Gene sequences

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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os02t0682500-01
CDS Infomation	cds chromosome:IRGSP-1.0:2:27906512:27909385:-1 gene:Os02g0682500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:TRANSPARENT TESTA GLABRA1A, TRANSPARENT TESTA GLABRA 1A description:Similar to TRANSPARENT TESTA GLABRA 1 protein (TTG1 protein). (Os02t0682500-01)
Sequence	ATGGAGCAGCCCAAGCCGCCGTCGGTAGCCGCCTCGGCGGCGGAGGCGCAGAACCCGAAC GCCTTCACCTGCGAGCTGCCGCACTCCATCTACGCGCTGGCCTTCTCCCCCTCCGCGCCC GTCCTCGCCGCCGGCAGCTTCCTCGAGGACCTCCACAACCGCGTCTCCCTCCTCTCCTTC GACCCCGTCCACCCCACCGCCGCCTCCTTCCGCGCCCTCCCCGCGCTCTCCTTCGACCAC CCCTACCCGCCCACCAAGCTCCAGTTCCACCCGCGCGCCGCCTCCGCGCCCCACCTCCTC GCCTCCTCCTCCGACGCGCTGCGGCTCTGGCTTGCCCCGCTCGACGATCTCGCCGCCACC GCCACCGCCGCCGCGCCCGAGCTCCGCTCCGTCCTCGACAACCGCAAGACATCCGCCTCC GAGTTCTGCGCCCCCCTCACCTCCTTCGACTGGAACGAGGCCGAGCCCCGCCGCATCGGG ACCGCCTCCATCGACACCACCTGCACCATCTGGGACATCGAGCGCGGCGTCGTCGAGACG CAGCTCATCGCGCACGACAAGGCCGTGCACGACATCGCCTGGGGGGAGAACGGCATCTTC GCCTCCGTCTCAGCCGACGGCTCCGTCCGCGTCTTCGACCTCCGGGACAAGGAGCATTCC ACCATCTTCTACGAGAGCCCCCGCCCGGACACGCCGCTCCTCAGGCTGGCATGGAACCGC TATGACTTCCACTACATGGCCACCCTGCTCATGGACAGCAGCGCCGTCGTCGTGCTCGAC ATGCGCGCGCCCGGGGTGCCGGTGGCCGAACTACACAGACACCGGGCGTGCGCCAACGCG GTCGCTTGGGCGCCACAGGCCACGAGGCACCTTTGCTCGGCTGGGGACGACGGCCAAGCG CTGATTTGGGAGCTGCCAGCGACGCCCGGCGCAGTGCCGGCCGAGGGGATTGATCCTGTG ATGGTGTATGATGCCGGTGCAGAGATAAACCAACTGCAATGGGCGGCAGCTTACCCGGAG TGGATATCGATTGCCTTTGAGAACAAGGTCCAGCTTCTCAGGGTCTGA

Peptide Sequence

PEP ID	Os02t0682500-01
PEP Infomation	pep chromosome:IRGSP-1.0:2:27906512:27909385:-1 gene:Os02g0682500 transcript:Os02t0682500-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:TRANSPARENT TESTA GLABRA1A, TRANSPARENT TESTA GLABRA 1A description:Similar to TRANSPARENT TESTA GLABRA 1 protein (TTG1 protein). (Os02t0682500-01)
Sequence	MEQPKPPSVAASAAEAQNPNAFTCELPHSIYALAFSPSAPVLAAGSFLEDLHNRVSLLSF DPVHPTAASFRALPALSFDHPYPPTKLQFHPRAASAPHLLASSSDALRLWLAPLDDLAAT ATAAAPELRSVLDNRKTSASEFCAPLTSFDWNEAEPRRIGTASIDTTCTIWDIERGVVET QLIAHDKAVHDIAWGENGIFASVSADGSVRVFDLRDKEHSTIFYESPRPDTPLLRLAWNR YDFHYMATLLMDSSAVVVLDMRAPGVPVAELHRHRACANAVAWAPQATRHLCSAGDDGQA LIWELPATPGAVPAEGIDPVMVYDAGAEINQLQWAAAYPEWISIAFENKVQLLRV

Transcript Sequence

Transcript ID	Os02t0682500-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:2:27906512:27909385:-1 gene:Os02g0682500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:TRANSPARENT TESTA GLABRA1A, TRANSPARENT TESTA GLABRA 1A description:Similar to TRANSPARENT TESTA GLABRA 1 protein (TTG1 protein). (Os02t0682500-01)
Sequence	GGTTGCCGTGGCACGCGCGCGTTGACGCGCCTCCTCCTTCGCCGTCCCTCCTACCTGCTC GGCCTGGCTGCTCGCGTTTTTTACTCTGAACTCCCCGACCCGATCAACCACCGCGGCGCG TGAGTCCATTCATCCCCAAATCCACCCGAGAAAGAAAGGAAGCAAAGCGAAGCGAATCCA ACGATTTTTCCCATGGAGCAGCCCAAGCCGCCGTCGGTAGCCGCCTCGGCGGCGGAGGCG CAGAACCCGAACGCCTTCACCTGCGAGCTGCCGCACTCCATCTACGCGCTGGCCTTCTCC CCCTCCGCGCCCGTCCTCGCCGCCGGCAGCTTCCTCGAGGACCTCCACAACCGCGTCTCC CTCCTCTCCTTCGACCCCGTCCACCCCACCGCCGCCTCCTTCCGCGCCCTCCCCGCGCTC TCCTTCGACCACCCCTACCCGCCCACCAAGCTCCAGTTCCACCCGCGCGCCGCCTCCGCG CCCCACCTCCTCGCCTCCTCCTCCGACGCGCTGCGGCTCTGGCTTGCCCCGCTCGACGAT CTCGCCGCCACCGCCACCGCCGCCGCGCCCGAGCTCCGCTCCGTCCTCGACAACCGCAAG ACATCCGCCTCCGAGTTCTGCGCCCCCCTCACCTCCTTCGACTGGAACGAGGCCGAGCCC CGCCGCATCGGGACCGCCTCCATCGACACCACCTGCACCATCTGGGACATCGAGCGCGGC GTCGTCGAGACGCAGCTCATCGCGCACGACAAGGCCGTGCACGACATCGCCTGGGGGGAG AACGGCATCTTCGCCTCCGTCTCAGCCGACGGCTCCGTCCGCGTCTTCGACCTCCGGGAC AAGGAGCATTCCACCATCTTCTACGAGAGCCCCCGCCCGGACACGCCGCTCCTCAGGCTG GCATGGAACCGCTATGACTTCCACTACATGGCCACCCTGCTCATGGACAGCAGCGCCGTC GTCGTGCTCGACATGCGCGCGCCCGGGGTGCCGGTGGCCGAACTACACAGACACCGGGCG TGCGCCAACGCGGTCGCTTGGGCGCCACAGGCCACGAGGCACCTTTGCTCGGCTGGGGAC GACGGCCAAGCGCTGATTTGGGAGCTGCCAGCGACGCCCGGCGCAGTGCCGGCCGAGGGG ATTGATCCTGTGATGGTGTATGATGCCGGTGCAGAGATAAACCAACTGCAATGGGCGGCA GCTTACCCGGAGTGGATATCGATTGCCTTTGAGAACAAGGTCCAGCTTCTCAGGGTCTGA CGAGATGTTTTCTGAAGGATGTTCGACTCTGAAGCCTTGGCGTTTCTTCTATTCCATCAG TTCACATGTGTCTTATGTTGGTGATCTCTTGATATATTCATTACTCTACTCTCCTGCTAA GCTACGGAAAGCATGAAACTTGCAGCAAGGATTGATCTTGTGGCCAGCTTTAACTTGAAC TTTGTGGAAGTTATCTGTGTTGTGAACATAGAAATATAGATACTAGCCTGCCAGTACAAG AATCAGCTGATGAATGGATAGATGGACTGCTCACTGCTCCTGCATTTAGTCCTGTAGTCA TTTTCGTTTTTCTGCTCGTGCTGTGCTATTCATCGCGCTAACTTTCTTCATTTGCTTCTT GATAACATTATCATATGCTAATATAATATTTCCTGGATATTTGATC