Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os02t0720700-01
CDS Infomation	cds chromosome:IRGSP-1.0:2:29899297:29904080:-1 gene:Os02g0720700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CYSTATHIONINE B-SYNTHASE DOMAIN CONTAINING CHLORIDE CHANNEL PROTEIN 9 description:Similar to Chloride channel protein CLC-f (AtCLC-f). Splice isoform 2. (Os02t0720700-01)
Sequence	ATGTCGTCCCGCGGCGGCGAGGACGACGACCACGCCTCGCTCCTCAGATCCCACCCCGCG GCCGGCGCCGGCGCCGGGTCCGGCTCATCGTCGCCGTGCCCATCTCCGCGGGCTGTCGGT GGCCACCACCACAACCAGCACGCGGACGTCGAGGCGGTGGGGGAGGCCACCGTCACCGCC TCCCCGAGGCGGAGCGGCGGCGTGCGTGGCCTCCTGCGGCACCTCGACCGCCGCCTCTCC GCGCGCGGATCCGGGGGGCGTCGAAGCCAGCAGCCGCCGCAGCAGCTCGATCGCCCCGAG CCGTCCCCGACGTCGTCGCCGCAGCAGAGGGAGAGGGTCGGGGAGGAGCTCGGGGATGGG GCGCCGCCGGAGTGGGCGCTGCTGCTCATCGGCTGCCTCCTCGGGCTCGCCACCGGCATT TGCGTCGCCGCGTTTAACCGTGGGGTTCATGTCATCCATGAATGGGCTTGGGCAGGTACC CCAAATGAAGGTGCAGCTTGGCTCCGCCTTCAGAGGCTAGCTGATACTTGGCACAGAATA CTGCTGATCCCTGTGACAGGAGGCGTTGTTGTAGGAATGATGCATGGGTTGCTTGAGATA TTTGATCAGCTCAAACTCGTGAAACCGCCTCAGAAACAAGGAATCAATTTCCTTGCGGCA ATCTTTCCAACTGTAAATGCTGTCCAGGCTGCTGTAACTCTAGGTACTGGTTGCTCACTG GGGCCTGAAGGTCCTAGTGTGGATATTGGCAAATCATGTGCAAATGGGTGCTCGGAAATG ATGGAGAATAACAGGGAGAGGCGGATTGCTCTTGTAGCTGCTGGTGCTGCTGCTGGAATT GCTTCAGGCTTCAATGCAGCAGTTGCTGGGTGTTTCTTTGCCATTGAAACTGTACTGAGG CCACTGAAAGCAGAAAATTCACCTCCTTTTACAACTGCAATGATAATATTGGCTTCTGTT ATATCATCTACTGTGTCAAATGTTCTGCTTGGAGAAAGGCCAGCTTTTATAGTGCCAGCG TATGAGCTAAAATCTGCTGCCGAGCTACCTTTATATCTCATCTTAGGAATGCTTTGTGGA GCGGTCAGTGTGGTATTTGGCCGGTTGGTTGTATGGTTTTCGAATTTTTTTGGATACTTA AAAGAAAGATACGATTTTCCTATTGTAGTATACCCTGCTTTGGGTGGACTGGGAGCTGGC CTCATAGCTCTCAAATATCCTGGCATTCTATACTGGGGTTTCACAAATGTTGAAGAAATA CTACATACTGGGAAAAGTGCTTCTGCTCCTGGTATATGGTTGTTAACTCAGCTTGCAGCT GCAAAGGTAGTTGCAACTGCCCTTTGCAAGGGATCTGGCCTTGTGGGTGGGCTATATGCA CCAAGCCTAATGATTGGGGCTGCTGTTGGAGCTGTTTTTGGAGGGTCAGCTGGATATTTG ATAAATTCTGCTGTACCTGGTAATGCTGCTGTTGCACAGCCACAAGCTTATGCTCTAGTT GGAATGGCTGCTACACTAGCTTCAGTCTGTTCAGTCCCACTGACCTCAGTGCTGCTTCTC TTTGAACTGACAAAGGACTACAGGATTTTGCTTCCTCTCATGGGAGCAGTTGGGTTAGCA ATCTGGGTTCCTTCTGTAGTAAACCAATCAAAGGATGGTGAACCATCTAGGTTTAGAACA CCCAGGCGTGGTTATTCTTCACTTTCTTCAGAAGATAGAAATAGTAAAAGCTGGAGGCGA GGTGACAGTGTAAATGATCTTGAGCTCACTAGCTTACGGACTGATAACTATGACACCTAT AATGAGGAAATGCTTCTAGATGATTTGAAGGTCTCCCAGGCCATGTCAAAGAGCTATGTT AAAATTCCAACATCTGCCATGGTGACAGAAGCTCTCAAGCTTTTGCATGATAAGCAGCAA AATTGCGGCCTTGTTGTGGATTGTGAAGATTTTCTCGAAGGAATTGTTACATTAGGGGAT ATTCGCCGTATGGGATTTGAATTACATGGGGACAGTTTCACAAGTGGAGACCAGCTCAAG CCCGCTGAAAATTCTTCAACCATATCATTGTGTCTTACTCGAGGATTCCAGTACGAGGGG AATGAACGTGGATTGCTAACCTGCTTTCCTGATACTGATTTGACCACTGCAAAAAACCTT ATGGAGGCCAGAGGAATAAAGCAGCTGCCTGTCGTGAAGCGTGGTGTCGGCCATAGAACT GAAGGAAAACGCAAGCTTATTGCTCTTCTACATTATGATTCTATTGGTCACTGCTTACGG GAGGAAATTGAGAACTGGAAGGCCATATATCAAATAAAAGAGGACTTCCATCTCATAGCA AATGGGCATTGA

Peptide Sequence

PEP ID	Os02t0720700-01
PEP Infomation	pep chromosome:IRGSP-1.0:2:29899297:29904080:-1 gene:Os02g0720700 transcript:Os02t0720700-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CYSTATHIONINE B-SYNTHASE DOMAIN CONTAINING CHLORIDE CHANNEL PROTEIN 9 description:Similar to Chloride channel protein CLC-f (AtCLC-f). Splice isoform 2. (Os02t0720700-01)
Sequence	MSSRGGEDDDHASLLRSHPAAGAGAGSGSSSPCPSPRAVGGHHHNQHADVEAVGEATVTA SPRRSGGVRGLLRHLDRRLSARGSGGRRSQQPPQQLDRPEPSPTSSPQQRERVGEELGDG APPEWALLLIGCLLGLATGICVAAFNRGVHVIHEWAWAGTPNEGAAWLRLQRLADTWHRI LLIPVTGGVVVGMMHGLLEIFDQLKLVKPPQKQGINFLAAIFPTVNAVQAAVTLGTGCSL GPEGPSVDIGKSCANGCSEMMENNRERRIALVAAGAAAGIASGFNAAVAGCFFAIETVLR PLKAENSPPFTTAMIILASVISSTVSNVLLGERPAFIVPAYELKSAAELPLYLILGMLCG AVSVVFGRLVVWFSNFFGYLKERYDFPIVVYPALGGLGAGLIALKYPGILYWGFTNVEEI LHTGKSASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAGYL INSAVPGNAAVAQPQAYALVGMAATLASVCSVPLTSVLLLFELTKDYRILLPLMGAVGLA IWVPSVVNQSKDGEPSRFRTPRRGYSSLSSEDRNSKSWRRGDSVNDLELTSLRTDNYDTY NEEMLLDDLKVSQAMSKSYVKIPTSAMVTEALKLLHDKQQNCGLVVDCEDFLEGIVTLGD IRRMGFELHGDSFTSGDQLKPAENSSTISLCLTRGFQYEGNERGLLTCFPDTDLTTAKNL MEARGIKQLPVVKRGVGHRTEGKRKLIALLHYDSIGHCLREEIENWKAIYQIKEDFHLIA NGH

Transcript Sequence

Transcript ID	Os02t0720700-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:2:29899297:29904080:-1 gene:Os02g0720700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CYSTATHIONINE B-SYNTHASE DOMAIN CONTAINING CHLORIDE CHANNEL PROTEIN 9 description:Similar to Chloride channel protein CLC-f (AtCLC-f). Splice isoform 2. (Os02t0720700-01)
Sequence	GCCGCATTCCTCCGCGCCCCTCAGATCTCCGCTGACTCCGCCGCCGCCCGCCGACATGTC GTCCCGCGGCGGCGAGGACGACGACCACGCCTCGCTCCTCAGATCCCACCCCGCGGCCGG CGCCGGCGCCGGGTCCGGCTCATCGTCGCCGTGCCCATCTCCGCGGGCTGTCGGTGGCCA CCACCACAACCAGCACGCGGACGTCGAGGCGGTGGGGGAGGCCACCGTCACCGCCTCCCC GAGGCGGAGCGGCGGCGTGCGTGGCCTCCTGCGGCACCTCGACCGCCGCCTCTCCGCGCG CGGATCCGGGGGGCGTCGAAGCCAGCAGCCGCCGCAGCAGCTCGATCGCCCCGAGCCGTC CCCGACGTCGTCGCCGCAGCAGAGGGAGAGGGTCGGGGAGGAGCTCGGGGATGGGGCGCC GCCGGAGTGGGCGCTGCTGCTCATCGGCTGCCTCCTCGGGCTCGCCACCGGCATTTGCGT CGCCGCGTTTAACCGTGGGGTTCATGTCATCCATGAATGGGCTTGGGCAGGTACCCCAAA TGAAGGTGCAGCTTGGCTCCGCCTTCAGAGGCTAGCTGATACTTGGCACAGAATACTGCT GATCCCTGTGACAGGAGGCGTTGTTGTAGGAATGATGCATGGGTTGCTTGAGATATTTGA TCAGCTCAAACTCGTGAAACCGCCTCAGAAACAAGGAATCAATTTCCTTGCGGCAATCTT TCCAACTGTAAATGCTGTCCAGGCTGCTGTAACTCTAGGTACTGGTTGCTCACTGGGGCC TGAAGGTCCTAGTGTGGATATTGGCAAATCATGTGCAAATGGGTGCTCGGAAATGATGGA GAATAACAGGGAGAGGCGGATTGCTCTTGTAGCTGCTGGTGCTGCTGCTGGAATTGCTTC AGGCTTCAATGCAGCAGTTGCTGGGTGTTTCTTTGCCATTGAAACTGTACTGAGGCCACT GAAAGCAGAAAATTCACCTCCTTTTACAACTGCAATGATAATATTGGCTTCTGTTATATC ATCTACTGTGTCAAATGTTCTGCTTGGAGAAAGGCCAGCTTTTATAGTGCCAGCGTATGA GCTAAAATCTGCTGCCGAGCTACCTTTATATCTCATCTTAGGAATGCTTTGTGGAGCGGT CAGTGTGGTATTTGGCCGGTTGGTTGTATGGTTTTCGAATTTTTTTGGATACTTAAAAGA AAGATACGATTTTCCTATTGTAGTATACCCTGCTTTGGGTGGACTGGGAGCTGGCCTCAT AGCTCTCAAATATCCTGGCATTCTATACTGGGGTTTCACAAATGTTGAAGAAATACTACA TACTGGGAAAAGTGCTTCTGCTCCTGGTATATGGTTGTTAACTCAGCTTGCAGCTGCAAA GGTAGTTGCAACTGCCCTTTGCAAGGGATCTGGCCTTGTGGGTGGGCTATATGCACCAAG CCTAATGATTGGGGCTGCTGTTGGAGCTGTTTTTGGAGGGTCAGCTGGATATTTGATAAA TTCTGCTGTACCTGGTAATGCTGCTGTTGCACAGCCACAAGCTTATGCTCTAGTTGGAAT GGCTGCTACACTAGCTTCAGTCTGTTCAGTCCCACTGACCTCAGTGCTGCTTCTCTTTGA ACTGACAAAGGACTACAGGATTTTGCTTCCTCTCATGGGAGCAGTTGGGTTAGCAATCTG GGTTCCTTCTGTAGTAAACCAATCAAAGGATGGTGAACCATCTAGGTTTAGAACACCCAG GCGTGGTTATTCTTCACTTTCTTCAGAAGATAGAAATAGTAAAAGCTGGAGGCGAGGTGA CAGTGTAAATGATCTTGAGCTCACTAGCTTACGGACTGATAACTATGACACCTATAATGA GGAAATGCTTCTAGATGATTTGAAGGTCTCCCAGGCCATGTCAAAGAGCTATGTTAAAAT TCCAACATCTGCCATGGTGACAGAAGCTCTCAAGCTTTTGCATGATAAGCAGCAAAATTG CGGCCTTGTTGTGGATTGTGAAGATTTTCTCGAAGGAATTGTTACATTAGGGGATATTCG CCGTATGGGATTTGAATTACATGGGGACAGTTTCACAAGTGGAGACCAGCTCAAGCCCGC TGAAAATTCTTCAACCATATCATTGTGTCTTACTCGAGGATTCCAGTACGAGGGGAATGA ACGTGGATTGCTAACCTGCTTTCCTGATACTGATTTGACCACTGCAAAAAACCTTATGGA GGCCAGAGGAATAAAGCAGCTGCCTGTCGTGAAGCGTGGTGTCGGCCATAGAACTGAAGG AAAACGCAAGCTTATTGCTCTTCTACATTATGATTCTATTGGTCACTGCTTACGGGAGGA AATTGAGAACTGGAAGGCCATATATCAAATAAAAGAGGACTTCCATCTCATAGCAAATGG GCATTGAACAGCATTACATTGACCAATATTACACCACATCAATCGCATGCAATTTGATAT CCTTAAGGCATTTTTGCCAAATGGGGATACAGGAGGTATACACGAAGTTCAACTTGTACA GATTTGAGGCTCCTCTACAAAGAATTAAATTGCCATCTGAGGAAATTATTCAGGCTAGCT AGCCAATTTTGCAATAGAGGTTATGGTCCATTCTTGTTGCGAAGCAACTTCTACTTCACA CGGGAGGAGATGGGTATGTATGAATTCAGTTATTCAGAATTGGAAAGTGGCATTGTAATG TATATCTTGTACCTGTACTATTTGTAACTGTGTAACATCCTGTTGCTGGGAAGCATCATA TGCGCCAGCTTGTAGAGGTGCAGTCACACGAGAAACTAGTGTAATAAAGTGTGCAGCAGA AAATTTTGTCAAGAAGCCGATGTTGTAGGTTGTAGCGTCACATTGTATGTAACACTTTAT ATCAGCACTTGAACTGAATTTCTCCC