Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0692000-01
CDS Infomation

cds chromosome:IRGSP-1.0:2:28421416:28423535:-1 gene:Os02g0692000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to RING finger family protein. (Os02t0692000-01)
Sequence

ATGGCGGCAATGGCCTCTTCTCCCCCTACAACACCAAATCTCGGTTCGCAGCCTACATGG
GTGCCCTATGAGCCAACCAGGGATTGCTCCCAGGGCCTCTGCAGCATGTACTGCCCGCAG
TGGTGCTACTTCATCTTCCCGCCACCGCCGCCGGCCTTCGACATCACCGGCTCCAGCTCC
GACGACTCCTCCGGCCCAACCTTCTCGCCGCTCGTCATCGCCATCATCGGGGTGCTCGCG
AGCGCCTTCCTCCTCGTCAGCTACTACACCATCATATCCAAGTACTGCGGCACCTTCAGC
TCCCTCCGGAACAGACTCCTTGGCTCCAGCGCTCACCGCGGCAGCGGCGGCGGCGCCGAC
GGCGGAGACAATTCCAGGAGCCAGGAGCCGTGGAGCGTCGCGCTGTCGGACGGGATGGAC
GAGACGCTGATCAACAAGATCACAGTGTGCAAGTACAGGCGCGGCGACGGCTTCGTGGAC
AGCACGGACTGCTCCGTCTGCCTCGGCGAGTTCCGCGAAGGCGAGAGCCTCCGGCTGCTG
CCCAAGTGCAGCCACGCCTTCCACGTCCCGTGCATCGACACCTGGCTCAAGTCCCACTCC
AACTGCCCGCTCTGCCGCTGCAACATCGCGTTCGTCACCGTCGGGATGGTCTCGCCGGAG
CCGGAGGCCCGCGTTCCACGGGAGGATAGGAGAGACAACCACGAGCTGGTCCTGACAATT
GACAACCCGGAGCATGTGCGCGAGGAGCCACAGAACGTGGTGACCGGTGTCGCCGTCGGC
AACGGCGGCCGCAACCACGAGGCGAAGGATGGTCCGGGGAGGTCGGAAGATGCAAATGGC
ACAGCTGAGATCAGAGAAGACGGCGCCTTGATGCCGCCCACAAGGGCGCCGTCGTCGTTG
TCAGACACGCACCGTGAAGGCCGGATGTCCATTGCCGATGTCCTGCAGGCGAGCCTGGAA
GACGAGCTGATGGTGGCCAGGGAGAGCGGCCTCCTGGCAGGCTCTTCGGGGTCCTCAAGA
CGGTGTCACGGGGAGCACAGCAAGGACGGCGGCGGCCGCAGTGGCCGGGCATTGCCGGAC
GGCGCGAATATGAAGAGATTGGCGCCGGCCGGGAGATCATGCTTCAGCAGCAGGAGTGGC
AGAGGAAAGGACTCCGTTCTTCCAATGTGA

Peptide Sequence

PEP ID

Os02t0692000-01
PEP Infomation

pep chromosome:IRGSP-1.0:2:28421416:28423535:-1 gene:Os02g0692000 transcript:Os02t0692000-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to RING finger family protein. (Os02t0692000-01)
Sequence

MAAMASSPPTTPNLGSQPTWVPYEPTRDCSQGLCSMYCPQWCYFIFPPPPPAFDITGSSS
DDSSGPTFSPLVIAIIGVLASAFLLVSYYTIISKYCGTFSSLRNRLLGSSAHRGSGGGAD
GGDNSRSQEPWSVALSDGMDETLINKITVCKYRRGDGFVDSTDCSVCLGEFREGESLRLL
PKCSHAFHVPCIDTWLKSHSNCPLCRCNIAFVTVGMVSPEPEARVPREDRRDNHELVLTI
DNPEHVREEPQNVVTGVAVGNGGRNHEAKDGPGRSEDANGTAEIREDGALMPPTRAPSSL
SDTHREGRMSIADVLQASLEDELMVARESGLLAGSSGSSRRCHGEHSKDGGGRSGRALPD
GANMKRLAPAGRSCFSSRSGRGKDSVLPM

Transcript Sequence

Transcript ID

Os02t0692000-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:28421416:28423535:-1 gene:Os02g0692000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to RING finger family protein. (Os02t0692000-01)
Sequence

ACCGCCACCTCCCTCCTCCTCATCAAGCATTCAGGCTCTCCTATCCCAAAATGCTTTGCT
TTCCAAGCAAGCACACTCCCTCTCTGCTTTGGAGATTAGCTCTCGTTTCTCTTAGTAGCA
GCAGCTGGTGTGGCAGCATCTCATCTCATGATCTCTGATTCTTCACGGCTGCTGCTCTCT
TCCCATCTCATCTCACATTTCCCAGGGCCACGAAAGAACTGGGTTGTACTGAAGTCCAAG
CAGAGCCACCTACCTTCTCTTGCTTCTCTCATCTCTTGCCACAATTATTGGACCGGAAAT
TCATGAAGATCCTCTGCCGGTGCTAGAACATGGCAGTCTGGGTATGGCCTGAGCAGTAAA
GATTTGTTCATCTTTGTTTATTGGGATTTCTTCTTTGTCACCTTCATCCCTTTAGACTCT
CCCCTTTAGACCTCTAGTGTTGCTGCTGTGCTTGTGTATCCATGGCGGCAATGGCCTCTT
CTCCCCCTACAACACCAAATCTCGGTTCGCAGCCTACATGGGTGCCCTATGAGCCAACCA
GGGATTGCTCCCAGGGCCTCTGCAGCATGTACTGCCCGCAGTGGTGCTACTTCATCTTCC
CGCCACCGCCGCCGGCCTTCGACATCACCGGCTCCAGCTCCGACGACTCCTCCGGCCCAA
CCTTCTCGCCGCTCGTCATCGCCATCATCGGGGTGCTCGCGAGCGCCTTCCTCCTCGTCA
GCTACTACACCATCATATCCAAGTACTGCGGCACCTTCAGCTCCCTCCGGAACAGACTCC
TTGGCTCCAGCGCTCACCGCGGCAGCGGCGGCGGCGCCGACGGCGGAGACAATTCCAGGA
GCCAGGAGCCGTGGAGCGTCGCGCTGTCGGACGGGATGGACGAGACGCTGATCAACAAGA
TCACAGTGTGCAAGTACAGGCGCGGCGACGGCTTCGTGGACAGCACGGACTGCTCCGTCT
GCCTCGGCGAGTTCCGCGAAGGCGAGAGCCTCCGGCTGCTGCCCAAGTGCAGCCACGCCT
TCCACGTCCCGTGCATCGACACCTGGCTCAAGTCCCACTCCAACTGCCCGCTCTGCCGCT
GCAACATCGCGTTCGTCACCGTCGGGATGGTCTCGCCGGAGCCGGAGGCCCGCGTTCCAC
GGGAGGATAGGAGAGACAACCACGAGCTGGTCCTGACAATTGACAACCCGGAGCATGTGC
GCGAGGAGCCACAGAACGTGGTGACCGGTGTCGCCGTCGGCAACGGCGGCCGCAACCACG
AGGCGAAGGATGGTCCGGGGAGGTCGGAAGATGCAAATGGCACAGCTGAGATCAGAGAAG
ACGGCGCCTTGATGCCGCCCACAAGGGCGCCGTCGTCGTTGTCAGACACGCACCGTGAAG
GCCGGATGTCCATTGCCGATGTCCTGCAGGCGAGCCTGGAAGACGAGCTGATGGTGGCCA
GGGAGAGCGGCCTCCTGGCAGGCTCTTCGGGGTCCTCAAGACGGTGTCACGGGGAGCACA
GCAAGGACGGCGGCGGCCGCAGTGGCCGGGCATTGCCGGACGGCGCGAATATGAAGAGAT
TGGCGCCGGCCGGGAGATCATGCTTCAGCAGCAGGAGTGGCAGAGGAAAGGACTCCGTTC
TTCCAATGTGAGGCAACCAAGGTGGTTCTTTTGACAGGGAAACATGACAAGAAACTTTTG
TGTGTTCTTCCGGTGGAGATCAAATGATCAATGTGCCGGCTGCATCTGCGATGCGCGTAT
GGGGATTTCATCCTGTTTTGATCACTTCCCGTGATGCCCACATGCTGAAGAAATCCTTCT
CCTGCAATGCATGGTGAGTGGTGAGATCTCCTACATGTTTCTACTAGATAACTGTATAGG
GTTTGAGAAGTTTTCCTTTTTCTTTCTTTCTTCCATGTTGCCACCCCTCTCTATACAATT
GGGATCTGCTCCAGAGCAGCCTCTCTGGATTAGTGAGTTAGGCATTACTAGATCAAAGAC
TCTCCAAGTGAGAAGTGTGACACTTTCAGTTCTTTTTCCACCTCCATTTTTGTGTGCTTT
TGCGTCTACCATTTTATCTTCCTAGGTGTCATTGTGGCACAATTTGGGGATTGAATGAGA
ACCGTGGCCAATTCAGCTTG