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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0762300-01
CDS Infomation

cds chromosome:IRGSP-1.0:2:32099098:32102893:-1 gene:Os02g0762300 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:NCS6 description:2-thiocytidine tRNA biosynthesis protein, TtcA domain containing protein. (Os02t0762300-01)
Sequence

ATGGACTCTGCCGTTGATGGCCCGAGACAACCTCCGGCTAGGGCGGGGAGCCGCCTCTGC
ACACGCTGCGGCGAGCGGAAGGCCGCCCTCAAGCGTCCCAAAACCTTAGAGCAGATATGT
AGGGAATGCTTCTATGTTGTCTTTGAGGATGAGATCCATCAGACTATTGTTGACAATAAT
TTGTTTAAACCTGGTGATCGTGTGGCCATTGGAGCTTCTGGTGGAAAAGATTCAACCGTG
CTCGCATATGTGCTATCAGAGTTAAATCGTCGTCACAAATATTGCCTTGATTTGTTTCTC
TTATCTGTGGATGAAGGAATTACTGGTTATAGAGACGACTCACTAGAAACTGTTAAAAGG
AATGAAATACAGTATGGCCTGCCATTGAAAATAGTTTCCTATAAGGACCTCTATGGCTGG
ACAATGGATGATATTGTGAAAGCAATTGGCCTAAAAAATAACTGTACCTTTTGTGGTGTT
TTTCGACGTCAGGCACTGGACCGAGGTGCTGCTCTCTTAAAAGTTGACAAGATTGTGACT
GGACATAATGCTGATGACATTGCAGAAACTGTGTTATTGAATATATTACGTGGTGATATT
GCACGGTTAAGTAGATGTACCTTTATAACTACTGGTGAAGATGGGCCAATCCCAAGATGC
AAGCCTTTCAAATACACCTACGAGAAGGAGATTGTTATGTATGCATATTTCAAAAAGCTG
GACTACTTCTCCACAGAATGCATATATTCACCAAATGCATACCGTGGATTTGCTCGCGAA
TTTATTAAAGATCTGGAAAGGATGAGACCTAGAGCTATACTGGACATCATAAAATCAGGT
GAGAATTTTAGGATCTCCACAACAACAAGGATGCCAGAGCAAGGAACATGTGAACGTTGC
GGCTACATTTCTAGTCAGAAATTATGCAAAGCATGTGTCTTGCTGGACGGATTGAATCGA
GGCTTACCAAAACTAGGCATAGGCAGGACCAAAGGCATTGCTGGAGGTGATGGTGACTGT
GAGCAGCAAGCCACACGTTCGGAGAGGAACAGATCGAGTCTGCAAGGAAAACACGGGAAC
TTCGACTTCTAG

Peptide Sequence

PEP ID

Os02t0762300-01
PEP Infomation

pep chromosome:IRGSP-1.0:2:32099098:32102893:-1 gene:Os02g0762300 transcript:Os02t0762300-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:NCS6 description:2-thiocytidine tRNA biosynthesis protein, TtcA domain containing protein. (Os02t0762300-01)
Sequence

MDSAVDGPRQPPARAGSRLCTRCGERKAALKRPKTLEQICRECFYVVFEDEIHQTIVDNN
LFKPGDRVAIGASGGKDSTVLAYVLSELNRRHKYCLDLFLLSVDEGITGYRDDSLETVKR
NEIQYGLPLKIVSYKDLYGWTMDDIVKAIGLKNNCTFCGVFRRQALDRGAALLKVDKIVT
GHNADDIAETVLLNILRGDIARLSRCTFITTGEDGPIPRCKPFKYTYEKEIVMYAYFKKL
DYFSTECIYSPNAYRGFAREFIKDLERMRPRAILDIIKSGENFRISTTTRMPEQGTCERC
GYISSQKLCKACVLLDGLNRGLPKLGIGRTKGIAGGDGDCEQQATRSERNRSSLQGKHGN
FDF

Transcript Sequence

Transcript ID

Os02t0762300-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:32099098:32102893:-1 gene:Os02g0762300 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:NCS6 description:2-thiocytidine tRNA biosynthesis protein, TtcA domain containing protein. (Os02t0762300-01)
Sequence

GAAGCATCGACGCCGAACGGCCGAAGCGCCGACCCCTCGACACGCTGTCCCCGGTCGCGC
CTCGCGGGCTCGCGGCGGAAGGGTGGGAGGCGGAGGCTGGAGCCCCGAGCACCGAGCTCC
GGGTGGTCAGCCCTTGAAACCCATCCCCTCCACGGACCACGCCGCCAGCCGCAAAATATT
TTGTCCATCACAATTGCCCATGGACTCTGCCGTTGATGGCCCGAGACAACCTCCGGCTAG
GGCGGGGAGCCGCCTCTGCACACGCTGCGGCGAGCGGAAGGCCGCCCTCAAGCGTCCCAA
AACCTTAGAGCAGATATGTAGGGAATGCTTCTATGTTGTCTTTGAGGATGAGATCCATCA
GACTATTGTTGACAATAATTTGTTTAAACCTGGTGATCGTGTGGCCATTGGAGCTTCTGG
TGGAAAAGATTCAACCGTGCTCGCATATGTGCTATCAGAGTTAAATCGTCGTCACAAATA
TTGCCTTGATTTGTTTCTCTTATCTGTGGATGAAGGAATTACTGGTTATAGAGACGACTC
ACTAGAAACTGTTAAAAGGAATGAAATACAGTATGGCCTGCCATTGAAAATAGTTTCCTA
TAAGGACCTCTATGGCTGGACAATGGATGATATTGTGAAAGCAATTGGCCTAAAAAATAA
CTGTACCTTTTGTGGTGTTTTTCGACGTCAGGCACTGGACCGAGGTGCTGCTCTCTTAAA
AGTTGACAAGATTGTGACTGGACATAATGCTGATGACATTGCAGAAACTGTGTTATTGAA
TATATTACGTGGTGATATTGCACGGTTAAGTAGATGTACCTTTATAACTACTGGTGAAGA
TGGGCCAATCCCAAGATGCAAGCCTTTCAAATACACCTACGAGAAGGAGATTGTTATGTA
TGCATATTTCAAAAAGCTGGACTACTTCTCCACAGAATGCATATATTCACCAAATGCATA
CCGTGGATTTGCTCGCGAATTTATTAAAGATCTGGAAAGGATGAGACCTAGAGCTATACT
GGACATCATAAAATCAGGTGAGAATTTTAGGATCTCCACAACAACAAGGATGCCAGAGCA
AGGAACATGTGAACGTTGCGGCTACATTTCTAGTCAGAAATTATGCAAAGCATGTGTCTT
GCTGGACGGATTGAATCGAGGCTTACCAAAACTAGGCATAGGCAGGACCAAAGGCATTGC
TGGAGGTGATGGTGACTGTGAGCAGCAAGCCACACGTTCGGAGAGGAACAGATCGAGTCT
GCAAGGAAAACACGGGAACTTCGACTTCTAGATATTTCAACTGTAATTTTGTTACCATGT
CATTGTTGGTTTACGACACCTGGATCATTTGGCATGATTCAGTTGTACAAGCTAACTATT
TATGATTGTGAGATGGGTTGCTAAACTATCAGCAAGCTGATTTTACAGCATCTGTAGTTC
TGTACATGATGCGCGAAGGCCAGAAGCACCGCTCGACACAATGGTCGGCGGCGTGTTGTT
ACATTATCCGTTTATAAGTACTGTTTGAAACC