Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0659100-01
CDS Infomation

cds chromosome:IRGSP-1.0:2:26668796:26671144:1 gene:Os02g0659100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, C2H2-type domain containing protein. (Os02t0659100-01)
Sequence

ATGGCGATGGTCGTCGCGGGGAGCCATCGGCCGCCGCCGCCGCCGCAGTCGCTGCGGCTG
GTCCCGCCACCGCCGCCGCAGCCTCCTCCTCCTCCTCTGACGTACAGGCACCACTGCAAG
GTGTGCAAGAAGGGGTTCATGTGCGGTCGCGCGCTCGGCGGCCACATGAGGGCGCACGGC
ATCGGCGACGACAACGACACGATGGACGACGACGACGGCCGCGATGATGATCATTCGCTG
TCACCGTGCGATGGTGGTGGCGAGCCGTCGGAGGCAGCCGGGAGCCCGACGACGACGACG
ACGAAACGTATGTACGCGCTGCGGACCAATCCCGGGCGGCCAAGGAACTGCAGGACATGC
GAGAACTGCGGGAAGGAGTTCACGTCGTGGAAGACGTTGCTGGATCATGGCAGGTGCGGC
CTTGACGAGGAGGACGGTCGCCTCGACGTCTCGCTCCGTTCGCCGCCGCTTCACGACGGT
GGCGACGAAAACGACGGCGAGGAGGAGGAGGAGGGGGACGACCTCACACTGGCTGCGGGC
GGGTGGTCGAAAGGGAAGCGCTCGCGCCGTGCTAAAGTGATGGCCGTCGGGACCGGCTCC
GTGTCCGAGCTACAGCTGCCGGCTCCGTCTACCGAAGAGGAAGACCTCGCCAACTTTCTC
GTGATGCTCTCTTCTTCTTCGTCATCATCGTCGCGTGTTGCACAGCCAGCCATCGTCGTC
GACGACGCGGACCAAGAGTCCTGCGCATCAGGTAGCAAGGACGAGGAGAGGAACAGGTTC
TTGGTGCCGCAGCCAATCTCGATGGCAGCCCCCATGATGGCTCAGATGACAGTGATCGCT
CCGCAAGTGGTGCCACAGCACATCTCGACCGTGCCACGTGGCATGTTCGAGTGCAAGGCA
TGCAAGAAGGTGTTTACATCGCACCAGGCTCTTGGCGGGCACCGTGCCAGCCACAAGAAG
GTGAAAGGATGCTTCGCCGCGAAGCTCGAGAGCAGCCGCAACGAGACTAGTCAGACTCAG
ACTCAGCAGCAACACGTCTCAGCCGCTCCTCATGACAATACCAGGGCCACCACCTCTCAT
GTCATCACCAGCGATATCAGCATGGATGCAAACACGATCGGTGCCAGTGCTGATGCTGAC
GGCAAGGCAGCGGCAAGCGGCGTTGGCGCAGGTGAAATTGTCCTCGCCGGAGCTTCGTCG
ACGGATATGGCCATGATGATGTCGGTCGAGGACTTCGCGCCGACACCGTTGGCGCCATCC
GCCGTCTCACCGTTCAAGAAGAAGGGGAAGGTGCACGAGTGCTCCATCTGCCACCGGGTG
TTCACGTCGGGGCAAGCGCTCGGCGGCCACAAGCGATGCCACTGGCTGACGTCGGGCGCA
ACGGACCCGCTCACGAAGCTCCAGCCCGTCGCCCAAGACCACGCCATGATGGCCGCCATG
TGCCACCAGCTCACGCTCGGGCGCCCAATATTCGACCCTACCGACCAGCGGATACTAGAC
CTTAACGTGCCGACGAACCCACTGGCAGAAGCGGTCGCGGCCAGGCAGCAGCAGCAGCAG
CAGGTCGCCGCTCTCAACGACGGCGCACTCTGCCTCAACGCGGCGGCGTCGGTGTACCTG
CAGTCCTGGACAGGGCACAGCAACGGGAGCCACGTGAACAAGACCACCGCGACGAGCAGC
CGCATCAACGACGCGGCCGGCGGCGTGACCACGGAGGACGATGAAGCGGACAGCACGAGC
GCCAAGAGAGCCAAGATCGGCGACCTCAAGGACATGAAAGTGGCAGGGGAGTCGTTGCCC
TGGCTGCAGGTTGGCATCGGAATTTCATCAGAGAGCAAAGAAAAGAACACTCAAGAGTGA

Peptide Sequence

PEP ID

Os02t0659100-01
PEP Infomation

pep chromosome:IRGSP-1.0:2:26668796:26671144:1 gene:Os02g0659100 transcript:Os02t0659100-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, C2H2-type domain containing protein. (Os02t0659100-01)
Sequence

MAMVVAGSHRPPPPPQSLRLVPPPPPQPPPPPLTYRHHCKVCKKGFMCGRALGGHMRAHG
IGDDNDTMDDDDGRDDDHSLSPCDGGGEPSEAAGSPTTTTTKRMYALRTNPGRPRNCRTC
ENCGKEFTSWKTLLDHGRCGLDEEDGRLDVSLRSPPLHDGGDENDGEEEEEGDDLTLAAG
GWSKGKRSRRAKVMAVGTGSVSELQLPAPSTEEEDLANFLVMLSSSSSSSSRVAQPAIVV
DDADQESCASGSKDEERNRFLVPQPISMAAPMMAQMTVIAPQVVPQHISTVPRGMFECKA
CKKVFTSHQALGGHRASHKKVKGCFAAKLESSRNETSQTQTQQQHVSAAPHDNTRATTSH
VITSDISMDANTIGASADADGKAAASGVGAGEIVLAGASSTDMAMMMSVEDFAPTPLAPS
AVSPFKKKGKVHECSICHRVFTSGQALGGHKRCHWLTSGATDPLTKLQPVAQDHAMMAAM
CHQLTLGRPIFDPTDQRILDLNVPTNPLAEAVAARQQQQQQVAALNDGALCLNAAASVYL
QSWTGHSNGSHVNKTTATSSRINDAAGGVTTEDDEADSTSAKRAKIGDLKDMKVAGESLP
WLQVGIGISSESKEKNTQE

Transcript Sequence

Transcript ID

Os02t0659100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:26668796:26671144:1 gene:Os02g0659100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, C2H2-type domain containing protein. (Os02t0659100-01)
Sequence

AGCGATCGATCTCGACCGCACCGGCCCCGCATGCCTGCCCACTGCCCAAATAAAGCGTCG
TCGATCGACCGCGCGCGATCATGGCGATGGTCGTCGCGGGGAGCCATCGGCCGCCGCCGC
CGCCGCAGTCGCTGCGGCTGGTCCCGCCACCGCCGCCGCAGCCTCCTCCTCCTCCTCTGA
CGTACAGGCACCACTGCAAGGTGTGCAAGAAGGGGTTCATGTGCGGTCGCGCGCTCGGCG
GCCACATGAGGGCGCACGGCATCGGCGACGACAACGACACGATGGACGACGACGACGGCC
GCGATGATGATCATTCGCTGTCACCGTGCGATGGTGGTGGCGAGCCGTCGGAGGCAGCCG
GGAGCCCGACGACGACGACGACGAAACGTATGTACGCGCTGCGGACCAATCCCGGGCGGC
CAAGGAACTGCAGGACATGCGAGAACTGCGGGAAGGAGTTCACGTCGTGGAAGACGTTGC
TGGATCATGGCAGGTGCGGCCTTGACGAGGAGGACGGTCGCCTCGACGTCTCGCTCCGTT
CGCCGCCGCTTCACGACGGTGGCGACGAAAACGACGGCGAGGAGGAGGAGGAGGGGGACG
ACCTCACACTGGCTGCGGGCGGGTGGTCGAAAGGGAAGCGCTCGCGCCGTGCTAAAGTGA
TGGCCGTCGGGACCGGCTCCGTGTCCGAGCTACAGCTGCCGGCTCCGTCTACCGAAGAGG
AAGACCTCGCCAACTTTCTCGTGATGCTCTCTTCTTCTTCGTCATCATCGTCGCGTGTTG
CACAGCCAGCCATCGTCGTCGACGACGCGGACCAAGAGTCCTGCGCATCAGGTAGCAAGG
ACGAGGAGAGGAACAGGTTCTTGGTGCCGCAGCCAATCTCGATGGCAGCCCCCATGATGG
CTCAGATGACAGTGATCGCTCCGCAAGTGGTGCCACAGCACATCTCGACCGTGCCACGTG
GCATGTTCGAGTGCAAGGCATGCAAGAAGGTGTTTACATCGCACCAGGCTCTTGGCGGGC
ACCGTGCCAGCCACAAGAAGGTGAAAGGATGCTTCGCCGCGAAGCTCGAGAGCAGCCGCA
ACGAGACTAGTCAGACTCAGACTCAGCAGCAACACGTCTCAGCCGCTCCTCATGACAATA
CCAGGGCCACCACCTCTCATGTCATCACCAGCGATATCAGCATGGATGCAAACACGATCG
GTGCCAGTGCTGATGCTGACGGCAAGGCAGCGGCAAGCGGCGTTGGCGCAGGTGAAATTG
TCCTCGCCGGAGCTTCGTCGACGGATATGGCCATGATGATGTCGGTCGAGGACTTCGCGC
CGACACCGTTGGCGCCATCCGCCGTCTCACCGTTCAAGAAGAAGGGGAAGGTGCACGAGT
GCTCCATCTGCCACCGGGTGTTCACGTCGGGGCAAGCGCTCGGCGGCCACAAGCGATGCC
ACTGGCTGACGTCGGGCGCAACGGACCCGCTCACGAAGCTCCAGCCCGTCGCCCAAGACC
ACGCCATGATGGCCGCCATGTGCCACCAGCTCACGCTCGGGCGCCCAATATTCGACCCTA
CCGACCAGCGGATACTAGACCTTAACGTGCCGACGAACCCACTGGCAGAAGCGGTCGCGG
CCAGGCAGCAGCAGCAGCAGCAGGTCGCCGCTCTCAACGACGGCGCACTCTGCCTCAACG
CGGCGGCGTCGGTGTACCTGCAGTCCTGGACAGGGCACAGCAACGGGAGCCACGTGAACA
AGACCACCGCGACGAGCAGCCGCATCAACGACGCGGCCGGCGGCGTGACCACGGAGGACG
ATGAAGCGGACAGCACGAGCGCCAAGAGAGCCAAGATCGGCGACCTCAAGGACATGAAAG
TGGCAGGGGAGTCGTTGCCCTGGCTGCAGGTTGGCATCGGAATTTCATCAGAGAGCAAAG
AAAAGAACACTCAAGAGTGACCTGGTCATGACAAGGAGGTCATGCCGACTAATGAACTAA
GAAATTAATTAATTAATTAATTAGTGCTAATCTAATCCATATATATATATACATATTGTA
GGTGTACGTACTATATCAATGCTTTATGTGATCGGGATATATGTATGTGTATATACATCC
AATGTAAGTATTTACAAGTAGGGTCAATTCATGTGTTCCTAAAGGTTTGAGGCAACATCT
AGGGACGTATTGCTTGGGGGACTGTAAATTAATAGGCTAGCAAGCTTGATTCTAAAAGGT
TTCCTTACTGTACGATTCTTTGAGGAGCCTTGCTTTTTATTTTTATTTTTTTCCTTTTAT
TTTTTCTATTTTGTAACTAACCGATTATTTAATTTGCTGCTTCCAAAATGTATATATGCA
AGTTGATTT