Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0759500-03
CDS Infomation

cds chromosome:IRGSP-1.0:2:31975706:31977493:1 gene:Os02g0759500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os02t0759500-01);Pentatricopeptide repeat domain containing protein. (Os02t0759500-02);Pentatricopeptide repeat domain containing protein. (Os02t0759500-03)
Sequence

ATGAACTGCCGCCACCTCGCCCTCCGGCTCCGCCACCTCCGCCGCCTTCTCGCGGTCGCA
CCCCTTTCCTCGCTCGCGGCCGCGCACTCCGCTAACCGCTCCTCCCCACGGCTAAACCCC
ACTTCGGTGCCGCCACCGCCGCGGCAGCTGCATCTCCCGACCCTCCAGGCTCGACGGCTC
TGCTCCACCACGCACGTCGTCCTCCCCACAAACCTCCAGGACGAGCGGTTCGCGGCTCTC
TCGGATAGGATCTACGACGCCGTGATTGAGACCGCGGCGGGTTCCAGCGAGGGCACGGAG
GCGGCCCTTGACGCGCTGGGCGCCGAGCTGACCACCCCGCTCGTCGCCGACGTGCTGCAT
CGCCTCCGTTACGACGAGAAGCTGGCCTTCCGGTTCTTCGTCTGGGCGTCTCACCAGGAC
GGCTACGAGCACGAGGCCGCGACGTACAACGACGTCATCGACATCCTCTCCGGCACGCGG
TACAAGGCCCGCCAGTTCGGCGTCCTCTGCGACGTGCTCGACCACATGAAGCGCCGCCGC
ACAAGGTCCGTGCCGGTCGACGACTTGCTGGGTATCCTGCGCGCATACACGGAGAAGCAC
CTCACGCATCTCAGGAAGCTGGCTAAGAAGCGGCGGGTGCGGATGCGCACGCCGCCGGAG
ACCGACGCTCTGAACGTGCTGCTGGACGCCTTCTGCAAGTGCGGGATGGTCCGGGAGGCG
GAGGTGGTGTTCAGCCGCGTGAAGAGGAAGCTGCTGGGGAATGCCGAGACATACAGTATC
CTGTTCTTCGGGTGGTGCCGGGCAAGGGACCCCAAGAGGGCCATGAAGGTGCTCGAGGAA
ATGATTCAGATGAAGCACACCCCTGAGAACTTCACTTACAATGCTGCCATTGACTCATTT
TGCAGTGCTGGTTTGGTCTCAGAGGCAAGGGATTTGTTTGAGTTCATGAGAACAGAGGGG
TCTACAATTTCATCGCCCACGGCTAAGACATACTCGATTATGATTGCGGCGCTAGCAAAG
GCTGGTCAGATGGAGGAGTGCTTTGAACTGATTTCAGAAATGAGAAAGTGCGGCTGTATG
CCTGATGTGTCGACATATAAAGACTTGATTGAAGGCATGTTGTTGGTGGATAAACTGGAT
GCTGCTTATTGTGTTTTAGATGAGATGGCAAAGGCTGGCTTTCCCCCTGACATTGTCACT
TACAATTGCTTTCTGAAGGTGCTTTGTGGTCTTCAAAAGGCTGATGACGCGCTTGAACTC
TGTGAAAGGATGATAGAGGCGCATTGTGAGCCTAGTGTTCATACATATAATATGCTGATG
GTGATGTTCTTTGAGATGAGAGAGCCAGATAGGGCAATCAATATTTGGATCGAGATGGAC
AAGAGAGGATGCCATCGCGCTGTTGATACCTACGAAACAATGATTGATGGGCTGTTTGAT
TCTGGAAGAACGGAAGATGCGACCGCTCTTCTAGATGAGGTAATAAACCGTGGCATGAAA
CTTTCGTACAAGAAGTTTGATGCTATCATGTTGCGGCTATCAGCTGTAGGCAACCTTGGC
GCGATACATCGGTTGTCAGAGCATATGAGGAGATTTTACAATGTTGCAATGTCTAGGCGT
TTTGCAATCACACAGAAGAAGAAGAGCATAGGTCTGAGAAGGAAATGA

Peptide Sequence

PEP ID

Os02t0759500-03
PEP Infomation

pep chromosome:IRGSP-1.0:2:31975706:31977493:1 gene:Os02g0759500 transcript:Os02t0759500-03 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os02t0759500-01);Pentatricopeptide repeat domain containing protein. (Os02t0759500-02);Pentatricopeptide repeat domain containing protein. (Os02t0759500-03)
Sequence

MNCRHLALRLRHLRRLLAVAPLSSLAAAHSANRSSPRLNPTSVPPPPRQLHLPTLQARRL
CSTTHVVLPTNLQDERFAALSDRIYDAVIETAAGSSEGTEAALDALGAELTTPLVADVLH
RLRYDEKLAFRFFVWASHQDGYEHEAATYNDVIDILSGTRYKARQFGVLCDVLDHMKRRR
TRSVPVDDLLGILRAYTEKHLTHLRKLAKKRRVRMRTPPETDALNVLLDAFCKCGMVREA
EVVFSRVKRKLLGNAETYSILFFGWCRARDPKRAMKVLEEMIQMKHTPENFTYNAAIDSF
CSAGLVSEARDLFEFMRTEGSTISSPTAKTYSIMIAALAKAGQMEECFELISEMRKCGCM
PDVSTYKDLIEGMLLVDKLDAAYCVLDEMAKAGFPPDIVTYNCFLKVLCGLQKADDALEL
CERMIEAHCEPSVHTYNMLMVMFFEMREPDRAINIWIEMDKRGCHRAVDTYETMIDGLFD
SGRTEDATALLDEVINRGMKLSYKKFDAIMLRLSAVGNLGAIHRLSEHMRRFYNVAMSRR
FAITQKKKSIGLRRK

Transcript Sequence

Transcript ID

Os02t0759500-03
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:31975706:31977493:1 gene:Os02g0759500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os02t0759500-01);Pentatricopeptide repeat domain containing protein. (Os02t0759500-02);Pentatricopeptide repeat domain containing protein. (Os02t0759500-03)
Sequence

CGCCGGCCGCGGCGCGCCGCCGTTCTGACGCTCCACGGCCACATGAACTGCCGCCACCTC
GCCCTCCGGCTCCGCCACCTCCGCCGCCTTCTCGCGGTCGCACCCCTTTCCTCGCTCGCG
GCCGCGCACTCCGCTAACCGCTCCTCCCCACGGCTAAACCCCACTTCGGTGCCGCCACCG
CCGCGGCAGCTGCATCTCCCGACCCTCCAGGCTCGACGGCTCTGCTCCACCACGCACGTC
GTCCTCCCCACAAACCTCCAGGACGAGCGGTTCGCGGCTCTCTCGGATAGGATCTACGAC
GCCGTGATTGAGACCGCGGCGGGTTCCAGCGAGGGCACGGAGGCGGCCCTTGACGCGCTG
GGCGCCGAGCTGACCACCCCGCTCGTCGCCGACGTGCTGCATCGCCTCCGTTACGACGAG
AAGCTGGCCTTCCGGTTCTTCGTCTGGGCGTCTCACCAGGACGGCTACGAGCACGAGGCC
GCGACGTACAACGACGTCATCGACATCCTCTCCGGCACGCGGTACAAGGCCCGCCAGTTC
GGCGTCCTCTGCGACGTGCTCGACCACATGAAGCGCCGCCGCACAAGGTCCGTGCCGGTC
GACGACTTGCTGGGTATCCTGCGCGCATACACGGAGAAGCACCTCACGCATCTCAGGAAG
CTGGCTAAGAAGCGGCGGGTGCGGATGCGCACGCCGCCGGAGACCGACGCTCTGAACGTG
CTGCTGGACGCCTTCTGCAAGTGCGGGATGGTCCGGGAGGCGGAGGTGGTGTTCAGCCGC
GTGAAGAGGAAGCTGCTGGGGAATGCCGAGACATACAGTATCCTGTTCTTCGGGTGGTGC
CGGGCAAGGGACCCCAAGAGGGCCATGAAGGTGCTCGAGGAAATGATTCAGATGAAGCAC
ACCCCTGAGAACTTCACTTACAATGCTGCCATTGACTCATTTTGCAGTGCTGGTTTGGTC
TCAGAGGCAAGGGATTTGTTTGAGTTCATGAGAACAGAGGGGTCTACAATTTCATCGCCC
ACGGCTAAGACATACTCGATTATGATTGCGGCGCTAGCAAAGGCTGGTCAGATGGAGGAG
TGCTTTGAACTGATTTCAGAAATGAGAAAGTGCGGCTGTATGCCTGATGTGTCGACATAT
AAAGACTTGATTGAAGGCATGTTGTTGGTGGATAAACTGGATGCTGCTTATTGTGTTTTA
GATGAGATGGCAAAGGCTGGCTTTCCCCCTGACATTGTCACTTACAATTGCTTTCTGAAG
GTGCTTTGTGGTCTTCAAAAGGCTGATGACGCGCTTGAACTCTGTGAAAGGATGATAGAG
GCGCATTGTGAGCCTAGTGTTCATACATATAATATGCTGATGGTGATGTTCTTTGAGATG
AGAGAGCCAGATAGGGCAATCAATATTTGGATCGAGATGGACAAGAGAGGATGCCATCGC
GCTGTTGATACCTACGAAACAATGATTGATGGGCTGTTTGATTCTGGAAGAACGGAAGAT
GCGACCGCTCTTCTAGATGAGGTAATAAACCGTGGCATGAAACTTTCGTACAAGAAGTTT
GATGCTATCATGTTGCGGCTATCAGCTGTAGGCAACCTTGGCGCGATACATCGGTTGTCA
GAGCATATGAGGAGATTTTACAATGTTGCAATGTCTAGGCGTTTTGCAATCACACAGAAG
AAGAAGAGCATAGGTCTGAGAAGGAAATGAATATTTCGAGATTTCTTGTTAGTGCAGATG
ATCAGGAGTTTATATGAGGTTAGCTAATTATTGGTTTATTATTGCAGC