Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0658800-01
CDS Infomation

cds chromosome:IRGSP-1.0:2:26648837:26650582:1 gene:Os02g0658800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BETA-EXPANSIN 11 description:Beta-expansin. (Os02t0658800-01)
Sequence

ATGGCGAAATCTTGCACCTTGGTACTACTACTTGTCGCACTGGTCGGGCTCTCACTTCTT
GTGAGCCCCATTGCTTGCTCCCGCAAGCTCAGCAAGCCGAAACCCAAGCCGAAGCCGAGC
ATGAAGAAGCCGGTGGTCCGGGCTCACAACAACTACACCGGTAGCCCGTCGGTGACGGTC
ACCACCGGCTGGGCCGCCGCCGGCGCCACGTACTACGGCGCCCCCAACGGCGACGGCAGC
GACGGCGGCGCTTGCGGCTACCAGACCGCCGTCGGGCAGCGGCCGTTCTCGTCGATGATC
GCCGCCGGGAGCCCGTCGCTGTACAAGGGAGGCAAGGGGTGCGGCGCGTGCTATGAGGTT
AAATGCACGACCAACGCAGCTTGCTCCGGCCAGCCAGCCACCGTCGTCATCACCGACGAG
TGCCCCGGGGGCATCTGCCTCGCCGGCGCCGCGCACTTCGACATGAGCGGCACTTCCATG
GGCGCCATGGCCAAGCCCGGCATGGCCGACAAGCTCCGCGCCGCCGGTATCCTCCAGGTC
CAGTACAGAAGGGTGCCATGCAAGTACAGCGGCGTGAACATCGCGTTCAGGGTTGACCAG
GGGGCAAACCCGTTCTACTTCGAGGTGCTCATCGAGTTCGAGGACGGCGACGGCGACCTC
AACGCCGTCGACCTGATGGAGGCCGGCTGCGGCTGGACGCCGATGGTGCAGAACTGGGGC
GCGCTCTGGCGGTACAACTCCAACACCGGCAAGGCCCTGAAGGCGCCATTCTCGCTCCGC
CTCACCTCCGACTCCGGCAAGGTGCTCGTCGCAAACAACGTCATCCCGGCGAGCTGGAAG
CCCGGCGTGACGTACCGCTCCCTGGTGAACTACTCCTAA

Peptide Sequence

PEP ID

Os02t0658800-01
PEP Infomation

pep chromosome:IRGSP-1.0:2:26648837:26650582:1 gene:Os02g0658800 transcript:Os02t0658800-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BETA-EXPANSIN 11 description:Beta-expansin. (Os02t0658800-01)
Sequence

MAKSCTLVLLLVALVGLSLLVSPIACSRKLSKPKPKPKPSMKKPVVRAHNNYTGSPSVTV
TTGWAAAGATYYGAPNGDGSDGGACGYQTAVGQRPFSSMIAAGSPSLYKGGKGCGACYEV
KCTTNAACSGQPATVVITDECPGGICLAGAAHFDMSGTSMGAMAKPGMADKLRAAGILQV
QYRRVPCKYSGVNIAFRVDQGANPFYFEVLIEFEDGDGDLNAVDLMEAGCGWTPMVQNWG
ALWRYNSNTGKALKAPFSLRLTSDSGKVLVANNVIPASWKPGVTYRSLVNYS

Transcript Sequence

Transcript ID

Os02t0658800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:26648837:26650582:1 gene:Os02g0658800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BETA-EXPANSIN 11 description:Beta-expansin. (Os02t0658800-01)
Sequence

AACTCACCCAAGAACACACTCGAGCTGAGCACGTCTAGCTAGCTATATCTCTCAACATCT
TCCGAGCTACTACTAGTAGCTAGCTAGCTAGAGGAAGCAGCAGCAATGGCGAAATCTTGC
ACCTTGGTACTACTACTTGTCGCACTGGTCGGGCTCTCACTTCTTGTGAGCCCCATTGCT
TGCTCCCGCAAGCTCAGCAAGCCGAAACCCAAGCCGAAGCCGAGCATGAAGAAGCCGGTG
GTCCGGGCTCACAACAACTACACCGGTAGCCCGTCGGTGACGGTCACCACCGGCTGGGCC
GCCGCCGGCGCCACGTACTACGGCGCCCCCAACGGCGACGGCAGCGACGGCGGCGCTTGC
GGCTACCAGACCGCCGTCGGGCAGCGGCCGTTCTCGTCGATGATCGCCGCCGGGAGCCCG
TCGCTGTACAAGGGAGGCAAGGGGTGCGGCGCGTGCTATGAGGTTAAATGCACGACCAAC
GCAGCTTGCTCCGGCCAGCCAGCCACCGTCGTCATCACCGACGAGTGCCCCGGGGGCATC
TGCCTCGCCGGCGCCGCGCACTTCGACATGAGCGGCACTTCCATGGGCGCCATGGCCAAG
CCCGGCATGGCCGACAAGCTCCGCGCCGCCGGTATCCTCCAGGTCCAGTACAGAAGGGTG
CCATGCAAGTACAGCGGCGTGAACATCGCGTTCAGGGTTGACCAGGGGGCAAACCCGTTC
TACTTCGAGGTGCTCATCGAGTTCGAGGACGGCGACGGCGACCTCAACGCCGTCGACCTG
ATGGAGGCCGGCTGCGGCTGGACGCCGATGGTGCAGAACTGGGGCGCGCTCTGGCGGTAC
AACTCCAACACCGGCAAGGCCCTGAAGGCGCCATTCTCGCTCCGCCTCACCTCCGACTCC
GGCAAGGTGCTCGTCGCAAACAACGTCATCCCGGCGAGCTGGAAGCCCGGCGTGACGTAC
CGCTCCCTGGTGAACTACTCCTAAATTAATTACAGCTCTCTCCACATCTCCTGCAAGAAG
CTGCAGTGCAGAGTTGCGGTAAATTGGTAATTACAGATTTATAATTAGCCTCGGGTTAAT
TATATGGCGGGAAATGTGCGTCCGGGTGTTGCGAGAGGCGGTGTCAGAAGAGGAGGAAAG
GAGGTTTAAGAATCGTGTTCTTCCCTCCACGGTCTCTGCATTCCCCTAGTGATGTGACTG
TGTCGTCGTCGATTTGTCTGTAAAATTTTATTTTTCTTAGTTATATCTTCCTCTGTTATT
GTCATGTTGAGGGAGAAGCTTGAGCTGCAACTAATGTTGCATGCCGATGTATCAAGTTTG
TGTGTGTGTGTTTTTTTTGTACCACGCAAATCTTTCAGATAAATGGATTAGTACTGTC