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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0744200-01
CDS Infomation

cds chromosome:IRGSP-1.0:2:31220568:31222172:1 gene:Os02g0744200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ALPHA-EXPANSIN 5 description:Alpha-expansin OsEXPA5. (Os02t0744200-01)
Sequence

ATGTCGTCCCGCCGAGACGTCCTCGCTGTTGTCCTCGTGGCCGCGCTGCTCCCGCCGGCG
TTGTCCCGTGGGCTTTGGCTGGGGCACCACGGGCTGGGGCACGGGCACGGGCGATGGCGC
GCGCCGCATGTCGGCGGACACGGCCAGGGACAGGGGCCGCAGCAGCACGCGCCGCTCGGC
GGCGGCGGGTGGTCGTCGGCGCACGCCACGTTCTACGGCGGGGGTGACGCGTCGGGCACC
ATGGGAGGGGCGTGCGGGTACGGGAACCTCTACAGCCAGGGGTACGGGACGAACACGGCG
GCGCTGAGCACGGCGCTGTTCAACAACGGCCTCAGCTGCGGCGCGTGCTTCGAGGTGCGC
TGCGACGCCGGCGGCGGCGGGAGCCACTCGTGCCTGCCCGGCTCGGTCGTCGTCACGGCC
ACCAACTTCTGCCCGCCGAACAACGCGCTCCCGTCCGACGACGGCGGCTGGTGCAACCCT
CCGCGCGCGCACTTCGACATGTCCCAGCCCGTCTTCCAGCGCATCGCTCTCTTCAAGGCC
GGCATTGTCCCCGTCTCCTACCGCCGGGTGGCTTGCCAGAAGAAGGGCGGGATCCGGTTC
ACCATCAACGGGCACTCCTACTTCAACCTGGTGCTGGTGACCAACGTGGGCGGCGCCGGC
GACGTGCACGCGGTGGCCGTGAAGTCGGAGCGCTCGGCGGCGTGGCAGGCCCTGTCGCGC
AACTGGGGCCAGAACTGGCAGAGCGCCGCGCTCCTCGACGGTCAGGCGCTCTCCTTCCGC
GTCACCACCGGCGACGGCCGCTCCGTCGTCTCCAACAACGCCGTCCCCCGTGGCTGGTCC
TTCGGCCAGACCTTCAGCGGGGCCCAGTTCAACTGA

Peptide Sequence

PEP ID

Os02t0744200-01
PEP Infomation

pep chromosome:IRGSP-1.0:2:31220568:31222172:1 gene:Os02g0744200 transcript:Os02t0744200-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ALPHA-EXPANSIN 5 description:Alpha-expansin OsEXPA5. (Os02t0744200-01)
Sequence

MSSRRDVLAVVLVAALLPPALSRGLWLGHHGLGHGHGRWRAPHVGGHGQGQGPQQHAPLG
GGGWSSAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEVR
CDAGGGGSHSCLPGSVVVTATNFCPPNNALPSDDGGWCNPPRAHFDMSQPVFQRIALFKA
GIVPVSYRRVACQKKGGIRFTINGHSYFNLVLVTNVGGAGDVHAVAVKSERSAAWQALSR
NWGQNWQSAALLDGQALSFRVTTGDGRSVVSNNAVPRGWSFGQTFSGAQFN

Transcript Sequence

Transcript ID

Os02t0744200-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:31220568:31222172:1 gene:Os02g0744200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ALPHA-EXPANSIN 5 description:Alpha-expansin OsEXPA5. (Os02t0744200-01)
Sequence

ACTCCACACTCCACGCCTCCGCCCGCTCTCGTCGCAGCGCACCCCGTCGCGTGCGACGAC
TCCATCCCCGTCACAACAATGTCGTCCCGCCGAGACGTCCTCGCTGTTGTCCTCGTGGCC
GCGCTGCTCCCGCCGGCGTTGTCCCGTGGGCTTTGGCTGGGGCACCACGGGCTGGGGCAC
GGGCACGGGCGATGGCGCGCGCCGCATGTCGGCGGACACGGCCAGGGACAGGGGCCGCAG
CAGCACGCGCCGCTCGGCGGCGGCGGGTGGTCGTCGGCGCACGCCACGTTCTACGGCGGG
GGTGACGCGTCGGGCACCATGGGAGGGGCGTGCGGGTACGGGAACCTCTACAGCCAGGGG
TACGGGACGAACACGGCGGCGCTGAGCACGGCGCTGTTCAACAACGGCCTCAGCTGCGGC
GCGTGCTTCGAGGTGCGCTGCGACGCCGGCGGCGGCGGGAGCCACTCGTGCCTGCCCGGC
TCGGTCGTCGTCACGGCCACCAACTTCTGCCCGCCGAACAACGCGCTCCCGTCCGACGAC
GGCGGCTGGTGCAACCCTCCGCGCGCGCACTTCGACATGTCCCAGCCCGTCTTCCAGCGC
ATCGCTCTCTTCAAGGCCGGCATTGTCCCCGTCTCCTACCGCCGGGTGGCTTGCCAGAAG
AAGGGCGGGATCCGGTTCACCATCAACGGGCACTCCTACTTCAACCTGGTGCTGGTGACC
AACGTGGGCGGCGCCGGCGACGTGCACGCGGTGGCCGTGAAGTCGGAGCGCTCGGCGGCG
TGGCAGGCCCTGTCGCGCAACTGGGGCCAGAACTGGCAGAGCGCCGCGCTCCTCGACGGT
CAGGCGCTCTCCTTCCGCGTCACCACCGGCGACGGCCGCTCCGTCGTCTCCAACAACGCC
GTCCCCCGTGGCTGGTCCTTCGGCCAGACCTTCAGCGGGGCCCAGTTCAACTGATTCCGC
TCAATTTTACTCGAGCATCGTCGTGGTAGTTGCAGTAGTACTCCCAACTGGACCGTGCTG
GGAAGTGCCATTGTTTTATGATTGGTACTCAGTCTCGCCTTGGTTCTTGGGAAAGTATTT
AGTGGGTAGTTTGGCCTAGTATCAACATGGGCTTTGTGCTGGTGTCACTGCTAGTGGTAG
TTTGTTACAAGTACCATTAGTTGAGCTTTTGTGGTATCTTTTGGCTAGGGATTGGAAGTG
GTGGTAAGGCTGTGGCTTGATTGACAGAGGCCGCCTTGTATCACCCGCCAAAATAGCAAA
ATTGGGCCTAATGGGAATGGCCTTCTGCTAGTAATGGTTTTGCCTGGTTGTTGTCTGTAC
CGGACCCCAGTACCGGACCTCATTTTGGGGGTGCCAAACAGTTTAGGCATCTGGGGTATG
CCCTGTGTGCTGCTTATGAACAATTTCTTTTTACT