Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os02t0704000-01
CDS Infomation	cds chromosome:IRGSP-1.0:2:29026099:29028176:-1 gene:Os02g0704000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:9-CIS-EPOXYCAROTENOID DIOXYGENASE 1 description:Carotenoid oxygenase family protein. (Os02t0704000-01)
Sequence	ATGCAAAGGATTTGCCCTGCTCACTGCTCGGTCACTCACTCACTCACCATGAAGTCCATG AGGCTTTCCTACATCCCTCCTGCTGCTTCTGCTGCTCCACAGAGCCCCAGCTATGGCAGG AAGAAGAACGCCTCCGCCGCTCCGCCATCGGCTGCCGCCTCCACCACCGTTCTCACCTCC CCGCTGGTGACCACCACCCGCACTCCGAAGCAGACCGAGCAAGAGGACGAGCAGTTGGTA GCCAAGACCAAGACTACGAGAACTGTTATTGCTACGACGAATGGCAGGGCGGCGCCGAGC CAGTCTCGGCCTCGCCGCCGGCCTGCCCCCGCCGCCGCGGCGTCGGCCGCTTCGCTGCCG ATGACGTTCTGCAACGCGCTGGAGGAGGTGATCAACACGTTCATCGACCCGCCGGCGCTT CGGCCGGCGGTGGACCCGCGGAACGTGCTGACCAGCAACTTCGTGCCCGTGGACGAGCTG CCGCCGACGCCCTGCCCCGTCGTGCGCGGCGCCATCCCGCGCTGCCTCGCCGGCGGCGCC TACATCCGCAACGGGCCCAACCCGCAGCACCTCCCGCGCGGGCCGCACCACCTGTTCGAC GGCGACGGCATGCTGCACTCCCTCCTCCTCCCGTCGCCCGCGTCGTCCGGCGACGACCCC GTCCTGTGCTCGCGCTACGTGCAGACGTACAAGTACCTCGTGGAGCGCGACGCCGGCGCG CCCGTCCTGCCCAACGTCTTCTCCGGCTTCCACGGCGTGGCCGGGATGGCGCGCGGCGCC GTCGTGGCGGCCAGGGTCCTGACCGGGCAGATGAATCCGTTGGAGGGCGTCGGGCTCGCC AACACCAGCCTCGCCTACTTCGCCGGCCGCCTCTACGCGCTCGGCGAGTCCGACCTCCCC TACGCCGTGCGCGTCCACCCGGACACCGGCGAGGTGACCACGCACGGCAGGTGCGACTTC GGCGGCCGCCTCGTCATGGGCATGACCGCGCACCCCAAGAAGGACCCCGTCACCGGCGAG CTCTTCGCGTTCCGCTACGGCCCCGTGCCGCCGTTCGTGACGTACTTCCGGTTCGACCCG GCCGGCAACAAGGGCGCCGACGTGCCCATCTTCTCCGTGCAGCAGCCGTCGTTCCTGCAC GACTTCGCCATCACCGAGCGGTACGCCATCTTCCCGGAGATCCAGATCGTGATGAAGCCC ATGGACATGGTGGTGGGCGGCGGCTCGCCCGTGGGGTCGGACCCCGGCAAGGTGCCCCGC CTCGGCGTGATCCCGCGCTACGCCACCGACGAGTCGGAGATGCGGTGGTTCGAGGTGCCG GGCTTCAACATCATGCACTCGGTGAACGCGTGGGAGGAGGCCGGCGGCGAGGAGCTGGTG CTGGTGGCGCCCAACGTCCTCTCCATCGAGCACGCCCTGGAGCACATGGAGCTAGTGCAC TCCTGCGTCGAGAAGGTGCGCATCAACCTCCGCACCGGCGTCGTCACGCGCACCCCGCTC GCCGCCGGGAACTTCGACTTCCCCGTGATCAACCCGGCTTTCCTCGGCCGCCGCAACAGG TACGGCTACTTCGGCGTCGGCGACCCCGCGCCCAAGATCGGCGGCGTGGCCAAGCTCGAC TTCGACCGCGCCGGCGAGGGCGACTGCACCGTGGCGCAGCGCGACTTCGGGCCCGGGTGC TTCGCCGGCGAACCGTTCTTCGTGGCCGACGACGTCGAGGGCAACGGCAACGAGGATGAC GGGTACTTGGTGTGCTACGTCCACGACGAGGCCACCGGCGAGAACCGGTTCGTGGTGATG GACGCGCGGTCGCCGGACCTGGAGATCGTCGCGGAGGTGCAGCTGCCCGGACGCGTCCCC TACGGCTTCCATGGCCTGTTCGTCACGCAGGCCGAGCTCCAGTCACAGCACCAATGA

Peptide Sequence

PEP ID	Os02t0704000-01
PEP Infomation	pep chromosome:IRGSP-1.0:2:29026099:29028176:-1 gene:Os02g0704000 transcript:Os02t0704000-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:9-CIS-EPOXYCAROTENOID DIOXYGENASE 1 description:Carotenoid oxygenase family protein. (Os02t0704000-01)
Sequence	MQRICPAHCSVTHSLTMKSMRLSYIPPAASAAPQSPSYGRKKNASAAPPSAAASTTVLTS PLVTTTRTPKQTEQEDEQLVAKTKTTRTVIATTNGRAAPSQSRPRRRPAPAAAASAASLP MTFCNALEEVINTFIDPPALRPAVDPRNVLTSNFVPVDELPPTPCPVVRGAIPRCLAGGA YIRNGPNPQHLPRGPHHLFDGDGMLHSLLLPSPASSGDDPVLCSRYVQTYKYLVERDAGA PVLPNVFSGFHGVAGMARGAVVAARVLTGQMNPLEGVGLANTSLAYFAGRLYALGESDLP YAVRVHPDTGEVTTHGRCDFGGRLVMGMTAHPKKDPVTGELFAFRYGPVPPFVTYFRFDP AGNKGADVPIFSVQQPSFLHDFAITERYAIFPEIQIVMKPMDMVVGGGSPVGSDPGKVPR LGVIPRYATDESEMRWFEVPGFNIMHSVNAWEEAGGEELVLVAPNVLSIEHALEHMELVH SCVEKVRINLRTGVVTRTPLAAGNFDFPVINPAFLGRRNRYGYFGVGDPAPKIGGVAKLD FDRAGEGDCTVAQRDFGPGCFAGEPFFVADDVEGNGNEDDGYLVCYVHDEATGENRFVVM DARSPDLEIVAEVQLPGRVPYGFHGLFVTQAELQSQHQ

Transcript Sequence

Transcript ID	Os02t0704000-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:2:29026099:29028176:-1 gene:Os02g0704000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:9-CIS-EPOXYCAROTENOID DIOXYGENASE 1 description:Carotenoid oxygenase family protein. (Os02t0704000-01)
Sequence	AGTGCAGTAGTAGTAGCATGCAAAGGATTTGCCCTGCTCACTGCTCGGTCACTCACTCAC TCACCATGAAGTCCATGAGGCTTTCCTACATCCCTCCTGCTGCTTCTGCTGCTCCACAGA GCCCCAGCTATGGCAGGAAGAAGAACGCCTCCGCCGCTCCGCCATCGGCTGCCGCCTCCA CCACCGTTCTCACCTCCCCGCTGGTGACCACCACCCGCACTCCGAAGCAGACCGAGCAAG AGGACGAGCAGTTGGTAGCCAAGACCAAGACTACGAGAACTGTTATTGCTACGACGAATG GCAGGGCGGCGCCGAGCCAGTCTCGGCCTCGCCGCCGGCCTGCCCCCGCCGCCGCGGCGT CGGCCGCTTCGCTGCCGATGACGTTCTGCAACGCGCTGGAGGAGGTGATCAACACGTTCA TCGACCCGCCGGCGCTTCGGCCGGCGGTGGACCCGCGGAACGTGCTGACCAGCAACTTCG TGCCCGTGGACGAGCTGCCGCCGACGCCCTGCCCCGTCGTGCGCGGCGCCATCCCGCGCT GCCTCGCCGGCGGCGCCTACATCCGCAACGGGCCCAACCCGCAGCACCTCCCGCGCGGGC CGCACCACCTGTTCGACGGCGACGGCATGCTGCACTCCCTCCTCCTCCCGTCGCCCGCGT CGTCCGGCGACGACCCCGTCCTGTGCTCGCGCTACGTGCAGACGTACAAGTACCTCGTGG AGCGCGACGCCGGCGCGCCCGTCCTGCCCAACGTCTTCTCCGGCTTCCACGGCGTGGCCG GGATGGCGCGCGGCGCCGTCGTGGCGGCCAGGGTCCTGACCGGGCAGATGAATCCGTTGG AGGGCGTCGGGCTCGCCAACACCAGCCTCGCCTACTTCGCCGGCCGCCTCTACGCGCTCG GCGAGTCCGACCTCCCCTACGCCGTGCGCGTCCACCCGGACACCGGCGAGGTGACCACGC ACGGCAGGTGCGACTTCGGCGGCCGCCTCGTCATGGGCATGACCGCGCACCCCAAGAAGG ACCCCGTCACCGGCGAGCTCTTCGCGTTCCGCTACGGCCCCGTGCCGCCGTTCGTGACGT ACTTCCGGTTCGACCCGGCCGGCAACAAGGGCGCCGACGTGCCCATCTTCTCCGTGCAGC AGCCGTCGTTCCTGCACGACTTCGCCATCACCGAGCGGTACGCCATCTTCCCGGAGATCC AGATCGTGATGAAGCCCATGGACATGGTGGTGGGCGGCGGCTCGCCCGTGGGGTCGGACC CCGGCAAGGTGCCCCGCCTCGGCGTGATCCCGCGCTACGCCACCGACGAGTCGGAGATGC GGTGGTTCGAGGTGCCGGGCTTCAACATCATGCACTCGGTGAACGCGTGGGAGGAGGCCG GCGGCGAGGAGCTGGTGCTGGTGGCGCCCAACGTCCTCTCCATCGAGCACGCCCTGGAGC ACATGGAGCTAGTGCACTCCTGCGTCGAGAAGGTGCGCATCAACCTCCGCACCGGCGTCG TCACGCGCACCCCGCTCGCCGCCGGGAACTTCGACTTCCCCGTGATCAACCCGGCTTTCC TCGGCCGCCGCAACAGGTACGGCTACTTCGGCGTCGGCGACCCCGCGCCCAAGATCGGCG GCGTGGCCAAGCTCGACTTCGACCGCGCCGGCGAGGGCGACTGCACCGTGGCGCAGCGCG ACTTCGGGCCCGGGTGCTTCGCCGGCGAACCGTTCTTCGTGGCCGACGACGTCGAGGGCA ACGGCAACGAGGATGACGGGTACTTGGTGTGCTACGTCCACGACGAGGCCACCGGCGAGA ACCGGTTCGTGGTGATGGACGCGCGGTCGCCGGACCTGGAGATCGTCGCGGAGGTGCAGC TGCCCGGACGCGTCCCCTACGGCTTCCATGGCCTGTTCGTCACGCAGGCCGAGCTCCAGT CACAGCACCAATGATACAAACCAACGTAGCAATGTATAGAATTCACGTATACATTTTCCA TACGAAATTACGAGTTACTGTGGAACACGTAGTATAAGTGCACACATACTTCGAGAAAAT TATGTAGAGTACATATGAAATGAAAGAATGATTTTAAC