Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0750400-01
CDS Infomation

cds chromosome:IRGSP-1.0:2:31530873:31531853:1 gene:Os02g0750400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os02t0750400-01)
Sequence

AAGATGGAGCAGGTGTTCAAGAGCTTACTACGATCAAAGGAGAAGCCTACACACCCAACT
TTCAATTCCATGATAACCAACTACGGGAAAGCGAGACTCAGGGAGAAAGCAGAGTGTGTG
CTTGATAAGATGACTGAAATGGGATTCAAACCGAACTATGTGACACAAGAATGTCTAATC
ATGATGTATGCATATTGTGATTGTGTCTCAAGGGCCAGACAGATATTCGATGAGCTTGTG
AGCTCACAAAATAATGTACACCTGTCATCAGTGAACGCAATGCTTGATGCGTACTGCATG
AACGGCTTGCCCATGGAAGCAGATCAGCTGTTAGATTCTGTAATTAAGAAAGGTGCTGTG
CCCAGTGCTTCCACATACAAATTGCTTTACAAGGCCTACACCAAAGCAAACGACAAGAAG
CTTATTCAGAAGTTGCTCAAACGGATGAACTCACAGGGTATTGTTCCAAATAAAAAGTTC
TTCTTGGATGCTTTGGAGGCATTTGGCAACACTGACAAGAAACCCCGGACGGTACCCAGC
AAAAACTCTGCAAGCAAGCCAGATGTGGAGTCCGCAAACAATTCTGGAACTGACACTTCA
AGCAAGCCAAATTTAAGCGTTTGGCAAGTTGCTGCGTGA

Peptide Sequence

PEP ID

Os02t0750400-01
PEP Infomation

pep chromosome:IRGSP-1.0:2:31530873:31531853:1 gene:Os02g0750400 transcript:Os02t0750400-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os02t0750400-01)
Sequence

KMEQVFKSLLRSKEKPTHPTFNSMITNYGKARLREKAECVLDKMTEMGFKPNYVTQECLI
MMYAYCDCVSRARQIFDELVSSQNNVHLSSVNAMLDAYCMNGLPMEADQLLDSVIKKGAV
PSASTYKLLYKAYTKANDKKLIQKLLKRMNSQGIVPNKKFFLDALEAFGNTDKKPRTVPS
KNSASKPDVESANNSGTDTSSKPNLSVWQVAA

Transcript Sequence

Transcript ID

Os02t0750400-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:31530873:31531853:1 gene:Os02g0750400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os02t0750400-01)
Sequence

ATAAGATGGAGCAGGTGTTCAAGAGCTTACTACGATCAAAGGAGAAGCCTACACACCCAA
CTTTCAATTCCATGATAACCAACTACGGGAAAGCGAGACTCAGGGAGAAAGCAGAGTGTG
TGCTTGATAAGATGACTGAAATGGGATTCAAACCGAACTATGTGACACAAGAATGTCTAA
TCATGATGTATGCATATTGTGATTGTGTCTCAAGGGCCAGACAGATATTCGATGAGCTTG
TGAGCTCACAAAATAATGTACACCTGTCATCAGTGAACGCAATGCTTGATGCGTACTGCA
TGAACGGCTTGCCCATGGAAGCAGATCAGCTGTTAGATTCTGTAATTAAGAAAGGTGCTG
TGCCCAGTGCTTCCACATACAAATTGCTTTACAAGGCCTACACCAAAGCAAACGACAAGA
AGCTTATTCAGAAGTTGCTCAAACGGATGAACTCACAGGGTATTGTTCCAAATAAAAAGT
TCTTCTTGGATGCTTTGGAGGCATTTGGCAACACTGACAAGAAACCCCGGACGGTACCCA
GCAAAAACTCTGCAAGCAAGCCAGATGTGGAGTCCGCAAACAATTCTGGAACTGACACTT
CAAGCAAGCCAAATTTAAGCGTTTGGCAAGTTGCTGCGTGATGGGGCGGTCAGTTAGTTC
TTACAAGCTCATACTCTGCGTTGCCTGACAGCACGGAGAATGCAATTAATTTATCTCTAA
AACTGTCTATAGCAGTATCTTTGGAGATACGAGCGATTGATTGGCTCATAACGCAGTTTT
CTTTATGTGAATGCTGAGATCTTTTGTGCGTCGGCTAATGCTGCTTGTAGTCTTGTAGAT
TTCATAGTTGTGTTGTAAAATCAGCATAGGGGTTTCTTTTTTTTCCTTCTTTTTTGTTCA
GCTCCTCTTTCGTATAGCTGCAAGCCTGCAATTCTGTCTGTCAGTAACCTTGAGGTTTCT
GAAGTATCGCTTCTCATTGTT