Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0681000-01
CDS Infomation

cds chromosome:IRGSP-1.0:2:27798048:27803714:1 gene:Os02g0681000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Mechanosensitive ion channel MscS domain containing protein. (Os02t0681000-01)
Sequence

ATGTCCAGGACTGCAATAATTTTGCATCGATTTCGTCAAGCAGCTGCCAGTCAGAGCCTC
GTAGAGACTTCTCTTCAGTCATGCCCATATTTTGGTGTTCCTCTGAGATGGTTAAGCTGC
ACAGAGCAAACTTCAAAATGGGAAACTTCTACATCTTATCAGATTGATGACGTAGATCAA
TATTCACCAATTAGTAGTGTAGCAAAAATCTGCACACATCCCCTTTCATCTCACGTAAAC
CACTGTTATCACCACAGTCGTTCACTGGGTTTCTCAAGTGTCTCAAGTTCTCGTCGCATG
TATTCCTCTGATGCTAGAGCCAAGCCAGAAGATTACAAAAATGCTATGGCCAAAGTTTCT
TCTACAGAAACTTCTGAAGTCGGCGCCACAGATCACAGTGGCAACACTTGGATTGATATT
TTAGATAGTGCCCGTCACTCTACCATAGATGCTACTGCAGCCGCACTTAAGAAACTGAAG
GCGATGACTGATCCAATTGTACCTTGCATCCAGGAGTTATATGCTACCTATCCAGATCTA
CAGAGGATGGTCATCCCACTTGGTGGGACACTGATGGGTACAGCAGTTGCATGGTTTGTG
ATGCCTATTGTTCTAAGGAAGCTCCACAAGTACACTTCAGAAAATCCTCTCATAACGCTT
GAAGGGGAGTCAACTAAGAAATACATGTCCTATCAAACAAGCTTGTGGAGTGCATTGGAA
GATCCTGCAAAATGTATTATCACTTTTATGGCATTTTCACAGATGGCTGCAATTGTTGTG
CCAAGTATTTCAGTTTATCTTCCACAGGCATGGAGAGGAACATTTGTTGTATCTCTTCTG
TGGTTTCTTCAGAAGTGGAAAACTAACTTCATTGCTAATATTATGACCAATCAATCTGCT
ATAGGGATGGACAGAGACAGATTGTTAACATTTGATAAGGTGTCATCGTTAGCACTAATT
GCACTTGGAGGAATGGCTCTTGCTGAAGCTTGCGGTGTACCTGTGCAGTCAATATTGACT
GTTGGTGGTGTCGGAGGTGTTGCTACTGCTTTTGCTGCTAGAGATGTCTTAGGTAACATA
CTGAGTGGGCTCTCTCTACAATTTTCAAAGCCATTCTTGGTTGGGGATAACATAAAGGCT
GGGTCAATAGAAGGAAAAGTTATTGAAATTGGACTGACATCCACGTTATTGATTAACCCA
GAAAACCTCCCTGTTGTAGTTCCTAACTCACTGTTCTCCAGCCAAATTATAGTCAATAAA
TCAAGAGCTGTGTGGCGTGCTAGGGTGGTAAAAATTCCTGTTATAATTGAAGACCTTGAA
AAGATTCCTACTATATCAGAGGAGATAAAAGTGAAGTTAAGGTCCAACCCAAACATTGAT
GCTCCTTACTGCTATCTCTCACGGTTAGAAAGTTCACATGGAGAGCTTACCATTGGTTGC
AACATCAAAAGCATGAGAAGAGACGAATGGACAACAGTGGAACAAGATATTCTTTTGAAA
GCTGCCAGCATTGTCAAGCAATACGAATCTTGA

Peptide Sequence

PEP ID

Os02t0681000-01
PEP Infomation

pep chromosome:IRGSP-1.0:2:27798048:27803714:1 gene:Os02g0681000 transcript:Os02t0681000-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Mechanosensitive ion channel MscS domain containing protein. (Os02t0681000-01)
Sequence

MSRTAIILHRFRQAAASQSLVETSLQSCPYFGVPLRWLSCTEQTSKWETSTSYQIDDVDQ
YSPISSVAKICTHPLSSHVNHCYHHSRSLGFSSVSSSRRMYSSDARAKPEDYKNAMAKVS
STETSEVGATDHSGNTWIDILDSARHSTIDATAAALKKLKAMTDPIVPCIQELYATYPDL
QRMVIPLGGTLMGTAVAWFVMPIVLRKLHKYTSENPLITLEGESTKKYMSYQTSLWSALE
DPAKCIITFMAFSQMAAIVVPSISVYLPQAWRGTFVVSLLWFLQKWKTNFIANIMTNQSA
IGMDRDRLLTFDKVSSLALIALGGMALAEACGVPVQSILTVGGVGGVATAFAARDVLGNI
LSGLSLQFSKPFLVGDNIKAGSIEGKVIEIGLTSTLLINPENLPVVVPNSLFSSQIIVNK
SRAVWRARVVKIPVIIEDLEKIPTISEEIKVKLRSNPNIDAPYCYLSRLESSHGELTIGC
NIKSMRRDEWTTVEQDILLKAASIVKQYES

Transcript Sequence

Transcript ID

Os02t0681000-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:27798048:27803714:1 gene:Os02g0681000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Mechanosensitive ion channel MscS domain containing protein. (Os02t0681000-01)
Sequence

AGGAGAACGAGAGAAAACGCACCGTTGGCCGCGTATCAGGGATTCGGGGCATCAAGGTCC
AATAGCTGAATAGCACATCGCCATCACAATGCCAGCGCCTCTCCCAGGTGTCGGAACCGG
AGAGAGGGAGAGATAGAGAGACCTGGAAGGCTGGAAATCGAGAGCAGCGAGGCGGCGAAA
CAAGCAGGCGGCCCGGCTCTCAGTCTCATCCCGTGCCTCCTCCGCCTCCCTAATCGTCAA
CCATCTAGATGTCTCAGTCGGTGCAAGGGTCTTTTTGTTAGTTACTTTGCAAAGTTAAAC
TTGAAAATTTAAAGGATAAAAAAATGTCCAGGACTGCAATAATTTTGCATCGATTTCGTC
AAGCAGCTGCCAGTCAGAGCCTCGTAGAGACTTCTCTTCAGTCATGCCCATATTTTGGTG
TTCCTCTGAGATGGTTAAGCTGCACAGAGCAAACTTCAAAATGGGAAACTTCTACATCTT
ATCAGATTGATGACGTAGATCAATATTCACCAATTAGTAGTGTAGCAAAAATCTGCACAC
ATCCCCTTTCATCTCACGTAAACCACTGTTATCACCACAGTCGTTCACTGGGTTTCTCAA
GTGTCTCAAGTTCTCGTCGCATGTATTCCTCTGATGCTAGAGCCAAGCCAGAAGATTACA
AAAATGCTATGGCCAAAGTTTCTTCTACAGAAACTTCTGAAGTCGGCGCCACAGATCACA
GTGGCAACACTTGGATTGATATTTTAGATAGTGCCCGTCACTCTACCATAGATGCTACTG
CAGCCGCACTTAAGAAACTGAAGGCGATGACTGATCCAATTGTACCTTGCATCCAGGAGT
TATATGCTACCTATCCAGATCTACAGAGGATGGTCATCCCACTTGGTGGGACACTGATGG
GTACAGCAGTTGCATGGTTTGTGATGCCTATTGTTCTAAGGAAGCTCCACAAGTACACTT
CAGAAAATCCTCTCATAACGCTTGAAGGGGAGTCAACTAAGAAATACATGTCCTATCAAA
CAAGCTTGTGGAGTGCATTGGAAGATCCTGCAAAATGTATTATCACTTTTATGGCATTTT
CACAGATGGCTGCAATTGTTGTGCCAAGTATTTCAGTTTATCTTCCACAGGCATGGAGAG
GAACATTTGTTGTATCTCTTCTGTGGTTTCTTCAGAAGTGGAAAACTAACTTCATTGCTA
ATATTATGACCAATCAATCTGCTATAGGGATGGACAGAGACAGATTGTTAACATTTGATA
AGGTGTCATCGTTAGCACTAATTGCACTTGGAGGAATGGCTCTTGCTGAAGCTTGCGGTG
TACCTGTGCAGTCAATATTGACTGTTGGTGGTGTCGGAGGTGTTGCTACTGCTTTTGCTG
CTAGAGATGTCTTAGGTAACATACTGAGTGGGCTCTCTCTACAATTTTCAAAGCCATTCT
TGGTTGGGGATAACATAAAGGCTGGGTCAATAGAAGGAAAAGTTATTGAAATTGGACTGA
CATCCACGTTATTGATTAACCCAGAAAACCTCCCTGTTGTAGTTCCTAACTCACTGTTCT
CCAGCCAAATTATAGTCAATAAATCAAGAGCTGTGTGGCGTGCTAGGGTGGTAAAAATTC
CTGTTATAATTGAAGACCTTGAAAAGATTCCTACTATATCAGAGGAGATAAAAGTGAAGT
TAAGGTCCAACCCAAACATTGATGCTCCTTACTGCTATCTCTCACGGTTAGAAAGTTCAC
ATGGAGAGCTTACCATTGGTTGCAACATCAAAAGCATGAGAAGAGACGAATGGACAACAG
TGGAACAAGATATTCTTTTGAAAGCTGCCAGCATTGTCAAGCAATACGAATCTTGAACTT
GCGAGCACATTACAGTTCTGTTCTATCCCTCTCCATTTTACTGCGAGAAGAGGTTAAAGT
GGTTACTCTTTTTCTAGTTTGGTATGGGTATATGGGACTGTAAATAGAGTTCTCATGTCC
CATACTCTAATGTTTTGATCACATGTGCCATATGCCTTTCCTATTTAAGGAAGTGACCCT
TTGTCATCCTACTGTTACATGGATACAAGAAAAGGAGATGAAAGATGAATCACC