Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0708400-01
CDS Infomation

cds chromosome:IRGSP-1.0:2:29287709:29291570:-1 gene:Os02g0708400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tetratricopeptide-like helical domain containing protein. (Os02t0708400-01)
Sequence

ATGCCTGGAATTATCGTGGATGGAGTTGTCACAGAGGAGGCACAAAACGAGGTGAACTCC
TCGCAGAACAAGGACAATTCGTCCGCCCCAAGATCGCCGGTGGCTTCGAAAAGCATGCAC
AGCGAGGCGCTGGAGATGCATGTGGAGGGTTCCGGCGCCGGGGAGCCATCGATTGAGCAG
CTCTACAACAATGTGTGCGAGATGGAGAGCTCAAGCGAGGGTGGATCCCCCTCGCGGGAG
AGCTTCGGCTCCGACGGGGAGGAATCGAGGATCGACTCGGAGCTTCGCCACCTTGTTGCT
GGGGAGATGGAGGCCATGAAGGTAATTGAGGAGGAGGAAGGGGAAGGGAGTGGTAATGCC
GCTAATGCGGTAACCGCAGCTGAGAATGGGACTCCCGTCAAGGCGATGTCTTCGAATTCA
TCGAAGAAGTCGTCGAAAAAGGCTGCGAAATCACAGCTTGAATCTGAGTCTTCTGTTGGT
CCTAATGGCAAGGCATCCACCGAGGAAGGTGAGGCCGAGGTCAGCAAACCCGGAAGCCGA
GTTGGCCGTCGACGGAAAGCTAGTCCTAATCCACACAATGGGACTGAAGATGCTGGGCTT
AATAATCCAGACCTTGGTCCATTTCTTCTTAAGCATGCGAGAGATTTGATTGCCTCCGAT
AATCCTCGTCGGGCACTGAAATATGCTCTTCGTGCCACCAAGTCATTCGAGAAATGTGCT
GGTGGAAAACCGAGCTTGAACTTGGTAATGAGTTTGCATGTTGTGGCAGCAATCTACTGC
AACTTGGGAAAGTATGACGAGGCTGTACCTGTACTACAGCGCTCCCTTGAGATCCCTGTA
ATTGAAGAAGGTCAGGAGCATGCTCTTGCGAAGTTCTCTGGGTGCATGCAATTGGGGGAC
ACCTATGGGATGCTAGGCCAGACTGCGCTATCACTGCAATGGTATGCCGCAGGGCTTGAA
ATTCAGAAGCAGACATTGGGGGAGCAGGATCCAAGAGTTGGAGAGACTTGTCGGTACTTG
GCTGAAGCTCATGTGCAGGCATTACAACTTGATGAAGCACAAAGATTGTGCCAGAAGGCT
CTTGATATCCACAGGGAGAATGGTGAGCCAGCCTCATTAGAAGAAACAGCTGATAGGAGG
CTGATGGGTCTTATCTGTGACACAAAGGGTGATCATGAAGCTGCCTTAGAGCATCTGGTG
ATGGCTAGCATGGCCATGGTGGCCAATGGCCAGGAAACTGAGGTAGCATCAGTAGATTGC
AGCATTGGTGACATTTATCTCTCCTTGGGCCGGTATGATGAGGCCGTGTTTTCTTATCAG
AAAGCTCTTACTGTATTCAAGACTAGCAAAGGGGAGAATCATGCAACGGTGGCCTCTGTT
TTTGTGCGGCTTGCGGATCTATACAACAAGACAGGGAAGCTGAGGGAGTCAAAATCATAC
TGTGAAAATGCCCTTAAAATTTATCAGAAACCTATTCCAGGAACTTCATTGGAAGAAATT
GCTACCGGTTTAACTGATGTTTCAGCCATTTATGAAACCATGAATGAGCATGAGCAAGCA
CTCAAGTTACTCCAGAAGGCCTTAAAAATGTACAACAATTCTGCCGGTCAACAGAGCACA
ATTGCTGGAATTGAGGCTCAGATGGGCGTCTTGCACTATATTTTGGGGAACTATGGAGAA
GCTTATGACTCATTCAAGAGTGCGATTGCAAAGCTCCGCACTTGTGGTGAGAAAAAGACG
GCCTTCTTTGGTGTTGCCCTGAACCAGATGGGGTTGGCATGTGTTCAAAGATACTCGATA
AATGAAGCTGCAGAACTGTTTGAGGAAGCTAGAGCTGTTCTGGAGCAAGAATATGGACCT
TATCATCCAGATACTTTAGGAGTGTACAGCAATCTTGCTGGAACTTATGATGCCATGGGA
AGGCTGGATGAGGCCATTGAGATCTTGGAACATGTAGTTGGGATGCGCGAAGAGAAGCTG
GGCACAGCTAACCCAGACGTCGATGACGAAAAGCGGAGGCTTGCAGAGCTACTCAAGGAG
GCTGGTCGGGGGAGAAGCAGGAAGGCAAAATCCCTGGAGAATCTGCTCGAGACCAACCCA
TATACTGTCACGAAGAGAGGTACAGTTGCAGCATGA

Peptide Sequence

PEP ID

Os02t0708400-01
PEP Infomation

pep chromosome:IRGSP-1.0:2:29287709:29291570:-1 gene:Os02g0708400 transcript:Os02t0708400-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tetratricopeptide-like helical domain containing protein. (Os02t0708400-01)
Sequence

MPGIIVDGVVTEEAQNEVNSSQNKDNSSAPRSPVASKSMHSEALEMHVEGSGAGEPSIEQ
LYNNVCEMESSSEGGSPSRESFGSDGEESRIDSELRHLVAGEMEAMKVIEEEEGEGSGNA
ANAVTAAENGTPVKAMSSNSSKKSSKKAAKSQLESESSVGPNGKASTEEGEAEVSKPGSR
VGRRRKASPNPHNGTEDAGLNNPDLGPFLLKHARDLIASDNPRRALKYALRATKSFEKCA
GGKPSLNLVMSLHVVAAIYCNLGKYDEAVPVLQRSLEIPVIEEGQEHALAKFSGCMQLGD
TYGMLGQTALSLQWYAAGLEIQKQTLGEQDPRVGETCRYLAEAHVQALQLDEAQRLCQKA
LDIHRENGEPASLEETADRRLMGLICDTKGDHEAALEHLVMASMAMVANGQETEVASVDC
SIGDIYLSLGRYDEAVFSYQKALTVFKTSKGENHATVASVFVRLADLYNKTGKLRESKSY
CENALKIYQKPIPGTSLEEIATGLTDVSAIYETMNEHEQALKLLQKALKMYNNSAGQQST
IAGIEAQMGVLHYILGNYGEAYDSFKSAIAKLRTCGEKKTAFFGVALNQMGLACVQRYSI
NEAAELFEEARAVLEQEYGPYHPDTLGVYSNLAGTYDAMGRLDEAIEILEHVVGMREEKL
GTANPDVDDEKRRLAELLKEAGRGRSRKAKSLENLLETNPYTVTKRGTVAA

Transcript Sequence

Transcript ID

Os02t0708400-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:29287709:29291570:-1 gene:Os02g0708400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tetratricopeptide-like helical domain containing protein. (Os02t0708400-01)
Sequence

CCCCTCTCTCTCTCTCCTCGCGGCTGCAAATCGAGAGGAAGAGGAAGACGAGAGGAGAGG
AGAGCGCGTGGCGTCGAGAGGAAAAGCCGGAGCCATTGAGCCGCAGGCCTCCTCCTCGCG
CGCGAGCGCGGCCGGCATCTCCGGCTCGGATCGAGCTTGAAGGAGAAATTGGGGGGCTTG
AGCTGAAAGATCTTGGTACAATTCTCCCGCAAAATGCCTGGAATTATCGTGGATGGAGTT
GTCACAGAGGAGGCACAAAACGAGGTGAACTCCTCGCAGAACAAGGACAATTCGTCCGCC
CCAAGATCGCCGGTGGCTTCGAAAAGCATGCACAGCGAGGCGCTGGAGATGCATGTGGAG
GGTTCCGGCGCCGGGGAGCCATCGATTGAGCAGCTCTACAACAATGTGTGCGAGATGGAG
AGCTCAAGCGAGGGTGGATCCCCCTCGCGGGAGAGCTTCGGCTCCGACGGGGAGGAATCG
AGGATCGACTCGGAGCTTCGCCACCTTGTTGCTGGGGAGATGGAGGCCATGAAGGTAATT
GAGGAGGAGGAAGGGGAAGGGAGTGGTAATGCCGCTAATGCGGTAACCGCAGCTGAGAAT
GGGACTCCCGTCAAGGCGATGTCTTCGAATTCATCGAAGAAGTCGTCGAAAAAGGCTGCG
AAATCACAGCTTGAATCTGAGTCTTCTGTTGGTCCTAATGGCAAGGCATCCACCGAGGAA
GGTGAGGCCGAGGTCAGCAAACCCGGAAGCCGAGTTGGCCGTCGACGGAAAGCTAGTCCT
AATCCACACAATGGGACTGAAGATGCTGGGCTTAATAATCCAGACCTTGGTCCATTTCTT
CTTAAGCATGCGAGAGATTTGATTGCCTCCGATAATCCTCGTCGGGCACTGAAATATGCT
CTTCGTGCCACCAAGTCATTCGAGAAATGTGCTGGTGGAAAACCGAGCTTGAACTTGGTA
ATGAGTTTGCATGTTGTGGCAGCAATCTACTGCAACTTGGGAAAGTATGACGAGGCTGTA
CCTGTACTACAGCGCTCCCTTGAGATCCCTGTAATTGAAGAAGGTCAGGAGCATGCTCTT
GCGAAGTTCTCTGGGTGCATGCAATTGGGGGACACCTATGGGATGCTAGGCCAGACTGCG
CTATCACTGCAATGGTATGCCGCAGGGCTTGAAATTCAGAAGCAGACATTGGGGGAGCAG
GATCCAAGAGTTGGAGAGACTTGTCGGTACTTGGCTGAAGCTCATGTGCAGGCATTACAA
CTTGATGAAGCACAAAGATTGTGCCAGAAGGCTCTTGATATCCACAGGGAGAATGGTGAG
CCAGCCTCATTAGAAGAAACAGCTGATAGGAGGCTGATGGGTCTTATCTGTGACACAAAG
GGTGATCATGAAGCTGCCTTAGAGCATCTGGTGATGGCTAGCATGGCCATGGTGGCCAAT
GGCCAGGAAACTGAGGTAGCATCAGTAGATTGCAGCATTGGTGACATTTATCTCTCCTTG
GGCCGGTATGATGAGGCCGTGTTTTCTTATCAGAAAGCTCTTACTGTATTCAAGACTAGC
AAAGGGGAGAATCATGCAACGGTGGCCTCTGTTTTTGTGCGGCTTGCGGATCTATACAAC
AAGACAGGGAAGCTGAGGGAGTCAAAATCATACTGTGAAAATGCCCTTAAAATTTATCAG
AAACCTATTCCAGGAACTTCATTGGAAGAAATTGCTACCGGTTTAACTGATGTTTCAGCC
ATTTATGAAACCATGAATGAGCATGAGCAAGCACTCAAGTTACTCCAGAAGGCCTTAAAA
ATGTACAACAATTCTGCCGGTCAACAGAGCACAATTGCTGGAATTGAGGCTCAGATGGGC
GTCTTGCACTATATTTTGGGGAACTATGGAGAAGCTTATGACTCATTCAAGAGTGCGATT
GCAAAGCTCCGCACTTGTGGTGAGAAAAAGACGGCCTTCTTTGGTGTTGCCCTGAACCAG
ATGGGGTTGGCATGTGTTCAAAGATACTCGATAAATGAAGCTGCAGAACTGTTTGAGGAA
GCTAGAGCTGTTCTGGAGCAAGAATATGGACCTTATCATCCAGATACTTTAGGAGTGTAC
AGCAATCTTGCTGGAACTTATGATGCCATGGGAAGGCTGGATGAGGCCATTGAGATCTTG
GAACATGTAGTTGGGATGCGCGAAGAGAAGCTGGGCACAGCTAACCCAGACGTCGATGAC
GAAAAGCGGAGGCTTGCAGAGCTACTCAAGGAGGCTGGTCGGGGGAGAAGCAGGAAGGCA
AAATCCCTGGAGAATCTGCTCGAGACCAACCCATATACTGTCACGAAGAGAGGTACAGTT
GCAGCATGAGGCACACACTGCTTTGCGAGGAGAAGCTTGATGCAAGCATGACGCTAAGGT
GTATCAAATTGGGCTGTTTTTCTTTTTTCAGATTTGGTGAGAGGGGTAATTGAAAATAGG
ATTTGTTTTGAGAATCTAGAAATGTCAAATGTTCTGATTAATTGTTGTAAAGTTGCAAAG
TATGATTCGCTACCACTTGTTCCCTGCTCATGGCTCTTCACCGTGCTTGGGAAGTAAAGC
GCTGCTTCCATGCTATACGCAGCTGAGCTTTTATAACTTTATATTGTAGACAGTGTGAGA
CTGAACAGCTTGGTTGGTTGATATTGCAGCAGATATCATGCATAATAAATTGTACAGGCA
TATTACGGT