Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0747400-01
CDS Infomation

cds chromosome:IRGSP-1.0:2:31396772:31399000:1 gene:Os02g0747400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:TEOSINTE BRANCHED/CYCLOIDEA/PROLIFERATING CELL FACTOR 9 description:Similar to PCF1. (Os02t0747400-01)
Sequence

ATGACCATGGACGTCGCCGGAGACGCCGGAGGTGGCCGCCGCCCAAACTTCCCCTTGCAG
CTTCTTGAGAAGAAGGAGGAGCAGCCGTGCTCCAGCTCGGCTGCAGGAGGTGGTACTGGG
CCATCATCGGCGGGTGGCAACGGGAACAATGGATCGGGACCGGGCGGTGCCGGAGGGGAG
ATGCAGCTGCGGAAGGCGGCGCCGAAGCGGAGCTCCACCAAGGACCGGCACACCAAGGTG
GAAGGGAGGGGGCGGCGCATCCGGATGCCGGCGCTGTGCGCGGCGAGGGTGTTCCAGCTG
ACGCGGGAGCTGGGGCACAAGACGGACGGCGAGACCATCGAGTGGCTGCTGCAGCAGGCG
GAGCCGGCGGTGATCGCGGCCACCGGCACCGGCACCATCCCGGCCAACTTCACCTCGCTC
AATATCTCCCTCCGCTCCTCCGGATCGTCGCTGTCCGCCCCGGCGCACCTCCGCGCGTTA
CCTAGCCCCGCCGCCGCCGCCCGGTTCGGATCCCGTGCGGACGCGTGGGACCGGGTTGTC
AGCCTCGGGTTCCCGTCCGAGGGCCCCGCCTCGTCGTCCTCGTCGCCGTCCCCGCTTCTG
TTGAACTTCCACTCGGGCAGCGTCGGTCTCGATGTGCAACCTTCGCCTTCCGCCGCTGCC
GCCGCCGCCGACCTCTCCAGGAAGCGGCGCTGGGAGCAGGAAATGCAGCAGCAGCAACAG
CAACAACAGCAGCAGCAGCAGCAGCAGCAGCAACAGTACCAGCAGCAGATGGCCGGGTAC
ACGCAGAGCCAAATGCCGGGCACCGTGTGGATGGTGCCGAGCAACAGCACGCAAGGAGGT
GGGCCGTCCGGTGGTGGCGGTGGCGGCGGAGGAGGCAGCGGGGAGTCCATTTGGACGTTC
CCGCAGATGAGCAGCGCCGCCGCGGCCGCCGCCGTGTACCGGGGGAGCGTTCCGAGCGGG
CTACATTTCATGAACTTCCCTGCACCGATGGCGCTCCTACCGGGACAGCAGCTGGGGCTC
GGCCCAGTTGGAGGCGGCGGTGGCGGTGGAGGAGGCGGGGAGGGGCACATGGGGATCCTT
GCCGCCCTCAATGCTTACCGGACACAGGCGGCGACGGATGCCGCCGGTCAGCAAGGCGGA
GGAGGAGGTGGAGGAGGATCTAGCCAGCAGCAACACGGAGGCGGCGGCGGCGGCGGCGAG
CGGCATCAGAGCATAAGCACCAGCGACTCGTAG

Peptide Sequence

PEP ID

Os02t0747400-01
PEP Infomation

pep chromosome:IRGSP-1.0:2:31396772:31399000:1 gene:Os02g0747400 transcript:Os02t0747400-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:TEOSINTE BRANCHED/CYCLOIDEA/PROLIFERATING CELL FACTOR 9 description:Similar to PCF1. (Os02t0747400-01)
Sequence

MTMDVAGDAGGGRRPNFPLQLLEKKEEQPCSSSAAGGGTGPSSAGGNGNNGSGPGGAGGE
MQLRKAAPKRSSTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQA
EPAVIAATGTGTIPANFTSLNISLRSSGSSLSAPAHLRALPSPAAAARFGSRADAWDRVV
SLGFPSEGPASSSSSPSPLLLNFHSGSVGLDVQPSPSAAAAAADLSRKRRWEQEMQQQQQ
QQQQQQQQQQQQYQQQMAGYTQSQMPGTVWMVPSNSTQGGGPSGGGGGGGGGSGESIWTF
PQMSSAAAAAAVYRGSVPSGLHFMNFPAPMALLPGQQLGLGPVGGGGGGGGGGEGHMGIL
AALNAYRTQAATDAAGQQGGGGGGGGSSQQQHGGGGGGGERHQSISTSDS

Transcript Sequence

Transcript ID

Os02t0747400-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:31396772:31399000:1 gene:Os02g0747400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:TEOSINTE BRANCHED/CYCLOIDEA/PROLIFERATING CELL FACTOR 9 description:Similar to PCF1. (Os02t0747400-01)
Sequence

ATTCACCCATCTCTCTCTCCTCCTCCTCCATGCCCTACAAACTACAAAGTACACTTCCTC
TTCCTCCTCCACCCTCTCCCTCTCCCACTCCAGTGGCTGGCCTGGCTACCTAGCCACCTA
GGGTCATCTGCTCCTACTCTCTAGCTCTCTCTTTCTCTCTCTAAGATCACCCGGCCGGCC
ACCAGCTGGGGATGAACCTGACCAAAACACCATAAAATAGTGTGTGATCTCCCCACACGC
ACACAGAAGCTAGCAGCAACAAGCTTCATTCGCCTCACCCTCTCCCATCATATCATATGA
GGAAGCAGGATTCTTTCCAACCTACAATATATCTTTTCCCTGATGGCTAGCTAGCTCTTT
CTCGGACTTTCTTTCTTTCTCTCTCTCTATCCGTCTCTACCACATCGCACCACCTAACCT
TCTCGAGCTAGACCCACCCACAACGAGAGGGAGGCAGGCAGGCCGCCCGGAGACATCAAA
TTCATTCTCCTCTTCTCTTCCAAACAACCACCTCACTTACCAGCCTAAAAAATCCAATCA
AAGAGAGGTATAGTTGGTTTATATCTGTGTATATATACCATGGCCTAATTGATGACCATG
GACGTCGCCGGAGACGCCGGAGGTGGCCGCCGCCCAAACTTCCCCTTGCAGCTTCTTGAG
AAGAAGGAGGAGCAGCCGTGCTCCAGCTCGGCTGCAGGAGGTGGTACTGGGCCATCATCG
GCGGGTGGCAACGGGAACAATGGATCGGGACCGGGCGGTGCCGGAGGGGAGATGCAGCTG
CGGAAGGCGGCGCCGAAGCGGAGCTCCACCAAGGACCGGCACACCAAGGTGGAAGGGAGG
GGGCGGCGCATCCGGATGCCGGCGCTGTGCGCGGCGAGGGTGTTCCAGCTGACGCGGGAG
CTGGGGCACAAGACGGACGGCGAGACCATCGAGTGGCTGCTGCAGCAGGCGGAGCCGGCG
GTGATCGCGGCCACCGGCACCGGCACCATCCCGGCCAACTTCACCTCGCTCAATATCTCC
CTCCGCTCCTCCGGATCGTCGCTGTCCGCCCCGGCGCACCTCCGCGCGTTACCTAGCCCC
GCCGCCGCCGCCCGGTTCGGATCCCGTGCGGACGCGTGGGACCGGGTTGTCAGCCTCGGG
TTCCCGTCCGAGGGCCCCGCCTCGTCGTCCTCGTCGCCGTCCCCGCTTCTGTTGAACTTC
CACTCGGGCAGCGTCGGTCTCGATGTGCAACCTTCGCCTTCCGCCGCTGCCGCCGCCGCC
GACCTCTCCAGGAAGCGGCGCTGGGAGCAGGAAATGCAGCAGCAGCAACAGCAACAACAG
CAGCAGCAGCAGCAGCAGCAGCAACAGTACCAGCAGCAGATGGCCGGGTACACGCAGAGC
CAAATGCCGGGCACCGTGTGGATGGTGCCGAGCAACAGCACGCAAGGAGGTGGGCCGTCC
GGTGGTGGCGGTGGCGGCGGAGGAGGCAGCGGGGAGTCCATTTGGACGTTCCCGCAGATG
AGCAGCGCCGCCGCGGCCGCCGCCGTGTACCGGGGGAGCGTTCCGAGCGGGCTACATTTC
ATGAACTTCCCTGCACCGATGGCGCTCCTACCGGGACAGCAGCTGGGGCTCGGCCCAGTT
GGAGGCGGCGGTGGCGGTGGAGGAGGCGGGGAGGGGCACATGGGGATCCTTGCCGCCCTC
AATGCTTACCGGACACAGGCGGCGACGGATGCCGCCGGTCAGCAAGGCGGAGGAGGAGGT
GGAGGAGGATCTAGCCAGCAGCAACACGGAGGCGGCGGCGGCGGCGGCGAGCGGCATCAG
AGCATAAGCACCAGCGACTCGTAGGGCTCTGAAGATCGCGTCGCGTCGCATGCATTGGCC
CGGTCGGTGTGACTTTGATCTGTTCTTTGTCTTGGTTTCATTCTTTCTTCTTTTGTTGGT
TTCCTTCCACTCTCTCCCTAGGCAAGAGCTTGCAAGGACTCACACACTTAGCTGCATTCC
ATGGCATTCTTACGTACGTATGCTAGGCTAGCTAGCTACCTGAACTTGTGCTTATGGGTG
AGAGCGAGGTGATGATGCCTGGGAGGATCAAGAGGAGGGAAACGCACGCAGCTGCATGCG
GAGAGATTGTTCTTTTTGTTCATTTAGCTCTAGAGTTTGATCGAGTGCGAGCAGAAGAGA
AATTTTTTTTTATCAAGCATGGCAATCCATTATCTGCATGCCATGACGATGGTTCATTTT
TTTTTCTCC