Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os02t0672100-01
CDS Infomation	cds chromosome:IRGSP-1.0:2:27316157:27325651:1 gene:Os02g0672100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:INDETERMINATE DOMAIN 4, Suppressor of rid1, indeterminate domain 4 description:C2H2-type zinc finger transcription factor, Promotion of flowering (Os02t0672100-01)
Sequence	ATGGCATCCAACTCATCAGCGGCAGCTGTGGCGGCGTTGTTTGGAATTAGGGATGGCGAC CATGAGGACCAGATTAAGCCGCTATTTGCCCAGCAGCAGCAACACCACCACCACCAGCCA CCTATGGCGCCATCCAACGCCGCGGCGGCGGCTTCTGCGGCAGGGTCGGCGGCCGGTCAA GCGGCCGTGGCGGCGCCACCAGCGAAGAAGAAGAGAACCTTACCAGACCCGGACGCGGAG GTGATAGCGCTGTCGCCGAAGACGCTGCTGGCGACGAACCGGTTCGTGTGCGAGGTGTGC AACAAGGGGTTCCAGCGGGAGCAGAACCTGCAGCTGCACCGGCGCGGGCACAACCTGCCG TGGAAGCTGAAGCAGAAGAACCCGCTGCAGGCGCAGCGCCGCCGGGTGTACCTGTGCCCG GAGCCGACGTGCGTCCACCACGACCCCTCCCGCGCCCTCGGCGACCTCACCGGCATCAAG AAGCACTTCTGCCGCAAGCACGGCGAGAAGAAGTGGAAGTGCGACAAGTGCTCCAAGCGC TACGCCGTCCAGTCCGACTGGAAGGCCCACTCCAAGATCTGCGGCACCCGCGAGTACCGC TGCGACTGCGGCACCCTCTTCTCCCGGAGGGACAGCTTCATCACCCACCGCGCCTTCTGC GACGCCCTCGCCCAGGAGAGCGCGCGGCTGCCACCCGCCGCCGCCGGCCACCTCTACGGC TCCGCCGGCGCCGCCAACATGGCGCTCAGCCTCTCCCAGGTCGGCTCCCACCTCGCCTCC ACCCTCCAGGACCACGGCCACCACCACCACCATCACGGCGCCTCCCCGGACCTCCTCCGC TTCGGCGGCAGCGGCGGTGGCGCCATGGCTGCACGCCTCGAGCACCTCCTGTCGTCGTCC AGCGCCTCCGCGTTCCGGCCCCTGCCGCCGCCGCAGCAGCAGCCTCCGGCGCCGTTCCTC CTCGGCGCGGCGCCGCAGGGGTTCGGCGACGGCGGCGACGGCAGTGGTCCGCACGGATTC TTGCAGGGTAAGCCGTTCCATGGCCTCATGCAGCTCCCTGACCTCCAAGGGAATGGCACC GGCGGGCCGTCGCCGTCGGGTCCGGGTCTCTACAACCTCGGCTACATCGCCAACAGCGCG AACAGCTCGGGTACTTCCAGCCATGGCCACGCGAGCCAGGGACAGATGACGAACACCGAC CAGTTCAGCGAAGGAGGGGGTGGTGGCGGCGGCGGCGGCGGTTCAGAGACATCGGCGGCG GCGCTGTTCGGCGCCGGTGGGAACTTCTCCGGCGGCGACCACCACCAGGTTTCTCCTGCC GGGATGTACGCGAATGATCAGGCCATGATGCTGCCGCAGATGTCGGCGACCGCGCTGCTC CAGAAGGCGGCGCAGATGGGCTCGAGCACGTCGAGCGCGAACGGCGCCGGCGCGTCCGTG TTCGGCGGCGGCTTCGCCGGCTCGTCGGCGCCGTCGTCCATCCCGCACGGCCGCGGGACG ACCATGGTCGACCAGGGGCAGATGCACCTCCAGAGCCTGATGAACTCGCTCGCCGGCGGT GGCAACGCCGACCACCAGGGCATGTTTGGGAGTGGCAGCATGATTGACCCGAGGCTGTAC GACATGGACCAGCACGAGGTGAAGTTCAGCCTGCAGCGCGGCGGCGGCGGCGGCGGCGAC GGCGACGTGACGCGTGACTTCCTCGGCGTCGGCGGCGGCGGTTTCATGAGGGGGATGTCG ATGGCGAGAGGGGAGCACCATGGCGGTGGCGGCAGCGACATGCATGGCACCTTGGAGGCC GAGATGAAGTCGGCGTCGTCGTCCTTCAACGGAGGCAGGATGCAATGA

Peptide Sequence

PEP ID	Os02t0672100-01
PEP Infomation	pep chromosome:IRGSP-1.0:2:27316157:27325651:1 gene:Os02g0672100 transcript:Os02t0672100-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:INDETERMINATE DOMAIN 4, Suppressor of rid1, indeterminate domain 4 description:C2H2-type zinc finger transcription factor, Promotion of flowering (Os02t0672100-01)
Sequence	MASNSSAAAVAALFGIRDGDHEDQIKPLFAQQQQHHHHQPPMAPSNAAAAASAAGSAAGQ AAVAAPPAKKKRTLPDPDAEVIALSPKTLLATNRFVCEVCNKGFQREQNLQLHRRGHNLP WKLKQKNPLQAQRRRVYLCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKR YAVQSDWKAHSKICGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARLPPAAAGHLYG SAGAANMALSLSQVGSHLASTLQDHGHHHHHHGASPDLLRFGGSGGGAMAARLEHLLSSS SASAFRPLPPPQQQPPAPFLLGAAPQGFGDGGDGSGPHGFLQGKPFHGLMQLPDLQGNGT GGPSPSGPGLYNLGYIANSANSSGTSSHGHASQGQMTNTDQFSEGGGGGGGGGGSETSAA ALFGAGGNFSGGDHHQVSPAGMYANDQAMMLPQMSATALLQKAAQMGSSTSSANGAGASV FGGGFAGSSAPSSIPHGRGTTMVDQGQMHLQSLMNSLAGGGNADHQGMFGSGSMIDPRLY DMDQHEVKFSLQRGGGGGGDGDVTRDFLGVGGGGFMRGMSMARGEHHGGGGSDMHGTLEA EMKSASSSFNGGRMQ

Transcript Sequence

Transcript ID	Os02t0672100-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:2:27316157:27325651:1 gene:Os02g0672100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:INDETERMINATE DOMAIN 4, Suppressor of rid1, indeterminate domain 4 description:C2H2-type zinc finger transcription factor, Promotion of flowering (Os02t0672100-01)
Sequence	CAGGACTAGCAGGCAAGAGCAAGCAGCTGGAAGAGTATTAGCAGCATGCAGCTCTAGAGA CGACAGGCACAGAGGAGGGGAGAGCTTCTTGCAGTGACGGGAAATCAAGAAAAGAAAGCT GCTACTAGCCCAAGCCAAAGCTCTACAAGAAGGGAAAAGATTCCCTTCTGTTCTTGAGTA GCTAGCTTCGCTCGAGGGTAATTAAATCTGAGAGCGGCCATGGCATCCAACTCATCAGCG GCAGCTGTGGCGGCGTTGTTTGGAATTAGGGATGGCGACCATGAGGACCAGATTAAGCCG CTATTTGCCCAGCAGCAGCAACACCACCACCACCAGCCACCTATGGCGCCATCCAACGCC GCGGCGGCGGCTTCTGCGGCAGGGTCGGCGGCCGGTCAAGCGGCCGTGGCGGCGCCACCA GCGAAGAAGAAGAGAACCTTACCAGACCCGGACGCGGAGGTGATAGCGCTGTCGCCGAAG ACGCTGCTGGCGACGAACCGGTTCGTGTGCGAGGTGTGCAACAAGGGGTTCCAGCGGGAG CAGAACCTGCAGCTGCACCGGCGCGGGCACAACCTGCCGTGGAAGCTGAAGCAGAAGAAC CCGCTGCAGGCGCAGCGCCGCCGGGTGTACCTGTGCCCGGAGCCGACGTGCGTCCACCAC GACCCCTCCCGCGCCCTCGGCGACCTCACCGGCATCAAGAAGCACTTCTGCCGCAAGCAC GGCGAGAAGAAGTGGAAGTGCGACAAGTGCTCCAAGCGCTACGCCGTCCAGTCCGACTGG AAGGCCCACTCCAAGATCTGCGGCACCCGCGAGTACCGCTGCGACTGCGGCACCCTCTTC TCCCGGAGGGACAGCTTCATCACCCACCGCGCCTTCTGCGACGCCCTCGCCCAGGAGAGC GCGCGGCTGCCACCCGCCGCCGCCGGCCACCTCTACGGCTCCGCCGGCGCCGCCAACATG GCGCTCAGCCTCTCCCAGGTCGGCTCCCACCTCGCCTCCACCCTCCAGGACCACGGCCAC CACCACCACCATCACGGCGCCTCCCCGGACCTCCTCCGCTTCGGCGGCAGCGGCGGTGGC GCCATGGCTGCACGCCTCGAGCACCTCCTGTCGTCGTCCAGCGCCTCCGCGTTCCGGCCC CTGCCGCCGCCGCAGCAGCAGCCTCCGGCGCCGTTCCTCCTCGGCGCGGCGCCGCAGGGG TTCGGCGACGGCGGCGACGGCAGTGGTCCGCACGGATTCTTGCAGGGTAAGCCGTTCCAT GGCCTCATGCAGCTCCCTGACCTCCAAGGGAATGGCACCGGCGGGCCGTCGCCGTCGGGT CCGGGTCTCTACAACCTCGGCTACATCGCCAACAGCGCGAACAGCTCGGGTACTTCCAGC CATGGCCACGCGAGCCAGGGACAGATGACGAACACCGACCAGTTCAGCGAAGGAGGGGGT GGTGGCGGCGGCGGCGGCGGTTCAGAGACATCGGCGGCGGCGCTGTTCGGCGCCGGTGGG AACTTCTCCGGCGGCGACCACCACCAGGTTTCTCCTGCCGGGATGTACGCGAATGATCAG GCCATGATGCTGCCGCAGATGTCGGCGACCGCGCTGCTCCAGAAGGCGGCGCAGATGGGC TCGAGCACGTCGAGCGCGAACGGCGCCGGCGCGTCCGTGTTCGGCGGCGGCTTCGCCGGC TCGTCGGCGCCGTCGTCCATCCCGCACGGCCGCGGGACGACCATGGTCGACCAGGGGCAG ATGCACCTCCAGAGCCTGATGAACTCGCTCGCCGGCGGTGGCAACGCCGACCACCAGGGC ATGTTTGGGAGTGGCAGCATGATTGACCCGAGGCTGTACGACATGGACCAGCACGAGGTG AAGTTCAGCCTGCAGCGCGGCGGCGGCGGCGGCGGCGACGGCGACGTGACGCGTGACTTC CTCGGCGTCGGCGGCGGCGGTTTCATGAGGGGGATGTCGATGGCGAGAGGGGAGCACCAT GGCGGTGGCGGCAGCGACATGCATGGCACCTTGGAGGCCGAGATGAAGTCGGCGTCGTCG TCCTTCAACGGAGGCAGGATGCAATGATCTCTTAAGCATATATACGTGGCACGTTGGCAT CAACATGCATGGCAGGAATAAGTTGTTGATTTGCAGGTTGCAATACAATGCTGTGACTTG TGACACATGTGATAGATGTTTTTGCATGCATCCATGCAAAAGGATAAAGCCAGCTTTGAT GATGATACAATCTTAGCGAGAGACATGGTGAGCAGAAGAGCTTCTCCTAGACTCCTACTA ATGCATGATGAAGCTAGATCAACAGGAATCATGAGACTTGAGCTGAAGTTAGGCGTTATT ACTGCAATATACTATTCTGTTCCTGATAGATCTTATTGCTAAATTTCATTTGAAAGAATA GGTCTTGCTAAATGTAATTGGGTTAATTGTACTGGATCAGGGATAACTGCAATGAGACTG TATTATCTTCTTCTTTCTTTTCTGTCAGACGAATTATAGGTCTGTGGGGGATAATGAGAC TTAATTACCCTACTGATCTTTTCTATTTTTTGTCCTCTTTCAGTCATTCAGTTAACCCTC TAGAGCAAAAATATTGTTCTTGCAATTAATGCAGTTAATCATGATATATAGTCC