Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os02t0672200-01
CDS Infomation	cds chromosome:IRGSP-1.0:2:27330175:27341732:-1 gene:Os02g0672200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ARGONAUTE 1A description:Similar to AGO1 homologous protein. (Os02t0672200-01);Similar to Protein argonaute 1A. (Os02t0672200-02)
Sequence	ATGGCCTTCCAGTTGGACAACGGGTACTACTCCCATCAAGCTTTAGCCATGATGAGAAAG AAAAAAACTGAACCCCGTAATGCTGGGGAAAGTTCTGGAACTCAACAAGCCACTGGAGCT CCTGGACGGGGTCCTTCACAGCGACCTGAGAGAGCTCAACAGCATGGAGGTGGTGGTTGG CAACCTGCCAATCCTCAATATGCTCAACAAGCTGGTCGTGGTGGTGGACAACACCAGGGA CGTGGTGGACGTTACCAGGGTCGTGGAGGGCCAACATCACATCAACCAGGTGGTGGTCCG GTTGAATATCAAGCACATGAGTACTATGGCCGTGGTGTCCAACGGCAAGGAGGAATGCCA CAACACAGGAGTGGCAGTGGTGGACATGGAGTTCCTGCCAGTCCATCAAGAACAGTTCCC GAGCTGCACCAAGCCTCACAAGACCAGTACCAAGCTACGGTGGTTGCACCATCACCATCA AGAACTGGCCCATCTTCGCTGCCTGTTGAGGCCAGCAGCGAAGAAGTCCAACATCAGTTT CAGGAACTTGCCATCCAGGGTCAAAGCCCCACTAGCCAGGCCATTCAACCAGCACCACCA TCGAGCAAATCAGTGAGATTTCCAATGCGCCCTGGCAAGGGTACATTTGGTGATAGGTGC ATCGTGAAAGCCAACCATTTCTTTGCTGAATTGCCTGACAAAGACCTTCACCAGTATGAT GTGTCTATAACTCCTGAGGTTCCTTCACGTGGTGTCAATCGTGCTGTCATTGGAGAAATT GTAACACAATATAGGCAGTCTCATTTGGGTGGCCGTCTTCCAGTCTATGATGGAAGGAAG AGCTTATACACAGCTGGTCCATTACCATTTACTTCTAGGACCTTTGACGTTATTCTGCAG GATGAGGAAGAGAGCCTTGCTGTTGGGCAAGGTGCACAGAGGCGTGAGAGACCATTTAAG GTCGTGATCAAATTTGCTGCACGCGCTGATCTCCACCATTTAGCCATGTTTTTAGCTGGA AGGCAAGCGGATGCTCCTCAAGAAGCTCTTCAAGTTCTTGACATTGTTCTACGTGAATTG CCTACTGCAAGGTACTCTCCAGTTGCAAGGTCATTTTATTCGCCTAACTTAGGAAGGCGC CAACAACTTGGCGAGGGCCTGGAAAGTTGGCGTGGTTTTTACCAAAGCATACGACCCACG CAGATGGGACTTTCTCTGAATATTGATATGTCATCGACAGCATTCATTGAGCCTCTACCT GTGATTGACTTTGTTGCACAGCTTTTGAACAGAGACATCTCAGTTAGACCATTATCTGAT GCTGATCGTGTGAAGATCAAGAAGGCCCTAAGGGGTGTAAAGGTTGAGGTCACACATAGA GGCAATATGCGCAGGAAGTATCGCATTTCTGGCCTTACCTCGCAAGCAACACGAGAGTTG TCTTTTCCCATTGATAATCATGGTACTGTGAAGACGGTGGTGCAATACTTCCAGGAGACA TATGGATTTAACATTAAGCACACAACTTTGCCTTGCTTGCAAGTGGGCAATCAACAAAGG CCAAATTATCTACCAATGGAGGTCTGTAAGATTGTGGAGGGACAGCGTTACTCAAAAAGA CTAAATGAGAAGCAGATAACTGCTCTTCTTAAAGTGACCTGCCAGCGCCCTCAAGAGCGT GAGCTGGACATTTTGCAGACTGTGCATCACAATGCATACCATCAGGATCCATATGCACAG GAGTTTGGCATAAGGATCGATGAGCGACTTGCATCTGTTGAAGCTCGTGTTCTACCACCC CCCTGGCTTAAGTACCACGATAGTGGCAGAGAGAAGGATGTCTTGCCAAGAATTGGCCAA TGGAATATGATGAATAAGAAAATGGTCAATGGTGGTAGAGTTAACAACTGGACATGCATC AATTTTTCTCGTCATGTCCAAGATAATGCTGCTAGGAGTTTCTGTCGCGAGCTTGCTATT ATGTGCCAAATATCTGGGATGGACTTCTCAATTGATCCTGTGGTTCCTCTAGTGACTGCA AGACCTGAACATGTGGAAAGAGCGCTCAAGGCACGCTATCAAGAGGCCATGAATATACTG AAACCACAGGGCGGGGAGCTTGACCTGCTGATTGCAATATTGCCTGACAATAATGGTTCT CTTTATGGCGATCTCAAAAGGATATGTGAGACTGATCTTGGATTGGTCTCGCAATGCTGT CTTACGAAGCATGTTTTTAAGATGAGCAAACAGTATTTAGCAAACGTTGCCCTTAAAATC AATGTTAAGGTGGGAGGAAGAAATACAGTACTTGTTGATGCTTTGACAAGGAGGATTCCC CTTGTGAGTGATAGGCCAACGATCATTTTTGGTGCTGATGTTACACATCCCCATCCTGGA GAAGATTCTAGCCCTTCCATTGCAGCTGTTGTTGCTTCTCAAGACTGGCCTGAGGTCACC AAATATGCCGGATTAGTGAGTGCACAGGCCCATCGTCAGGAATTGATACAGGATCTTTTT AAAGTATGGAAAGATCCTCAAAGAGGAACTGTAAGTGGTGGAATGATCAGAGAGCTTCTC ATTTCTTTCAAGAGGGCAACTGGACAGAAACCCCAGAGGATTATATTTTACAGGGATGGT GTCAGTGAAGGACAGTTTTATCAGGTTCTGTTTTATGAGCTTGATGCCATTAGAAAGGCA TGTGCATCTTTGGAAGCCGATTATCAGCCACCCGTTACCTTTGTGGTGGTCCAGAAGCGT CATCACACAAGGCTGTTTGCTAATAACCACAAGGACCAGCGCACTGTTGACAGAAGTGGA AATATACTACCAGGCACCGTGGTTGATTCAAAGATATGCCATCCTACTGAGTTTGATTTC TACCTGTGTAGCCATGCGGGCATTCAGGGAACAAGTCGCCCTGCACATTATCATGTTCTG TGGGATGAGAACAAGTTCACTGCTGATGGTTTGCAAACTCTGACAAACAACTTGTGCTAC ACCTATGCAAGGTGCACCCGTTCCGTATCAATCGTTCCTCCTGCATATTATGCCCATCTC GCGGCATTTCGAGCTCGATTTTACATGGAGCCGGATACTTCAGATAGTGGGTCGATGGCG AGCGGTGCCCATACCCGTGGCGGTGGCCCCCTTCCTGGTGCACGCAGCACTAAGCCTGCT GGGAATGTTGCTGTAAGGCCGCTTCCTGATCTGAAGGAAAATGTCAAACGTGTCATGTTC TACTGCTAA

Peptide Sequence

PEP ID	Os02t0672200-01
PEP Infomation	pep chromosome:IRGSP-1.0:2:27330175:27341732:-1 gene:Os02g0672200 transcript:Os02t0672200-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ARGONAUTE 1A description:Similar to AGO1 homologous protein. (Os02t0672200-01);Similar to Protein argonaute 1A. (Os02t0672200-02)
Sequence	MAFQLDNGYYSHQALAMMRKKKTEPRNAGESSGTQQATGAPGRGPSQRPERAQQHGGGGW QPANPQYAQQAGRGGGQHQGRGGRYQGRGGPTSHQPGGGPVEYQAHEYYGRGVQRQGGMP QHRSGSGGHGVPASPSRTVPELHQASQDQYQATVVAPSPSRTGPSSLPVEASSEEVQHQF QELAIQGQSPTSQAIQPAPPSSKSVRFPMRPGKGTFGDRCIVKANHFFAELPDKDLHQYD VSITPEVPSRGVNRAVIGEIVTQYRQSHLGGRLPVYDGRKSLYTAGPLPFTSRTFDVILQ DEEESLAVGQGAQRRERPFKVVIKFAARADLHHLAMFLAGRQADAPQEALQVLDIVLREL PTARYSPVARSFYSPNLGRRQQLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLP VIDFVAQLLNRDISVRPLSDADRVKIKKALRGVKVEVTHRGNMRRKYRISGLTSQATREL SFPIDNHGTVKTVVQYFQETYGFNIKHTTLPCLQVGNQQRPNYLPMEVCKIVEGQRYSKR LNEKQITALLKVTCQRPQERELDILQTVHHNAYHQDPYAQEFGIRIDERLASVEARVLPP PWLKYHDSGREKDVLPRIGQWNMMNKKMVNGGRVNNWTCINFSRHVQDNAARSFCRELAI MCQISGMDFSIDPVVPLVTARPEHVERALKARYQEAMNILKPQGGELDLLIAILPDNNGS LYGDLKRICETDLGLVSQCCLTKHVFKMSKQYLANVALKINVKVGGRNTVLVDALTRRIP LVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVSAQAHRQELIQDLF KVWKDPQRGTVSGGMIRELLISFKRATGQKPQRIIFYRDGVSEGQFYQVLFYELDAIRKA CASLEADYQPPVTFVVVQKRHHTRLFANNHKDQRTVDRSGNILPGTVVDSKICHPTEFDF YLCSHAGIQGTSRPAHYHVLWDENKFTADGLQTLTNNLCYTYARCTRSVSIVPPAYYAHL AAFRARFYMEPDTSDSGSMASGAHTRGGGPLPGARSTKPAGNVAVRPLPDLKENVKRVMF YC

Transcript Sequence

Transcript ID	Os02t0672200-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:2:27330175:27341732:-1 gene:Os02g0672200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ARGONAUTE 1A description:Similar to AGO1 homologous protein. (Os02t0672200-01);Similar to Protein argonaute 1A. (Os02t0672200-02)
Sequence	AATTATTTCTTTGTTCTCCTCCTCCTGATTCGTCGTCCGTCCCTAGGAAGCAAAAGGAGA AAGTTTCCACTCTGTCTGCGGGATATATCATATATATCTCAATCGATCCGCCATTGGCGA TCGACGAAGTGATCAGGGGCTAGCTCCTTTGCGCTGCGGCTTTGACCGCGGTGTCGAAGC TTCTTGCACATGGCCTTCCAGTTGGACAACGGGTACTACTCCCATCAAGCTTTAGCCATG ATGAGAAAGAAAAAAACTGAACCCCGTAATGCTGGGGAAAGTTCTGGAACTCAACAAGCC ACTGGAGCTCCTGGACGGGGTCCTTCACAGCGACCTGAGAGAGCTCAACAGCATGGAGGT GGTGGTTGGCAACCTGCCAATCCTCAATATGCTCAACAAGCTGGTCGTGGTGGTGGACAA CACCAGGGACGTGGTGGACGTTACCAGGGTCGTGGAGGGCCAACATCACATCAACCAGGT GGTGGTCCGGTTGAATATCAAGCACATGAGTACTATGGCCGTGGTGTCCAACGGCAAGGA GGAATGCCACAACACAGGAGTGGCAGTGGTGGACATGGAGTTCCTGCCAGTCCATCAAGA ACAGTTCCCGAGCTGCACCAAGCCTCACAAGACCAGTACCAAGCTACGGTGGTTGCACCA TCACCATCAAGAACTGGCCCATCTTCGCTGCCTGTTGAGGCCAGCAGCGAAGAAGTCCAA CATCAGTTTCAGGAACTTGCCATCCAGGGTCAAAGCCCCACTAGCCAGGCCATTCAACCA GCACCACCATCGAGCAAATCAGTGAGATTTCCAATGCGCCCTGGCAAGGGTACATTTGGT GATAGGTGCATCGTGAAAGCCAACCATTTCTTTGCTGAATTGCCTGACAAAGACCTTCAC CAGTATGATGTGTCTATAACTCCTGAGGTTCCTTCACGTGGTGTCAATCGTGCTGTCATT GGAGAAATTGTAACACAATATAGGCAGTCTCATTTGGGTGGCCGTCTTCCAGTCTATGAT GGAAGGAAGAGCTTATACACAGCTGGTCCATTACCATTTACTTCTAGGACCTTTGACGTT ATTCTGCAGGATGAGGAAGAGAGCCTTGCTGTTGGGCAAGGTGCACAGAGGCGTGAGAGA CCATTTAAGGTCGTGATCAAATTTGCTGCACGCGCTGATCTCCACCATTTAGCCATGTTT TTAGCTGGAAGGCAAGCGGATGCTCCTCAAGAAGCTCTTCAAGTTCTTGACATTGTTCTA CGTGAATTGCCTACTGCAAGGTACTCTCCAGTTGCAAGGTCATTTTATTCGCCTAACTTA GGAAGGCGCCAACAACTTGGCGAGGGCCTGGAAAGTTGGCGTGGTTTTTACCAAAGCATA CGACCCACGCAGATGGGACTTTCTCTGAATATTGATATGTCATCGACAGCATTCATTGAG CCTCTACCTGTGATTGACTTTGTTGCACAGCTTTTGAACAGAGACATCTCAGTTAGACCA TTATCTGATGCTGATCGTGTGAAGATCAAGAAGGCCCTAAGGGGTGTAAAGGTTGAGGTC ACACATAGAGGCAATATGCGCAGGAAGTATCGCATTTCTGGCCTTACCTCGCAAGCAACA CGAGAGTTGTCTTTTCCCATTGATAATCATGGTACTGTGAAGACGGTGGTGCAATACTTC CAGGAGACATATGGATTTAACATTAAGCACACAACTTTGCCTTGCTTGCAAGTGGGCAAT CAACAAAGGCCAAATTATCTACCAATGGAGGTCTGTAAGATTGTGGAGGGACAGCGTTAC TCAAAAAGACTAAATGAGAAGCAGATAACTGCTCTTCTTAAAGTGACCTGCCAGCGCCCT CAAGAGCGTGAGCTGGACATTTTGCAGACTGTGCATCACAATGCATACCATCAGGATCCA TATGCACAGGAGTTTGGCATAAGGATCGATGAGCGACTTGCATCTGTTGAAGCTCGTGTT CTACCACCCCCCTGGCTTAAGTACCACGATAGTGGCAGAGAGAAGGATGTCTTGCCAAGA ATTGGCCAATGGAATATGATGAATAAGAAAATGGTCAATGGTGGTAGAGTTAACAACTGG ACATGCATCAATTTTTCTCGTCATGTCCAAGATAATGCTGCTAGGAGTTTCTGTCGCGAG CTTGCTATTATGTGCCAAATATCTGGGATGGACTTCTCAATTGATCCTGTGGTTCCTCTA GTGACTGCAAGACCTGAACATGTGGAAAGAGCGCTCAAGGCACGCTATCAAGAGGCCATG AATATACTGAAACCACAGGGCGGGGAGCTTGACCTGCTGATTGCAATATTGCCTGACAAT AATGGTTCTCTTTATGGCGATCTCAAAAGGATATGTGAGACTGATCTTGGATTGGTCTCG CAATGCTGTCTTACGAAGCATGTTTTTAAGATGAGCAAACAGTATTTAGCAAACGTTGCC CTTAAAATCAATGTTAAGGTGGGAGGAAGAAATACAGTACTTGTTGATGCTTTGACAAGG AGGATTCCCCTTGTGAGTGATAGGCCAACGATCATTTTTGGTGCTGATGTTACACATCCC CATCCTGGAGAAGATTCTAGCCCTTCCATTGCAGCTGTTGTTGCTTCTCAAGACTGGCCT GAGGTCACCAAATATGCCGGATTAGTGAGTGCACAGGCCCATCGTCAGGAATTGATACAG GATCTTTTTAAAGTATGGAAAGATCCTCAAAGAGGAACTGTAAGTGGTGGAATGATCAGA GAGCTTCTCATTTCTTTCAAGAGGGCAACTGGACAGAAACCCCAGAGGATTATATTTTAC AGGGATGGTGTCAGTGAAGGACAGTTTTATCAGGTTCTGTTTTATGAGCTTGATGCCATT AGAAAGGCATGTGCATCTTTGGAAGCCGATTATCAGCCACCCGTTACCTTTGTGGTGGTC CAGAAGCGTCATCACACAAGGCTGTTTGCTAATAACCACAAGGACCAGCGCACTGTTGAC AGAAGTGGAAATATACTACCAGGCACCGTGGTTGATTCAAAGATATGCCATCCTACTGAG TTTGATTTCTACCTGTGTAGCCATGCGGGCATTCAGGGAACAAGTCGCCCTGCACATTAT CATGTTCTGTGGGATGAGAACAAGTTCACTGCTGATGGTTTGCAAACTCTGACAAACAAC TTGTGCTACACCTATGCAAGGTGCACCCGTTCCGTATCAATCGTTCCTCCTGCATATTAT GCCCATCTCGCGGCATTTCGAGCTCGATTTTACATGGAGCCGGATACTTCAGATAGTGGG TCGATGGCGAGCGGTGCCCATACCCGTGGCGGTGGCCCCCTTCCTGGTGCACGCAGCACT AAGCCTGCTGGGAATGTTGCTGTAAGGCCGCTTCCTGATCTGAAGGAAAATGTCAAACGT GTCATGTTCTACTGCTAAGTTTGGGAATATTTGTGTATGGGGGAAAACGTCTGACGGTTT GAGTCGCCCCCTGTTATCTAAGACGGAACGACCTATAGTGTGTGTACGTTAATGATTGTG GTGCTGTGAACTATCGACCATGATCTGGTTGTTTATCTATTATCAACACTAGAAGTTGAG GATTCTAGACTCTTTCAGTGTGGCTACTCAAATCATATCGTCGAAGAAATGTAATAATTG ACAATTACATTGCTGCCATGTTTCCAGGACAAGCTGATCTCAGCTACTGCGGTTCCTTTC CACTTGTTGGATGCGCACCTTGATTCGC