Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0656200-01
CDS Infomation

cds chromosome:IRGSP-1.0:2:26504378:26510073:-1 gene:Os02g0656200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ceramide kinase description:Similar to Ceramide kinase. (Os02t0656200-01)
Sequence

ATGGAAGGCGGCGGCGAGGCGCTCTTCCTGGACGGCGTCGGGGAGGTCACGGTGGCCGTC
GGCGACGACGGCCTCTCCTTCCAGCCCCTTCACCAGGAAGTGAGTTCTTCATGTTGGTCA
TCTATCATAATGCAACCTAAGTTAGAGAGCAAGCTTAAGTTTTCAGATGTCTATGCTGTA
GAGCTTCTTGAGGTGGGTCCTGTATGTGAACCTTGGAATGCAAGAGCTACCGTTCAAGGC
AAGATAAATACTGAGATGAACCGATTTGTCATACACACGGTCACAAGACCAAGAAAAAGA
CCATCTCCATGGGTACCTTGTGAATATATTTTTGGTCATAAAGACCAGCAAACCTGCAAA
ACTTGGGTGGAGCATATAAAGACGTGCATAAATAAGGAACAGGATAGGCCCAAGAGCCTC
ATGGTATTTGTCCATCCATTGTGTGGAAAAGGTAGAGGGTGTAAGAATTGGGAAACAGTA
GCTCCATTATTTGAGCGGGCAAAAGTAAAAACGAAGGTGATAGTCACACAGCGAGCAGGA
CATGCATATGATACTTTAGCATCTTTATCAGATAAAGATCTCAAGAAATTTGATGGTGTT
ATTGCAGTGGGTGGTGATGGTTTATTTAATGAAATTTTGAATGGGCTACTAAGTACAAGG
CACACAAATTCTTATCCTCCAACTCCAGAAGGGTTTGGATATTTCAGAAACAACATGAAG
TGTCAAGAACATAGAAATAATGATCTAAGCAATAGTGAGCTCACAGGAGATGATGCAAAT
GCCATCTCTGGAAGTTCTAACACACCTGATGATCATGAGCCCCTTCTTTCAACCACACGA
TCTACAGGATTGGACATCTCGTCATCAGATTCTAGTGATGAACCATGCAATGGAGATCAG
GTGCCTTTAGTCTCCTTCCCAAATAATTGGTTTAGGCTTGGAATAATTCCTTCTGGCTCA
ACGGATGCTATTGTTCTCAGTACAACTGGGGAGCGAGATCCTGTGACTTCTGCTCTGCTT
ATTATCCTCGGCAGAAGGATATCACTTGATATAGCTCAAGTTGTCAGATGGAAAAGTAGC
CCATCAGCTGAGGTTTCACCAACTGTGCGCTATGCTGCTTCGTTTGCAGGGTATGCTACT
GTCTCTTAG

Peptide Sequence

PEP ID

Os02t0656200-01
PEP Infomation

pep chromosome:IRGSP-1.0:2:26504378:26510073:-1 gene:Os02g0656200 transcript:Os02t0656200-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ceramide kinase description:Similar to Ceramide kinase. (Os02t0656200-01)
Sequence

MEGGGEALFLDGVGEVTVAVGDDGLSFQPLHQEVSSSCWSSIIMQPKLESKLKFSDVYAV
ELLEVGPVCEPWNARATVQGKINTEMNRFVIHTVTRPRKRPSPWVPCEYIFGHKDQQTCK
TWVEHIKTCINKEQDRPKSLMVFVHPLCGKGRGCKNWETVAPLFERAKVKTKVIVTQRAG
HAYDTLASLSDKDLKKFDGVIAVGGDGLFNEILNGLLSTRHTNSYPPTPEGFGYFRNNMK
CQEHRNNDLSNSELTGDDANAISGSSNTPDDHEPLLSTTRSTGLDISSSDSSDEPCNGDQ
VPLVSFPNNWFRLGIIPSGSTDAIVLSTTGERDPVTSALLIILGRRISLDIAQVVRWKSS
PSAEVSPTVRYAASFAGYATVS

Transcript Sequence

Transcript ID

Os02t0656200-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:26504378:26510073:-1 gene:Os02g0656200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ceramide kinase description:Similar to Ceramide kinase. (Os02t0656200-01)
Sequence

GCATTTGCCCCTCCTCTTCCCCCACCGCGGGTGACCGGGGAGGAGTCGTGAGACCAAGCA
ACAGCAAGCGGGAAAGGCCATGGAAGGCGGCGGCGAGGCGCTCTTCCTGGACGGCGTCGG
GGAGGTCACGGTGGCCGTCGGCGACGACGGCCTCTCCTTCCAGCCCCTTCACCAGGAAGT
GAGTTCTTCATGTTGGTCATCTATCATAATGCAACCTAAGTTAGAGAGCAAGCTTAAGTT
TTCAGATGTCTATGCTGTAGAGCTTCTTGAGGTGGGTCCTGTATGTGAACCTTGGAATGC
AAGAGCTACCGTTCAAGGCAAGATAAATACTGAGATGAACCGATTTGTCATACACACGGT
CACAAGACCAAGAAAAAGACCATCTCCATGGGTACCTTGTGAATATATTTTTGGTCATAA
AGACCAGCAAACCTGCAAAACTTGGGTGGAGCATATAAAGACGTGCATAAATAAGGAACA
GGATAGGCCCAAGAGCCTCATGGTATTTGTCCATCCATTGTGTGGAAAAGGTAGAGGGTG
TAAGAATTGGGAAACAGTAGCTCCATTATTTGAGCGGGCAAAAGTAAAAACGAAGGTGAT
AGTCACACAGCGAGCAGGACATGCATATGATACTTTAGCATCTTTATCAGATAAAGATCT
CAAGAAATTTGATGGTGTTATTGCAGTGGGTGGTGATGGTTTATTTAATGAAATTTTGAA
TGGGCTACTAAGTACAAGGCACACAAATTCTTATCCTCCAACTCCAGAAGGGTTTGGATA
TTTCAGAAACAACATGAAGTGTCAAGAACATAGAAATAATGATCTAAGCAATAGTGAGCT
CACAGGAGATGATGCAAATGCCATCTCTGGAAGTTCTAACACACCTGATGATCATGAGCC
CCTTCTTTCAACCACACGATCTACAGGATTGGACATCTCGTCATCAGATTCTAGTGATGA
ACCATGCAATGGAGATCAGGTGCCTTTAGTCTCCTTCCCAAATAATTGGTTTAGGCTTGG
AATAATTCCTTCTGGCTCAACGGATGCTATTGTTCTCAGTACAACTGGGGAGCGAGATCC
TGTGACTTCTGCTCTGCTTATTATCCTCGGCAGAAGGATATCACTTGATATAGCTCAAGT
TGTCAGATGGAAAAGTAGCCCATCAGCTGAGGTTTCACCAACTGTGCGCTATGCTGCTTC
GTTTGCAGGGTATGCTACTGTCTCTTAGACATGATATATAGCTAATACTACCACAAATTT
GATTTCTGATTACCTATTTCTTACATGTGGCTGTGTCGTTGTGCAGTACCAGCATAGGCA
TCCTATGTCAACGTTAACATCAGTCCATAAAAGGGCTTAAAGTTCTGGAGAAAACTTCAG
AGCTTCAGTTGAAGTCACTTTCAAAAAGTTAACCCAAGCTAGATTGTTATGTTTTTAACC
TAAATCTTTTAGGGAAACATATTATTTTCTTGTGTTCTTCCTAGCATCACAGGCAGTCAT
GGATTGCACTGAACATACACTACCTCCGTCCGTTTTTTAATAGACGACGCCGTTGACTTT
TTGTCACGTGTTTGACCATTCGTCTTGTTCAAAAAAAAACTTACGTAATTATAATTTATT
TTGTTGTGAGTTGTTTTATCACTCAAGGTACTTTAAACATGGTTTATATCTTATACATTT
GCATACATTTTTTGAATAAAACGAATGCTCAAACATGTGTTCAAAAGTCAACAGCGTCAT
CCATTAAAAAATGGAGTCTTTTGGATATGACCATCTGCGGATTCCTCTTTTGCATAACTG
CTGAAACCCTGTGGTTTAAATCTGATTACAGATATGGATTTTATGGAGAAGTTATAAGGG
AGAGTGAAAAGTACAGGTGGATGGGTCCTGCGCGATATGACTTCTCTGGAACAATGGTAT
TTTTGAAGCACAGATCTTATGAGGCAAAAGTGGCTTTTCTTGAAAATGGAAACACTCATT
CACTTACAGCATCGGCAGAGAATAATGCAAATGGAGTCCAAACACTGCAATACCATCAAA
ATAGACATCGGAAAACCATCTGCCGAACAAATTGTTTAATATGCAAAGGAACTTCAACAT
CTGAACAGAATTCAGAAGATGAAAATCCAGACAGTTCCAGAACAGCTTGTGAGACCCCAA
AATGGGTCTGGTCCAAGGGTCGTTTTCTCAGTGTTGGTGCAGCTGTCATTTCATGTCGTA
ACGAAAGAGCCCCTGATGGTCTAGTAGCTGACGCACACCTATCTGATGGTTTTCTTCATC
TTCTGCTCATTAGAGATTGCCCTCTTCCCTTTTACTTATGGCATCTAACACAATTTACCA
AGAAGGGCTCAGATCCTCTGAGCTTCAAGTTTGTCGAACATCATAAGACACAAGCATTTA
CTTTTATATCGTCACATGACGAAAGTGTCTGGAACTTGGACGGAGAACTTCTTCAGGCCT
GTGAGGTATCTGTTCAAGCTTTCCGAGGCCTTGTCAACCTCTTTGCGTCAGGACCGGAGG
TGTAGCTATTCCCTTCTCTTTTTTCTCCCGAAGGGACGATTGCAAAAGGCCCCGGCGTGT
TGTACTTGTATGCTGTACAGAAGTTCCTGTTCGATACTCTGTTGCTATTTTTTCTGTAGA
AAATGGAAAACACAGCGCCCAGATTACGGAATGCAGAAGCCTGGGTCGCTTCAATTTTGC
C