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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0723400-02
CDS Infomation

cds chromosome:IRGSP-1.0:2:30064483:30066172:1 gene:Os02g0723400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:IAA8 description:Similar to Isoform 2 of Auxin-responsive protein IAA8. (Os02t0723400-01);AUX/IAA protein family protein. (Os02t0723400-02)
Sequence

ATGGAGTGCATGGCGAGTACTGAAGAGTCTCTCCCAGCTTCTTCCTCCATGGATAGTTGC
AGCGGCGAACTGCCGACGACGACGACGACGGCGCCGGCGCAATCCACGGCGTCTTCCGGC
TGCCGACCGCCGGCGACGGCGGCGAAGCGGCGGAGTCTGATCAGCACAGATCTTCGCCTC
GGGCTCACCCTCTCCTCCGTCGTCCACATCGACGGCAACAACCCTTCTACCCCAAGGAGT
TCCCTCACGACGGCGACAGTGACAGCTGATCGAGGCGGCGGCGGCGGCGGCCATGGACGG
CGACGGTCACTGTTCGTGAAGGTGTACATGGAGGGCGTCCCCATCGGCAGGAAGCTGGAC
CTGCTGCCGCTGGACGGCTACAAAGGTCTCGTCGCACGGCTCGCCTCCATGTTCAGAGCA
TCCATCACCTATCATCATTGCCATCGACAGTTCGCCGTCGTCGGGATGAAGACGAACAAG
GTTCATCATGTTCTGACATACGAAGACCAGGAGGGAGACTGGATGATGGCTGGAGACGTG
CCATGGGAGCTGTTCCTGACAAGCGTGAAGAGATTGAGGATTGCAAGAGCGGATGACAAG
TACTGCTATAGCTGTTGA

Peptide Sequence

PEP ID

Os02t0723400-02
PEP Infomation

pep chromosome:IRGSP-1.0:2:30064483:30066172:1 gene:Os02g0723400 transcript:Os02t0723400-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:IAA8 description:Similar to Isoform 2 of Auxin-responsive protein IAA8. (Os02t0723400-01);AUX/IAA protein family protein. (Os02t0723400-02)
Sequence

MECMASTEESLPASSSMDSCSGELPTTTTTAPAQSTASSGCRPPATAAKRRSLISTDLRL
GLTLSSVVHIDGNNPSTPRSSLTTATVTADRGGGGGGHGRRRSLFVKVYMEGVPIGRKLD
LLPLDGYKGLVARLASMFRASITYHHCHRQFAVVGMKTNKVHHVLTYEDQEGDWMMAGDV
PWELFLTSVKRLRIARADDKYCYSC

Transcript Sequence

Transcript ID

Os02t0723400-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:30064483:30066172:1 gene:Os02g0723400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:IAA8 description:Similar to Isoform 2 of Auxin-responsive protein IAA8. (Os02t0723400-01);AUX/IAA protein family protein. (Os02t0723400-02)
Sequence

TTTCTCTAGTGATCTTCTTTTTCTTTTCTTTTGTTTTCTGTCTCTAGCGAACTACTAGTT
CTTGGATCCGATCGACCGACCCTACCACCCTTGATTTCATGGAGTGCATGGCGAGTACTG
AAGAGTCTCTCCCAGCTTCTTCCTCCATGGATAGTTGCAGCGGCGAACTGCCGACGACGA
CGACGACGGCGCCGGCGCAATCCACGGCGTCTTCCGGCTGCCGACCGCCGGCGACGGCGG
CGAAGCGGCGGAGTCTGATCAGCACAGATCTTCGCCTCGGGCTCACCCTCTCCTCCGTCG
TCCACATCGACGGCAACAACCCTTCTACCCCAAGGAGTTCCCTCACGACGGCGACAGTGA
CAGCTGATCGAGGCGGCGGCGGCGGCGGCCATGGACGGCGACGGTCACTGTTCGTGAAGG
TGTACATGGAGGGCGTCCCCATCGGCAGGAAGCTGGACCTGCTGCCGCTGGACGGCTACA
AAGGTCTCGTCGCACGGCTCGCCTCCATGTTCAGAGCATCCATCACCTATCATCATTGCC
ATCGACAGTTCGCCGTCGTCGGGATGAAGACGAACAAGGTTCATCATGTTCTGACATACG
AAGACCAGGAGGGAGACTGGATGATGGCTGGAGACGTGCCATGGGAGCTGTTCCTGACAA
GCGTGAAGAGATTGAGGATTGCAAGAGCGGATGACAAGTACTGCTATAGCTGTTGAATAA
TTGGTTAACCAGGATGGTCAATTAATTCTTCCAGAGTTCTTGGATTTCATTCATTCTTAC
TTTGCTCATTTTGGTGGAGCAATTTAGATTTGAGATGATTGTTTTCGGGAGCGAAAATTT
ACTAGTAAAAGCATAGTGATATTGAGCAGAGGATATTGTACAAAATATATTGTACACACT
AGTAAAAGAAAAGAAACATATATATAGAAATACCATTTTACTTCTCAGTCTAGAATAATT
TATTCCGAACTGGCAATTTTACTGTATGAAAAATAATTTTCTC