Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0670400-01
CDS Infomation

cds chromosome:IRGSP-1.0:2:27225269:27226956:1 gene:Os02g0670400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to HMGc1 protein. (Os02t0670400-01)
Sequence

ATGAAGGGCAAGGCCGACGCCTCCAAGAAGGGCGAGGGCAGGCTCAAGGCCGCCGGCGGC
GCCGGGAAGCGGAAGAAGGCCGCCGCTAGCGGCAAGCCGAAGCGCCCGCCGTCTGCTTTC
TTCGTCTTCATGTCTGAGTTCAGGCAGGAGTACCAGGCAGCGCATCCTGACAACAAGAGT
GTCGCCGCCGTGAGCAAGGCTGCAGGGGAGAAGTGGCGAGCTATGTCTGAGCAAGAGAAG
GCACCTTATGTGGACAAGGCTGGCCAAAAGAAGCAGGACTACGAGAAGACCAAGGCCAAC
TTCGATAAGAAGGAGAGCACAAGCTCAAAGAAAGCTAAGACCCATGATGATGGAGAAGGC
TCTGACAAGTCCAAGTCTGAGGTCGACGATGACCAGGATGGTGGTAGCGATGAGGAAAAT
GAGGACGATGAAGAGTAA

Peptide Sequence

PEP ID

Os02t0670400-01
PEP Infomation

pep chromosome:IRGSP-1.0:2:27225269:27226956:1 gene:Os02g0670400 transcript:Os02t0670400-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to HMGc1 protein. (Os02t0670400-01)
Sequence

MKGKADASKKGEGRLKAAGGAGKRKKAAASGKPKRPPSAFFVFMSEFRQEYQAAHPDNKS
VAAVSKAAGEKWRAMSEQEKAPYVDKAGQKKQDYEKTKANFDKKESTSSKKAKTHDDGEG
SDKSKSEVDDDQDGGSDEENEDDEE

Transcript Sequence

Transcript ID

Os02t0670400-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:27225269:27226956:1 gene:Os02g0670400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to HMGc1 protein. (Os02t0670400-01)
Sequence

ACGCACCGCGCAACGCTCCGCCCCAAAAGGCCAGACAACGCCCGTTGCGCCGCCTCCCAA
ACTCCGCCTCCTCCTCCTCCGCTGCACCCCCGCAAAAACCCTAGCGCACCGACTTCGCGA
TCTCCGCGCCGCAGCCATGAAGGGCAAGGCCGACGCCTCCAAGAAGGGCGAGGGCAGGCT
CAAGGCCGCCGGCGGCGCCGGGAAGCGGAAGAAGGCCGCCGCTAGCGGCAAGCCGAAGCG
CCCGCCGTCTGCTTTCTTCGTCTTCATGTCTGAGTTCAGGCAGGAGTACCAGGCAGCGCA
TCCTGACAACAAGAGTGTCGCCGCCGTGAGCAAGGCTGCAGGGGAGAAGTGGCGAGCTAT
GTCTGAGCAAGAGAAGGCACCTTATGTGGACAAGGCTGGCCAAAAGAAGCAGGACTACGA
GAAGACCAAGGCCAACTTCGATAAGAAGGAGAGCACAAGCTCAAAGAAAGCTAAGACCCA
TGATGATGGAGAAGGCTCTGACAAGTCCAAGTCTGAGGTCGACGATGACCAGGATGGTGG
TAGCGATGAGGAAAATGAGGACGATGAAGAGTAAATAGTGTATCCGGGGGCATGAGGTAG
CAAACTGTGTCTTAGGTCCCCTATTAGCTTTACTAGTTTGCTATCTTCGACCCTAAGATG
TTGGGAATAGGCGTGCGTGGGTGTGAAGGGGGACCGTTTAGAATTATGGTACTCAGAATG
TTTTCCTACAGTGGATTAGCAAAGAAAAAGCCTGAATGCCGCCTGCTGTTCTGTTGCTTT
TCTTTTGCTAACCACTTGTCACAGAACTTTGTTTCATTTGCTAATCTAGTAGCAATTCAG
TTAGCTTTCT