Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0658900-01
CDS Infomation

cds chromosome:IRGSP-1.0:2:26663354:26667646:-1 gene:Os02g0658900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Sec20 family protein. (Os02t0658900-01)
Sequence

ATGGATAAGGTGACTCAAGCTGTTGAGAACCTAAAGGAGGAATGGAATCAAGCTGTTGCA
CAGCTTGAAGGGTGCATTGCTGCAATTGAATCATGTGGGAAGATGGGAAAGGGGACAGAG
GAAGCAAGTTCACTTCCTAGGTTAAACGGTTCTGCACAGGATGCACTGCAATTGCTCAAT
TCACTACAGTGCAGACTTGATCCTCTGGCAGAGCAGCTACCCACTTTTGAAGAAGTACAG
TCTGGCCAAGCAACCCTGCAGTCATGGAAGGAACAGTATCAGAAGCTGCGCATGAGGCTG
AGAAATGCTAACTTACAAGCAAATGCAAACATTAAAAAAGCTGCTCAAGAAGAGAGGGAG
CTTCTTCTAGGGGGTGGAGAAGAATCTACCATCCGCAGGCGTAATCTACAGACAAAGGCT
GGGATGACATCGGCTGCAGAAAGTATAACCGAGAGCCTCCGCCGATCTCGCCAGTTGATG
GTCCAGGAAGTGGAAAGAAGTGCAAATACCTTGGCAACATTTGATGAATCAACAAGTGTT
CTTCGTAAGGCTGAAGGTGAATATCAAGGACACCGCTCTTTGCTGATGCGTACTCGTGGT
TTGCTATCTACAATGCAACGGCAAGATGTTCTTGATAGGATCATCCTTACCATTGGTTTT
CTCATTTTCTCCTTGGCGGTGCTATATGTTGTCTCGAGACGTATTGGCCTGTTGACACTG
CAAAGGAAGCTGGCCGATGCCATCAGATCAGGCTCAATATCAGCTGAAGACGTTGTAGCA
AAAGTCAAGAATGTGCCTGTCCCAGCACCTGCTGCTCCTGCTCCTGCTCCTCCTATTTAT
GATGAACTATGA

Peptide Sequence

PEP ID

Os02t0658900-01
PEP Infomation

pep chromosome:IRGSP-1.0:2:26663354:26667646:-1 gene:Os02g0658900 transcript:Os02t0658900-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Sec20 family protein. (Os02t0658900-01)
Sequence

MDKVTQAVENLKEEWNQAVAQLEGCIAAIESCGKMGKGTEEASSLPRLNGSAQDALQLLN
SLQCRLDPLAEQLPTFEEVQSGQATLQSWKEQYQKLRMRLRNANLQANANIKKAAQEERE
LLLGGGEESTIRRRNLQTKAGMTSAAESITESLRRSRQLMVQEVERSANTLATFDESTSV
LRKAEGEYQGHRSLLMRTRGLLSTMQRQDVLDRIILTIGFLIFSLAVLYVVSRRIGLLTL
QRKLADAIRSGSISAEDVVAKVKNVPVPAPAAPAPAPPIYDEL

Transcript Sequence

Transcript ID

Os02t0658900-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:26663354:26667646:-1 gene:Os02g0658900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Sec20 family protein. (Os02t0658900-01)
Sequence

ATTCACGCGATTGACGCGAGCGAGGGACGACGACTCCGACGATCTTACTCCGGCGAGGCG
AGACGACGGCGACTGCCGACCGGCGAGTTCGCTCCATCTTCCCCAGAGAACCCCCTCATT
CTCCCTCCGGCGAGCTTTCTTCGACGGAGAAGACGAGACGCGGACGAGCGACCTCCCTCC
GGCGACGACAACAGCCTACTCCGGCGAGCCCCCTCCTCCCTACGGTGAGTCCCCTTCTCC
TCCCTCCGGTGAGCCGCTACCGCCTCGCCGCGCGCCCTTGTCCGCCGCCCACCGCCGGTC
CGCCGCCTCCCAGACCATCCCTCTAAGCCCCGATCCCCCACTTCCCCCTCCCAAGCGCCA
CCCTCCCCCCACCCCCACATCCCCTTCGCACTCACGCGCAGCGCCCGTTGACCGCGCCGC
TGTCAATTCGCCGCCCTCGGCTGTCGCGGGGTCGCGCGGTCGCGGGATCGCGCCACCGCC
CTTGGCCGTCGCGGGGTCGAGCCGCTGCCGTCGGCCGTCGAGCTACCCCGAGAGGCCGAG
AAACCCTAAGATATTAGGATGGATAAGGTGACTCAAGCTGTTGAGAACCTAAAGGAGGAA
TGGAATCAAGCTGTTGCACAGCTTGAAGGGTGCATTGCTGCAATTGAATCATGTGGGAAG
ATGGGAAAGGGGACAGAGGAAGCAAGTTCACTTCCTAGGTTAAACGGTTCTGCACAGGAT
GCACTGCAATTGCTCAATTCACTACAGTGCAGACTTGATCCTCTGGCAGAGCAGCTACCC
ACTTTTGAAGAAGTACAGTCTGGCCAAGCAACCCTGCAGTCATGGAAGGAACAGTATCAG
AAGCTGCGCATGAGGCTGAGAAATGCTAACTTACAAGCAAATGCAAACATTAAAAAAGCT
GCTCAAGAAGAGAGGGAGCTTCTTCTAGGGGGTGGAGAAGAATCTACCATCCGCAGGCGT
AATCTACAGACAAAGGCTGGGATGACATCGGCTGCAGAAAGTATAACCGAGAGCCTCCGC
CGATCTCGCCAGTTGATGGTCCAGGAAGTGGAAAGAAGTGCAAATACCTTGGCAACATTT
GATGAATCAACAAGTGTTCTTCGTAAGGCTGAAGGTGAATATCAAGGACACCGCTCTTTG
CTGATGCGTACTCGTGGTTTGCTATCTACAATGCAACGGCAAGATGTTCTTGATAGGATC
ATCCTTACCATTGGTTTTCTCATTTTCTCCTTGGCGGTGCTATATGTTGTCTCGAGACGT
ATTGGCCTGTTGACACTGCAAAGGAAGCTGGCCGATGCCATCAGATCAGGCTCAATATCA
GCTGAAGACGTTGTAGCAAAAGTCAAGAATGTGCCTGTCCCAGCACCTGCTGCTCCTGCT
CCTGCTCCTCCTATTTATGATGAACTATGATTTACTTTTGTGTATTGTTTGTACATGTAG
ATTCAGAAGAAAATATTCACCATCATTGTCAGTTTTATATAGTAAACTTTAAAAATTCTG
ATTAAGGTCTCTATTAACTTTTTTTACCGAG