA
ATGACATTGGGAAGAGATAATGGTCGTACCAGAGAACCTGTTGATCAGCATTCTTTGGAG
GAAAACCATTCAGGCTGTACTTGTGTTGCTGTGCCAAGAATAATTTTACCAGAAGACGCA
ACTGAACCAAAAACTGGGATAAAGTTCCCTACTCTTCTCGAGGATAATTCAAATCCAACT
TCAGAGGTGCTCGTCGGGATGGGCTTTAGAAGCATGCGAATAATGAGGGTCAAAAACCTG
AATCTCTATGCCTTTGGATTATATATACAACCAGATTCTATTTGCAAAAGGCTGAGCCCA
AAGTATGCTTCTGTTCCAGTTTCTGAACTGAAGGACCACCCAGATTTCTATGAAGATCTT
TTGAGGGAAAATATTCATATGACAGTCAGGCTGATAGTTAGCTACAATGGTCTTAGCATT
GGCACAGTGCGGGATGCATTTGAGAAGTCCCTTTGCTTCCGATTGCAGAAGATGAATCCT
AATACTGATTATCATTGCTTGAAGACGTTTGGTTCTTATTTTAGTGAAGATATTTGTATA
CCTGCGGGTACAAAGATCGACTTCCGGCAAACCTCTGATGGCCAGCTCATAACTGAAATT
GATGGCAAACAAATTGGTGCTGTCCAGAGCAAAGATCTTTGCAGGGCTTTCTTCGATATG
TATATTGGTGATCCACCTGTTTCAGTCGAGACCAAACAAGACATTGCACAGAATGTTGGT
GGACTCATTAGAAGATGTTATTGA

Peptide Sequence

PEP ID

Os02t0778500-01
PEP Infomation

pep chromosome:IRGSP-1.0:2:32957456:32961345:1 gene:Os02g0778500 transcript:Os02t0778500-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Chalcone isomerase domain containing protein. (Os02t0778500-01)
Sequence

MKPDWSIFSKFDHNGGYLHKFPIDSPISHDIGLGLISHFGTLVESSFQHPRHICSTGNGA
VQEAFSCFNKFAGAFYFWLSRASNPKIFHRLSAIAGSSSRACQSQIKQVTSCMQHLAGLR
FGSQVREEHAIQILLAKLANATFGRLWNEVEERHACNILMLAAATVPPFENISPKMLADS
MTLGRDNGRTREPVDQHSLEENHSGCTCVAVPRIILPEDATEPKTGIKFPTLLEDNSNPT
SEVLVGMGFRSMRIMRVKNLNLYAFGLYIQPDSICKRLSPKYASVPVSELKDHPDFYEDL
LRENIHMTVRLIVSYNGLSIGTVRDAFEKSLCFRLQKMNPNTDYHCLKTFGSYFSEDICI
PAGTKIDFRQTSDGQLITEIDGKQIGAVQSKDLCRAFFDMYIGDPPVSVETKQDIAQNVG
GLIRRCY

Transcript Sequence

Transcript ID

Os02t0778500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:32957456:32961345:1 gene:Os02g0778500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Chalcone isomerase domain containing protein. (Os02t0778500-01)
Sequence

GGGCGAGTAAATACGGAAACGAAGCCGCTTGCTTTCGGTTTCCTCCTCCCCCATTTCCTT
GGATTTTGCGAGGTTTCCTCTTCCTCCACGCTCTCGAATCCGAGCAGAGAAGAAGCACCA
GCCGGGGAAGGCACGGGAACCCTAGGTTGGCTGCGCCGCCGCACGCACGCACCCGCTCCC
TTTCGTGCTGCTGCTGCTGCTGTTGTTGCCGCCGCCTGCATCGTCCCCGATCCGCCGGCC
AGCCAGCTAGCTAGCGAGGGAGGCCAGGTTATACTGGGCTTTCCTCCTGATAAACTCGTT
CTAAAGACATTCGGTGTTGCCATAGTTTTCCAAGTGAACTCACTATGAAACCGGACTGGT
CAATTTTCTCCAAGTTTGACCACAATGGAGGGTACCTGCATAAATTCCCAATAGATTCTC
CAATATCTCATGATATTGGATTAGGATTGATATCACATTTTGGAACCTTAGTCGAGAGTT
CCTTTCAGCATCCAAGGCATATATGTTCTACAGGGAATGGAGCAGTTCAGGAAGCATTCA
GTTGCTTCAACAAGTTTGCTGGTGCTTTCTATTTCTGGCTTTCTAGAGCATCAAATCCCA
AGATTTTCCACAGGTTGTCAGCTATTGCAGGCTCAAGTTCAAGAGCCTGCCAGTCGCAAA
TAAAGCAAGTGACTTCTTGCATGCAGCATTTGGCCGGATTGCGTTTTGGTTCTCAAGTTA
GAGAAGAGCACGCTATACAAATTCTTTTAGCAAAGCTTGCTAATGCAACATTTGGGCGAC
TGTGGAACGAGGTGGAGGAGCGCCATGCCTGTAACATTCTTATGTTAGCTGCTGCTACTG
TACCACCATTTGAAAACATATCGCCGAAGATGCTTGCAGACTCAATGACATTGGGAAGAG
ATAATGGTCGTACCAGAGAACCTGTTGATCAGCATTCTTTGGAGGAAAACCATTCAGGCT
GTACTTGTGTTGCTGTGCCAAGAATAATTTTACCAGAAGACGCAACTGAACCAAAAACTG
GGATAAAGTTCCCTACTCTTCTCGAGGATAATTCAAATCCAACTTCAGAGGTGCTCGTCG
GGATGGGCTTTAGAAGCATGCGAATAATGAGGGTCAAAAACCTGAATCTCTATGCCTTTG
GATTATATATACAACCAGATTCTATTTGCAAAAGGCTGAGCCCAAAGTATGCTTCTGTTC
CAGTTTCTGAACTGAAGGACCACCCAGATTTCTATGAAGATCTTTTGAGGGAAAATATTC
ATATGACAGTCAGGCTGATAGTTAGCTACAATGGTCTTAGCATTGGCACAGTGCGGGATG
CATTTGAGAAGTCCCTTTGCTTCCGATTGCAGAAGATGAATCCTAATACTGATTATCATT
GCTTGAAGACGTTTGGTTCTTATTTTAGTGAAGATATTTGTATACCTGCGGGTACAAAGA
TCGACTTCCGGCAAACCTCTGATGGCCAGCTCATAACTGAAATTGATGGCAAACAAATTG
GTGCTGTCCAGAGCAAAGATCTTTGCAGGGCTTTCTTCGATATGTATATTGGTGATCCAC
CTGTTTCAGTCGAGACCAAACAAGACATTGCACAGAATGTTGGTGGACTCATTAGAAGAT
GTTATTGAAAGGCATAATTAAACGACAGACTGGTCGGAATTATTTCATTCTTCGATACAA
GGATACTAGGGTGAGGGGGAAGCATATACAAAGACAGGACTAGGAGGAGAGGATGAACTG
TATGTATAGTGATAGATCAACCTGTAAACTAAACAGAGCCTTAGCATCTTTCTCCGGAGC
AATTGCCTCCATGCTTTTCATATGGGTTGGCTTTGGCTATTTCCTGGCCACTGTATCATG
TGCAATGATCCAGCCAGACAATGTAAAAGAATGCTTCCTTCCCCCATCTAAAATGAGGGA
CACCAGCTTTGCTGGTTTAGATTAGGCCATAGTAGTGGTGCTGAATATAAATTGTGTACT
AGTGTTGAGATTAAACAGCAAGTAGTGTACTAGTGTCACTTTTC