Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os02t0654400-01
CDS Infomation	cds chromosome:IRGSP-1.0:2:26396501:26403263:-1 gene:Os02g0654400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Transcription initiation factor TFIID component TAF4 domain containing protein. (Os02t0654400-01)
Sequence	ATGTCTACCCAATTAACGGAACACGATCACCAGCCAGAACAAGAACCACCACATTCTGAA AACCATCTGAAACAGGCAGAGCCAAACAGCTTCCAGTTCGCTGAAAAGGAAACAGGCTAT GCTGGTCTACAGAATTTCACAGGCCCCAAGGTGGATGTGGGTCAGACTTCAGGAGAGCAG CAGCATGTAAAACAGATGGTCGGTCAGCAAGCACCACCTGGTGCACAGGACGCAAGGAAG CGGGGATACCAACCGTCTATACCATTTAATATGTTGATTCCAATCCTACAGGCTCATCTT GACAGAGACAAGGATATGCAGCTTCAAACTGTGTGGGCAAAACTTAGGCGTAATGAAGTT CATAAAGATGATTTCTTGAGAGTTATCAGGAACATCGTTGGAGATCAAATGCTAAAGCAA GCAGCCCATAAAGTTTTTGCACAGATGCAAGCCCAGGCACAGAGAAGTGGCCAGGCAAAT GCAAATCAGCAGGCTAATGCAAATCAGTATTCTTTACAATCCCAAGTATCTTCCAGCGGT TCAGCTCAATTACATGATCAGCAAGTTCACGTGTCCACCACACCTAATCAGGGCCAAAAA AACCAAGCATTGTCTTCATCCCAAACCTTTGTGCAATCTGGCACTCAGGTGCAGAGCAGT ATGACTGCTCATGATAATTCCATCCAACGGCCAGATGCAAAGGGAATGCATGTTACGCCG AACCGACCTCCTGTTATGAACTCAGCAATTTCTGCACAAACAATGAACAAACAGCAGCAA CCCACACAAGTCCAGCAAGCCTCACAGCAAATATATGGAACAACTAATCGCCCTGACCAG CCATACACTAGGCCAATCGGTGGTTCAACACCTCTTAGCTCACTGAGTTCAGAATCAGAA ATAAGGCCTTCCTCTCATCCTGCAAAAATGGAGATTCTTCCTTCTCATCCAATGACACAA CAAAATGCAGCTGCGCAGCAAATGCAACAGAACAAGGATGTGAAGACTAATGCTTCTAAT CCAAGGAGTAATGCAAAGCAAGATTCGGGGACAGGTAAGGGTCGTGCAGTTGGCACTGGA GGTTCTTCAACGAAATCGCAAGGGAAGCAGGGCCCCCCTAACTTTTCCACACCTCCCGCT GCAAAGAGTAACAAGAAAACTGCTGGGCAGAAGAAGTCATTGGAAACATCAGGCTCTACA CCACCCCCTCCTAGCAAAAAGCAGAAGACTTCTGGAACCTTCCAAGAACAAAGCTTCGAT CAACTAAATGATGTCACGGCTGTTAGTGGTGTTAATCTTAGGGAAGAAGAAGAACAGCTA CTCTCTGCCCCAAAGGAAGAGAGCTGGGCCTCAGAAGAAGCAAGGAAAATTGCACAGGAA GAAGATGGCAAGCTTTTTCTGCAGAAAGGCCCACTTCTGAAGAAACTAGCAGCAATCGTT CCTAAATGCAATTTGAAGAGCATTGGTGGTGATGTTGAGCATTGTTTATCAATGTGCGTG GAGGAGCGATTGCGAAGATTTATCAGTACTCTCATAAGAGTTTCAAAGCAGAGAATTGAC ACAGAAAAGTCTGGCCATCAACTAGTTATAACATCAGATGTTGGCCGGCAAATTTTGCGG ATGAACCAGAAAGCTAAGGAAGAATGGGATAAAAAACAAGCAGAGGAAACAGACAAGAAC AAGAAACAAAATGAGGTTGACGGCGGTGGCACTGTGGAATTAGACAAGGAAAAGGAGGAA ACTCGTTCAAAGAATGCAAAGCCCAACAAAGAAGAAGATGACAAGATGAGAACAACAGCT GCAAATGTTGCCGCCCGACAGGCTGTTGGAGGAAGTGATATGCTGTCCAAATGGCAACTG ATGGCTGAACAAGCTAGACAGAAACGCGAAGGCCTTGATCTGGCTGCTTCTTCACAGCGC GGGACAGCTTCCAGGTCGCATATGGCTGGGAAAGGTCCCACAGATCACCACGAAGCTTCG AAGAGGACCCATTCTGCAGCGTTTGGAACTGGAGGCATGAACAGGCAAGGCAGGGGTCCA TTTGCAGCGTCTCATCCAAAAGGACCACAAAGAACTATTTCTATGAAGGATGTAATATGT GTCCTCGAGAGGGAACCTCAGATGACAAAATCGCGGCTGATATATCGGCTCTATGAGCGG TTGCCTGGAGATTCCACCAGAGATTAG

Peptide Sequence

PEP ID	Os02t0654400-01
PEP Infomation	pep chromosome:IRGSP-1.0:2:26396501:26403263:-1 gene:Os02g0654400 transcript:Os02t0654400-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Transcription initiation factor TFIID component TAF4 domain containing protein. (Os02t0654400-01)
Sequence	MSTQLTEHDHQPEQEPPHSENHLKQAEPNSFQFAEKETGYAGLQNFTGPKVDVGQTSGEQ QHVKQMVGQQAPPGAQDARKRGYQPSIPFNMLIPILQAHLDRDKDMQLQTVWAKLRRNEV HKDDFLRVIRNIVGDQMLKQAAHKVFAQMQAQAQRSGQANANQQANANQYSLQSQVSSSG SAQLHDQQVHVSTTPNQGQKNQALSSSQTFVQSGTQVQSSMTAHDNSIQRPDAKGMHVTP NRPPVMNSAISAQTMNKQQQPTQVQQASQQIYGTTNRPDQPYTRPIGGSTPLSSLSSESE IRPSSHPAKMEILPSHPMTQQNAAAQQMQQNKDVKTNASNPRSNAKQDSGTGKGRAVGTG GSSTKSQGKQGPPNFSTPPAAKSNKKTAGQKKSLETSGSTPPPPSKKQKTSGTFQEQSFD QLNDVTAVSGVNLREEEEQLLSAPKEESWASEEARKIAQEEDGKLFLQKGPLLKKLAAIV PKCNLKSIGGDVEHCLSMCVEERLRRFISTLIRVSKQRIDTEKSGHQLVITSDVGRQILR MNQKAKEEWDKKQAEETDKNKKQNEVDGGGTVELDKEKEETRSKNAKPNKEEDDKMRTTA ANVAARQAVGGSDMLSKWQLMAEQARQKREGLDLAASSQRGTASRSHMAGKGPTDHHEAS KRTHSAAFGTGGMNRQGRGPFAASHPKGPQRTISMKDVICVLEREPQMTKSRLIYRLYER LPGDSTRD

Transcript Sequence

Transcript ID	Os02t0654400-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:2:26396501:26403263:-1 gene:Os02g0654400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Transcription initiation factor TFIID component TAF4 domain containing protein. (Os02t0654400-01)
Sequence	GGTTGGAACACAGGTCGGGTTCAGAGTGGCAATCAGTAGGTCGTCCCAGGGCCAGCGCCG ATCCCCATCCGTCCCGCGAGCAAGCAGAGGCGGCGCCGTCGCTCGTCCTGCTGCTTCCGC CGCATCCTCCGCCACCGCCGCCTGCGCCGATCCCCCAACCGTCCCGCGAGCGAGCGAGCG AGCGAGCAGGGGCGCCGTCGTTCGTCCTGCTTCTTCCGCCGCTTCCTGGTACTTTACCCC AGAATAGCAGTGATGTGTCAAAATCTATAGTTGGTCAGGTGCAAGCAGAAGAGCAGGAAG GAAATGGCCAGGCAAACCAACAAGCAGTGCAGCAACATATGATTTTAGCAGGCCAGTTGT CTCAGCCAAAATCGTTAACTGAAGGTTTGGAAAATAATGTCTACCCAATTAACGGAACAC GATCACCAGCCAGAACAAGAACCACCACATTCTGAAAACCATCTGAAACAGGCAGAGCCA AACAGCTTCCAGTTCGCTGAAAAGGAAACAGGCTATGCTGGTCTACAGAATTTCACAGGC CCCAAGGTGGATGTGGGTCAGACTTCAGGAGAGCAGCAGCATGTAAAACAGATGGTCGGT CAGCAAGCACCACCTGGTGCACAGGACGCAAGGAAGCGGGGATACCAACCGTCTATACCA TTTAATATGTTGATTCCAATCCTACAGGCTCATCTTGACAGAGACAAGGATATGCAGCTT CAAACTGTGTGGGCAAAACTTAGGCGTAATGAAGTTCATAAAGATGATTTCTTGAGAGTT ATCAGGAACATCGTTGGAGATCAAATGCTAAAGCAAGCAGCCCATAAAGTTTTTGCACAG ATGCAAGCCCAGGCACAGAGAAGTGGCCAGGCAAATGCAAATCAGCAGGCTAATGCAAAT CAGTATTCTTTACAATCCCAAGTATCTTCCAGCGGTTCAGCTCAATTACATGATCAGCAA GTTCACGTGTCCACCACACCTAATCAGGGCCAAAAAAACCAAGCATTGTCTTCATCCCAA ACCTTTGTGCAATCTGGCACTCAGGTGCAGAGCAGTATGACTGCTCATGATAATTCCATC CAACGGCCAGATGCAAAGGGAATGCATGTTACGCCGAACCGACCTCCTGTTATGAACTCA GCAATTTCTGCACAAACAATGAACAAACAGCAGCAACCCACACAAGTCCAGCAAGCCTCA CAGCAAATATATGGAACAACTAATCGCCCTGACCAGCCATACACTAGGCCAATCGGTGGT TCAACACCTCTTAGCTCACTGAGTTCAGAATCAGAAATAAGGCCTTCCTCTCATCCTGCA AAAATGGAGATTCTTCCTTCTCATCCAATGACACAACAAAATGCAGCTGCGCAGCAAATG CAACAGAACAAGGATGTGAAGACTAATGCTTCTAATCCAAGGAGTAATGCAAAGCAAGAT TCGGGGACAGGTAAGGGTCGTGCAGTTGGCACTGGAGGTTCTTCAACGAAATCGCAAGGG AAGCAGGGCCCCCCTAACTTTTCCACACCTCCCGCTGCAAAGAGTAACAAGAAAACTGCT GGGCAGAAGAAGTCATTGGAAACATCAGGCTCTACACCACCCCCTCCTAGCAAAAAGCAG AAGACTTCTGGAACCTTCCAAGAACAAAGCTTCGATCAACTAAATGATGTCACGGCTGTT AGTGGTGTTAATCTTAGGGAAGAAGAAGAACAGCTACTCTCTGCCCCAAAGGAAGAGAGC TGGGCCTCAGAAGAAGCAAGGAAAATTGCACAGGAAGAAGATGGCAAGCTTTTTCTGCAG AAAGGCCCACTTCTGAAGAAACTAGCAGCAATCGTTCCTAAATGCAATTTGAAGAGCATT GGTGGTGATGTTGAGCATTGTTTATCAATGTGCGTGGAGGAGCGATTGCGAAGATTTATC AGTACTCTCATAAGAGTTTCAAAGCAGAGAATTGACACAGAAAAGTCTGGCCATCAACTA GTTATAACATCAGATGTTGGCCGGCAAATTTTGCGGATGAACCAGAAAGCTAAGGAAGAA TGGGATAAAAAACAAGCAGAGGAAACAGACAAGAACAAGAAACAAAATGAGGTTGACGGC GGTGGCACTGTGGAATTAGACAAGGAAAAGGAGGAAACTCGTTCAAAGAATGCAAAGCCC AACAAAGAAGAAGATGACAAGATGAGAACAACAGCTGCAAATGTTGCCGCCCGACAGGCT GTTGGAGGAAGTGATATGCTGTCCAAATGGCAACTGATGGCTGAACAAGCTAGACAGAAA CGCGAAGGCCTTGATCTGGCTGCTTCTTCACAGCGCGGGACAGCTTCCAGGTCGCATATG GCTGGGAAAGGTCCCACAGATCACCACGAAGCTTCGAAGAGGACCCATTCTGCAGCGTTT GGAACTGGAGGCATGAACAGGCAAGGCAGGGGTCCATTTGCAGCGTCTCATCCAAAAGGA CCACAAAGAACTATTTCTATGAAGGATGTAATATGTGTCCTCGAGAGGGAACCTCAGATG ACAAAATCGCGGCTGATATATCGGCTCTATGAGCGGTTGCCTGGAGATTCCACCAGAGAT TAGGCTTGAATCGTCATTTATTTGGTGTATGTATGCACATTTGTGTAACAATATCGAGCT ATAACTTATTGCTCTACTCCTTCCATTTTCTCTGGTTTGGAGTTGCGAGGTGTGGGTGGG TGTGTTGGGGGAGGGGGGGGGGGGACAAAACTAGTGTAACAAGTTAGCTGACATGGTACT CTTAGAATATGAACACATAAGATGTACTTCCAAACAAAATGGTCATGTAAAGATTATCAC AGTGTAACAGATGGCAAGATTGCCCATTGCTGCCTGCTGGTGCATGCGCTTGCTCATTGT ACTGTTATAATTCAGTGAGATAATTTGG