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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0649300-01
CDS Infomation

cds chromosome:IRGSP-1.0:2:26143311:26144729:1 gene:Os02g0649300 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HOMEOBOX GENE 24 description:HD-ZIP I protein, Transcription activator, Stress response, Panicle development (Os02t0649300-01)
Sequence

ATGGAGAGCGACTGCCAGTTCTTGGTGGCGCCGCCGCAGCCGCACATGTACTACGACACG
GCGGCGGCGGCGGTGGACGAGGCGCAGTTCTTGCGGCAGATGGTGGCCGCGGCGGATCAC
CACGCGGCCGCCGCTGGGAGAGGAGGCGGCGACGGCGACGGCGGCGGCGGCGGCGGCGGT
GGCGGGGAGAGGAAGCGGCGGTTCACGGAGGAGCAGGTGCGGTCGCTGGAGACGACGTTC
CACGCGCGGCGGGCCAAGCTGGAGCCGCGGGAGAAGGCGGAGCTGGCGCGGGAGCTCGGG
CTGCAGCCGCGCCAGGTGGCCATCTGGTTCCAGAACAAGCGCGCCCGGTGGCGCTCCAAG
CAGATCGAGCACGACTACGCCGCGCTCCGCGCCCAGTACGACGCCCTCCACGCCCGCGTC
GAGTCGCTCAGGCAGGAGAAGCTCGCCCTCGCAGACCAGGTGGATGAGCTGAGGGGGAAG
CTGAACGAGCGGCAAGACCAGAGCGGCAGCTGCGACGGCGGCGGCGCCGAAGGGGACGAC
GACGACAAGAGGAATAGCGTGATGAACGCGAGCAGCAGCGGCCTCGTGGAGGAGGACTAC
GTGAGCTGCCTCGCGGTGCCGGTGGTGGACGTCTCGGAGGACGGCTCGGCGGCGTGCGGC
GGGTCGTCGTACGAGTACGACCATCACCTAGACTACTTGGGCGGCGGCCAGCTGCCCGAT
CCGTTCTGCGGCATGCCGGATCTGTGGGAGATATGGCCAATGGTGGAATGGAACGCAGTA
GCATGA

Peptide Sequence

PEP ID

Os02t0649300-01
PEP Infomation

pep chromosome:IRGSP-1.0:2:26143311:26144729:1 gene:Os02g0649300 transcript:Os02t0649300-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HOMEOBOX GENE 24 description:HD-ZIP I protein, Transcription activator, Stress response, Panicle development (Os02t0649300-01)
Sequence

MESDCQFLVAPPQPHMYYDTAAAAVDEAQFLRQMVAAADHHAAAAGRGGGDGDGGGGGGG
GGERKRRFTEEQVRSLETTFHARRAKLEPREKAELARELGLQPRQVAIWFQNKRARWRSK
QIEHDYAALRAQYDALHARVESLRQEKLALADQVDELRGKLNERQDQSGSCDGGGAEGDD
DDKRNSVMNASSSGLVEEDYVSCLAVPVVDVSEDGSAACGGSSYEYDHHLDYLGGGQLPD
PFCGMPDLWEIWPMVEWNAVA

Transcript Sequence

Transcript ID

Os02t0649300-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:26143311:26144729:1 gene:Os02g0649300 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HOMEOBOX GENE 24 description:HD-ZIP I protein, Transcription activator, Stress response, Panicle development (Os02t0649300-01)
Sequence

GAACACACACACTACTGCGACTGCTAGTGCTCTGGTCTTACATTCGACGAACTGATCGAT
ATTCGATACGACGTCTCCTCCTACCTGGAGCTTGGGAAAAATGGAGAGCGACTGCCAGTT
CTTGGTGGCGCCGCCGCAGCCGCACATGTACTACGACACGGCGGCGGCGGCGGTGGACGA
GGCGCAGTTCTTGCGGCAGATGGTGGCCGCGGCGGATCACCACGCGGCCGCCGCTGGGAG
AGGAGGCGGCGACGGCGACGGCGGCGGCGGCGGCGGCGGTGGCGGGGAGAGGAAGCGGCG
GTTCACGGAGGAGCAGGTGCGGTCGCTGGAGACGACGTTCCACGCGCGGCGGGCCAAGCT
GGAGCCGCGGGAGAAGGCGGAGCTGGCGCGGGAGCTCGGGCTGCAGCCGCGCCAGGTGGC
CATCTGGTTCCAGAACAAGCGCGCCCGGTGGCGCTCCAAGCAGATCGAGCACGACTACGC
CGCGCTCCGCGCCCAGTACGACGCCCTCCACGCCCGCGTCGAGTCGCTCAGGCAGGAGAA
GCTCGCCCTCGCAGACCAGGTGGATGAGCTGAGGGGGAAGCTGAACGAGCGGCAAGACCA
GAGCGGCAGCTGCGACGGCGGCGGCGCCGAAGGGGACGACGACGACAAGAGGAATAGCGT
GATGAACGCGAGCAGCAGCGGCCTCGTGGAGGAGGACTACGTGAGCTGCCTCGCGGTGCC
GGTGGTGGACGTCTCGGAGGACGGCTCGGCGGCGTGCGGCGGGTCGTCGTACGAGTACGA
CCATCACCTAGACTACTTGGGCGGCGGCCAGCTGCCCGATCCGTTCTGCGGCATGCCGGA
TCTGTGGGAGATATGGCCAATGGTGGAATGGAACGCAGTAGCATGATCATGCTAATCAAT
CAGCGTAGCATACAGTATATAAATATATATGTGTATGAGTACGTGTTGTATTGGGTCTAT
ATAGATATTTTGCTGCTGTTGCTGCTGCTGGCTTGTGCAGTCAGTTGGTCCGGAGAGATC
GACTAGAGCCGCGGCGCTCGTAAGCTAGACGGGAGAGCAGATTAGAGATGGAGGATGCAA
CCGGCCGGCCGGCAAACCATGCAACAATGCAAATCCACACATGCATTGCGTTGCACAGAT
AGAAATCCTCCGGCCGGTCGATCGCCGAGTCTTGCTGCTTGTTATGCTAGGATGCTACAT
TAATTATTCATGTTCGTGAATCTGGCTCCCCTGCCTCGGAGCCCGTTCGTGCACATATGT
GAAACATATATATCAACGCTGCGCATGTGTGCCATGCCCATGCGCATGCCGGCGCTTGTC
GTCCATGCTTTG