Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0684000-00
CDS Infomation

cds chromosome:IRGSP-1.0:2:27965554:27966300:1 gene:Os02g0684000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tetratricopeptide-like helical domain containing protein. (Os02t0684000-00)
Sequence

ATGGCCTTCCTCGCCGCTGCCTCGACCCGCGCGCCGTTCGCCGTCGCGGCGTCCTCCTCC
CGGCGCCGCACCGTCCTCGCCGCGGCCGTCAAGGCCACCGGCGGCTCCAACCCGGCCGCC
CCGCACCCCGTCCTCTCCTCCCTCCGCCTCGCCGCCTCCGCCGCCGTCATCCTCGCCGCC
ACCTCCCCGGCGGCCATCGCGTGCACCCCGGCACCGCCCCCTCCTCCCCCGGAGGTAACC
GTCGCGGCCTCGCCCGACGATCCCGTCACCGACGACCCCCACCCCTTCGAGAAGCTAATC
GTCGAGACCGCCGCGCTCGCCAGCTTCGGCGGCGCGGAGGCCGCGCGGGCCCGCCTCTCC
GCCGCCGCCGCCGCCGCCGCCGGAGTCGTCGGCGGCCGCGAGCAATACGCCCGCCTCCTC
GCCGCGCAGGAGCTCTTCGTGGACGGCAAGGTGGACGACGCGATCGCCGCCTTCGAGGAG
CTCGCCCGGGAGGACCCCGGCGACTACCGCCCCGTGTTCTGCCAATGCGTGCTCTACTCC
GTTCTGGGCAGGGCCGCCGAGTCGGAATCGATGCTCCGGCGCTGCCGCGAGCTCGCCGGC
GAAGAATCCGTCGCCGATTTCGTAATGCCGGTCTCGCCGTTGCCGGTCGATTCGTCGGAG
GCGGAAGCGGAGCCGGATTCGCCGGAGGCAGAGACGGAGAAGCTGTGA

Peptide Sequence

PEP ID

Os02t0684000-00
PEP Infomation

pep chromosome:IRGSP-1.0:2:27965554:27966300:1 gene:Os02g0684000 transcript:Os02t0684000-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tetratricopeptide-like helical domain containing protein. (Os02t0684000-00)
Sequence

MAFLAAASTRAPFAVAASSSRRRTVLAAAVKATGGSNPAAPHPVLSSLRLAASAAVILAA
TSPAAIACTPAPPPPPPEVTVAASPDDPVTDDPHPFEKLIVETAALASFGGAEAARARLS
AAAAAAAGVVGGREQYARLLAAQELFVDGKVDDAIAAFEELAREDPGDYRPVFCQCVLYS
VLGRAAESESMLRRCRELAGEESVADFVMPVSPLPVDSSEAEAEPDSPEAETEKL

Transcript Sequence

Transcript ID

Os02t0684000-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:27965554:27966300:1 gene:Os02g0684000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tetratricopeptide-like helical domain containing protein. (Os02t0684000-00)
Sequence

TGGAAATCTCCGAGCCGCGAGCAAACCCTAGCCGCCGCCATGGCCTTCCTCGCCGCTGCC
TCGACCCGCGCGCCGTTCGCCGTCGCGGCGTCCTCCTCCCGGCGCCGCACCGTCCTCGCC
GCGGCCGTCAAGGCCACCGGCGGCTCCAACCCGGCCGCCCCGCACCCCGTCCTCTCCTCC
CTCCGCCTCGCCGCCTCCGCCGCCGTCATCCTCGCCGCCACCTCCCCGGCGGCCATCGCG
TGCACCCCGGCACCGCCCCCTCCTCCCCCGGAGGTAACCGTCGCGGCCTCGCCCGACGAT
CCCGTCACCGACGACCCCCACCCCTTCGAGAAGCTAATCGTCGAGACCGCCGCGCTCGCC
AGCTTCGGCGGCGCGGAGGCCGCGCGGGCCCGCCTCTCCGCCGCCGCCGCCGCCGCCGCC
GGAGTCGTCGGCGGCCGCGAGCAATACGCCCGCCTCCTCGCCGCGCAGGAGCTCTTCGTG
GACGGCAAGGTGGACGACGCGATCGCCGCCTTCGAGGAGCTCGCCCGGGAGGACCCCGGC
GACTACCGCCCCGTGTTCTGCCAATGCGTGCTCTACTCCGTTCTGGGCAGGGCCGCCGAG
TCGGAATCGATGCTCCGGCGCTGCCGCGAGCTCGCCGGCGAAGAATCCGTCGCCGATTTC
GTAATGCCGGTCTCGCCGTTGCCGGTCGATTCGTCGGAGGCGGAAGCGGAGCCGGATTCG
CCGGAGGCAGAGACGGAGAAGCTGTGA