Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0666200-02
CDS Infomation

cds chromosome:IRGSP-1.0:2:27044395:27047367:1 gene:Os02g0666200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PLASMA MEMBRANE INTRINSIC PROTEIN 1A description:Aquaporin. (Os02t0666200-01);Aquaporin. (Os02t0666200-02)
Sequence

ATGGAGGGGAAGGAGGAGGACGTGCGGCTGGGGGCGAACAGGTACTCGGAGAGGCAGCCG
ATAGGGACGGCGGCGCAGGGCGCCGGGGACGACAAGGACTACAAGGAGCCGCCGCCGGCG
CCGCTGTTCGAGCCAGGGGAGCTCAAGTCGTGGTCTTTCTACCGGGCCGGGATCGCCGAG
TTCGTCGCCACCTTCCTCTTCCTCTACATCACCATCCTCACCGTCATGGGGGTCTCCAAG
TCCTCCTCCAAGTGCGCCACCGTCGGCATCCAGGGCATCGCCTGGTCCTTCGGAGGCATG
ATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGGAGGACACATCAACCCAGCAGTT
ACTTTTGGGCTGTTCTTGGCCAGGAAGCTGTCCCTGACCCGGGCCATCTTCTACATAGTG
ATGCAATGCCTAGGGGCCATCTGCGGAGCTGGAGTTGTGAAGGGCTTCCAGCAGGGTCTG
TACATGGGCAATGGCGGTGGTGCCAATGTAGTTGCCAGTGGCTACACCAAGGGTGACGGT
CTTGGTGCTGAGATTGTTGGCACCTTCATCCTGGTCTACACCGTCTTCTCAGCCACTGAT
GCCAAGAGGAATGCCAGGGACTCACATGTTCCTATCCTTGCCCCACTGCCAATTGGTTTT
GCGGTGTTCCTGGTCCACCTGGCCACCATCCCCATCACCGGTACTGGCATCAACCCAGCC
AGGAGCCTTGGCGCTGCCATCATCTACAACAAGGACCATGCCTGGAATGACCATTGGATC
TTCTGGGTTGGTCCCTTCGTTGGCGCTGCCCTGGCTGCCATCTACCACCAGGTGATCATC
AGGGCGATCCCATTCAAGAGCAGGTCTTAA

Peptide Sequence

PEP ID

Os02t0666200-02
PEP Infomation

pep chromosome:IRGSP-1.0:2:27044395:27047367:1 gene:Os02g0666200 transcript:Os02t0666200-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PLASMA MEMBRANE INTRINSIC PROTEIN 1A description:Aquaporin. (Os02t0666200-01);Aquaporin. (Os02t0666200-02)
Sequence

MEGKEEDVRLGANRYSERQPIGTAAQGAGDDKDYKEPPPAPLFEPGELKSWSFYRAGIAE
FVATFLFLYITILTVMGVSKSSSKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAV
TFGLFLARKLSLTRAIFYIVMQCLGAICGAGVVKGFQQGLYMGNGGGANVVASGYTKGDG
LGAEIVGTFILVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPA
RSLGAAIIYNKDHAWNDHWIFWVGPFVGAALAAIYHQVIIRAIPFKSRS

Transcript Sequence

Transcript ID

Os02t0666200-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:27044395:27047367:1 gene:Os02g0666200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PLASMA MEMBRANE INTRINSIC PROTEIN 1A description:Aquaporin. (Os02t0666200-01);Aquaporin. (Os02t0666200-02)
Sequence

ACCATCTAGCTCACTCACACAGTCTCCACTCACACGCATTGCAGAGGAGAGGCGACAATG
GAGGGGAAGGAGGAGGACGTGCGGCTGGGGGCGAACAGGTACTCGGAGAGGCAGCCGATA
GGGACGGCGGCGCAGGGCGCCGGGGACGACAAGGACTACAAGGAGCCGCCGCCGGCGCCG
CTGTTCGAGCCAGGGGAGCTCAAGTCGTGGTCTTTCTACCGGGCCGGGATCGCCGAGTTC
GTCGCCACCTTCCTCTTCCTCTACATCACCATCCTCACCGTCATGGGGGTCTCCAAGTCC
TCCTCCAAGTGCGCCACCGTCGGCATCCAGGGCATCGCCTGGTCCTTCGGAGGCATGATC
TTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGGAGGACACATCAACCCAGCAGTTACT
TTTGGGCTGTTCTTGGCCAGGAAGCTGTCCCTGACCCGGGCCATCTTCTACATAGTGATG
CAATGCCTAGGGGCCATCTGCGGAGCTGGAGTTGTGAAGGGCTTCCAGCAGGGTCTGTAC
ATGGGCAATGGCGGTGGTGCCAATGTAGTTGCCAGTGGCTACACCAAGGGTGACGGTCTT
GGTGCTGAGATTGTTGGCACCTTCATCCTGGTCTACACCGTCTTCTCAGCCACTGATGCC
AAGAGGAATGCCAGGGACTCACATGTTCCTATCCTTGCCCCACTGCCAATTGGTTTTGCG
GTGTTCCTGGTCCACCTGGCCACCATCCCCATCACCGGTACTGGCATCAACCCAGCCAGG
AGCCTTGGCGCTGCCATCATCTACAACAAGGACCATGCCTGGAATGACCATTGGATCTTC
TGGGTTGGTCCCTTCGTTGGCGCTGCCCTGGCTGCCATCTACCACCAGGTGATCATCAGG
GCGATCCCATTCAAGAGCAGGTCTTAAGCCCCGCGCCGCCGCTGCGCAGCCGACGACATG
CAACGCAATCGTGATGTCCTGTTTCCCGCGCGCTACTGCTGCGCATCTGTCGATTCCCTC
TATCTCTAGTCCCCAAGATGTTTTTCCTATCTGAACCCTGAACAACTCAATCGTGTAATC
CAGTACTCAGTCACTGTATGTTTTTATGTGATGGAGATCTTAATTCTTAAGTTATC