Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os02t0639600-01
CDS Infomation	cds chromosome:IRGSP-1.0:2:25660296:25664328:1 gene:Os02g0639600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to MLD (Degenerative spermatocyte homolog 1, lipid desaturase) (Migration-inducing gene 15 protein) (Sphingolipid delta 4 desaturase protein DES1). (Os02t0639600-01)
Sequence	ATGGGCGCCGCGGCGGGGGATGGACGGGAGGAGGAAGGGGTGATGGCGACGGACTTCTTC TGGTCGTACACGGACGAGCCGCACGCGACGCGGCGCAGGGAGATCCTGGCCAAGCATCCC CAGATCAAGGAGCTCTTCGGCCCGGACCCGCTCGCCTTTCTCAAGATTGCTGCAGTTGTA TCACTTCAGCTATGGACTGCCACATTACTCCGAGATGCTAGTTGGGTGAAGATACTGACA GTTGCATATTTTTTTGGATCCTTTTTGAACCACAATCTCTTCCTTGCAATCCACGAGCTC AGTCACAATCTTGCGTTCACAACTCCGAGCTACAATCGCTGGCTAGGTATATTTGCTAAC CTTCCTATCGGTGTTCCCATGTCCATTACATTCCAGAAGTACCACTTGGAGCACCACCGT TTCCAAGGTGTTGATGGAATTGATATGGATATCCCCAGCCAAGCAGAGGCGCATGCTGTT AAGAATACTCTAAGCAAATCTGTATGGGTTGTCTTCCAGCTGTTCTTTTATGCCCTTAGA CCGCTGTTCCTCAAGCCAAAACCTCCTGGCCTGTGGGAATTCACCAATTTGATTATCCAG ATTGCGCTTGATGCCAGCATGGTGTACTTCTTTGGATGGAAATCACTAGCTTATCTGATA CTCTCAACATTTGTTGGTGGTGGCATGCATCCTATGGCTGGACATTTCATCTCAGAGCAC TACGTATTCAATCCAGACCAGGAGACTTATTCGTATTATGGACCTTTGAATCTGATGACA TGGCATGTTGGATACCACAATGAGCACCATGATTTCCCAAGAATTCCAGGAACAAGACTG TACAAGGTAAGGGAAATCGCACCAGAGTATTACAACAATCTGAAATCATACAAATCTTGG AGCCAGGTGATATACATGTACATCATGGACCAAACTGTTGGTCCTTTCAGCCGGATGAAG AGAAAGGCGCCGAAAAAAGATTCATAG

Peptide Sequence

PEP ID	Os02t0639600-01
PEP Infomation	pep chromosome:IRGSP-1.0:2:25660296:25664328:1 gene:Os02g0639600 transcript:Os02t0639600-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to MLD (Degenerative spermatocyte homolog 1, lipid desaturase) (Migration-inducing gene 15 protein) (Sphingolipid delta 4 desaturase protein DES1). (Os02t0639600-01)
Sequence	MGAAAGDGREEEGVMATDFFWSYTDEPHATRRREILAKHPQIKELFGPDPLAFLKIAAVV SLQLWTATLLRDASWVKILTVAYFFGSFLNHNLFLAIHELSHNLAFTTPSYNRWLGIFAN LPIGVPMSITFQKYHLEHHRFQGVDGIDMDIPSQAEAHAVKNTLSKSVWVVFQLFFYALR PLFLKPKPPGLWEFTNLIIQIALDASMVYFFGWKSLAYLILSTFVGGGMHPMAGHFISEH YVFNPDQETYSYYGPLNLMTWHVGYHNEHHDFPRIPGTRLYKVREIAPEYYNNLKSYKSW SQVIYMYIMDQTVGPFSRMKRKAPKKDS

Transcript Sequence

Transcript ID	Os02t0639600-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:2:25660296:25664328:1 gene:Os02g0639600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to MLD (Degenerative spermatocyte homolog 1, lipid desaturase) (Migration-inducing gene 15 protein) (Sphingolipid delta 4 desaturase protein DES1). (Os02t0639600-01)
Sequence	ACGTGCCAGGTGCGTGCGTGCGTGCGTCTCCTCCCCTTCCCTCCCCCCTCCCCCGCGACC CCGGAATAGCCGAACAGGAAACCTCCTCCCATCTCGGCAGGCGGCGGCGGCCCATCGTAT CGGGAAACCGGAGCCCCCCAGCCAGCCACCAAATCGACAAGACTCGTAGTCCCCCCCCTC GTGCGCTCCCCGTCCCGGCATTGCCGCCGCTGTCTCCGAGGAGTGGAGGTAGACGCGCCG CCGTTTGTCGATCGGATCCTTGCTTTTGCTTGCGGTTGCGGGCGGGGGTTTGGGGTGGCA ATGGGCGCCGCGGCGGGGGATGGACGGGAGGAGGAAGGGGTGATGGCGACGGACTTCTTC TGGTCGTACACGGACGAGCCGCACGCGACGCGGCGCAGGGAGATCCTGGCCAAGCATCCC CAGATCAAGGAGCTCTTCGGCCCGGACCCGCTCGCCTTTCTCAAGATTGCTGCAGTTGTA TCACTTCAGCTATGGACTGCCACATTACTCCGAGATGCTAGTTGGGTGAAGATACTGACA GTTGCATATTTTTTTGGATCCTTTTTGAACCACAATCTCTTCCTTGCAATCCACGAGCTC AGTCACAATCTTGCGTTCACAACTCCGAGCTACAATCGCTGGCTAGGTATATTTGCTAAC CTTCCTATCGGTGTTCCCATGTCCATTACATTCCAGAAGTACCACTTGGAGCACCACCGT TTCCAAGGTGTTGATGGAATTGATATGGATATCCCCAGCCAAGCAGAGGCGCATGCTGTT AAGAATACTCTAAGCAAATCTGTATGGGTTGTCTTCCAGCTGTTCTTTTATGCCCTTAGA CCGCTGTTCCTCAAGCCAAAACCTCCTGGCCTGTGGGAATTCACCAATTTGATTATCCAG ATTGCGCTTGATGCCAGCATGGTGTACTTCTTTGGATGGAAATCACTAGCTTATCTGATA CTCTCAACATTTGTTGGTGGTGGCATGCATCCTATGGCTGGACATTTCATCTCAGAGCAC TACGTATTCAATCCAGACCAGGAGACTTATTCGTATTATGGACCTTTGAATCTGATGACA TGGCATGTTGGATACCACAATGAGCACCATGATTTCCCAAGAATTCCAGGAACAAGACTG TACAAGGTAAGGGAAATCGCACCAGAGTATTACAACAATCTGAAATCATACAAATCTTGG AGCCAGGTGATATACATGTACATCATGGACCAAACTGTTGGTCCTTTCAGCCGGATGAAG AGAAAGGCGCCGAAAAAAGATTCATAGATTTATGCATTTAGATTGGTTTGTTTCAGATGA CATTTTCTGTGCGCATATGGTCATATATATGGTTGTTAGACATGGTCATGTGTGCTTGTA TGCAGTGGGATACAATACTCGATAAGTCGATATTTCTTTGTTAATTGTTACTGATTCATT TTGTTCCGTCCACACTAGAAGCAGCGTTTCAGTGTTACTGTAACTCATGAAACTGTAACC ATGGCACCGAATGAAAATTTTGTAGTATC