Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0643500-01
CDS Infomation

cds chromosome:IRGSP-1.0:2:25855643:25859028:1 gene:Os02g0643500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentapeptide repeat containing protein. (Os02t0643500-01)
Sequence

ATGGCTCTCCCCACCACCTCCCCCCTCGCCGCGGCCGCAGCGAGGCCCTGCGCGTTCCCG
ACGCCGTGGAGATGTCGCTCGCCCCCTCTTCGCCGCCTCCCGCACGTCTCCTGCCAGGCG
AACCGAGGGGGTTCTCGGGACGGCAATTCGTTGAGCACCTCGGCGGCGGCGGCGGCGGCG
GCGTCGCCGCCGCCGAGGTGGCGTGCCGCGGTGTCCGCGGCGCTCGCGGCGGCGATTGTG
TCCGCGGCGCCGGCCTACGCGGATCTTAACAAGTTCGAGGCGGAGCAGCGTGGGGAGTTC
GGCATTGGCTCCGCTGCGCAGTTTGGGTCGGCCGACCTCAAGAAGGCCGTCCATGTTAAT
GAGAACTTCAGGCGGGCAAACTTCACTGCTGCTGATATGAGGGAGTCAAATTTCAGTGGT
TCCACATTCAATGGTGCCTATCTTGAAAAGGCTGTTGCTTATAGAGCAAATTTTACTGGT
GCAGATTTGAGTGATACCTTGATGGATCGCATGGTGCTCAATGAAGCTAACCTTACAAAT
GCTGTGCTTGTACGGTCAGTCCTTACGCGTAGCGATCTTGGTGGAGCAATCATTGAAGGT
GCAGACTTCAGTGATGCTGTTATTGACCTGACACAGAAACAGGCTTTGTGCAAATATGCA
AATGGAACAAACCCTTTAACAGGGGTCAGCACACGGAAAAGCCTTGGATGCGGCAACAGT
CGCCGAAATGCATATGGGAGCCCTTCCTCCCCTCTTTTGAGTGCTCCACCACCCAAACTT
CTGGACCGTGATGGTTTCTGCGATGAAGCAACTGGTATGTGTGACGCAAAATAA

Peptide Sequence

PEP ID

Os02t0643500-01
PEP Infomation

pep chromosome:IRGSP-1.0:2:25855643:25859028:1 gene:Os02g0643500 transcript:Os02t0643500-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentapeptide repeat containing protein. (Os02t0643500-01)
Sequence

MALPTTSPLAAAAARPCAFPTPWRCRSPPLRRLPHVSCQANRGGSRDGNSLSTSAAAAAA
ASPPPRWRAAVSAALAAAIVSAAPAYADLNKFEAEQRGEFGIGSAAQFGSADLKKAVHVN
ENFRRANFTAADMRESNFSGSTFNGAYLEKAVAYRANFTGADLSDTLMDRMVLNEANLTN
AVLVRSVLTRSDLGGAIIEGADFSDAVIDLTQKQALCKYANGTNPLTGVSTRKSLGCGNS
RRNAYGSPSSPLLSAPPPKLLDRDGFCDEATGMCDAK

Transcript Sequence

Transcript ID

Os02t0643500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:25855643:25859028:1 gene:Os02g0643500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentapeptide repeat containing protein. (Os02t0643500-01)
Sequence

GCGCGCACACGCCCCCGCCATGGCTCTCCCCACCACCTCCCCCCTCGCCGCGGCCGCAGC
GAGGCCCTGCGCGTTCCCGACGCCGTGGAGATGTCGCTCGCCCCCTCTTCGCCGCCTCCC
GCACGTCTCCTGCCAGGCGAACCGAGGGGGTTCTCGGGACGGCAATTCGTTGAGCACCTC
GGCGGCGGCGGCGGCGGCGGCGTCGCCGCCGCCGAGGTGGCGTGCCGCGGTGTCCGCGGC
GCTCGCGGCGGCGATTGTGTCCGCGGCGCCGGCCTACGCGGATCTTAACAAGTTCGAGGC
GGAGCAGCGTGGGGAGTTCGGCATTGGCTCCGCTGCGCAGTTTGGGTCGGCCGACCTCAA
GAAGGCCGTCCATGTTAATGAGAACTTCAGGCGGGCAAACTTCACTGCTGCTGATATGAG
GGAGTCAAATTTCAGTGGTTCCACATTCAATGGTGCCTATCTTGAAAAGGCTGTTGCTTA
TAGAGCAAATTTTACTGGTGCAGATTTGAGTGATACCTTGATGGATCGCATGGTGCTCAA
TGAAGCTAACCTTACAAATGCTGTGCTTGTACGGTCAGTCCTTACGCGTAGCGATCTTGG
TGGAGCAATCATTGAAGGTGCAGACTTCAGTGATGCTGTTATTGACCTGACACAGAAACA
GGCTTTGTGCAAATATGCAAATGGAACAAACCCTTTAACAGGGGTCAGCACACGGAAAAG
CCTTGGATGCGGCAACAGTCGCCGAAATGCATATGGGAGCCCTTCCTCCCCTCTTTTGAG
TGCTCCACCACCCAAACTTCTGGACCGTGATGGTTTCTGCGATGAAGCAACTGGTATGTG
TGACGCAAAATAAAAGAAGAATTATCCAGCATACTGCAGAAATTGAGCACTGAATGCTGT
ATATACATTGGAGACTGAACAAAAGACAAAGCAGATCGGTTCAGGATTCAGAGAAATTGT
TCTCGTTTTGCGAATGTTGTAGCATTGCAGAGAGATCAGGTAAACTAGGACTGTAGACAA
GTTATGTGTACTGAACGACTGATGCCGTATATATATGTATATCAAAGTGTTGCCGAATTC