Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0621500-01
CDS Infomation

cds chromosome:IRGSP-1.0:2:24728393:24733113:-1 gene:Os02g0621500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os02t0621500-01)
Sequence

ATGGCCTCCGAGGACGGCTGCGGCGGCGGCAACCCGCCGGGGGACGCAGCGGCCGCGCCG
CCGGTGTGGAACGCCGCACCTGCGGCGGGAGCTGGCTGCGGCGATCTGGAGGAGGACCTC
CGGTTCCAGTGCTGCGTCTGCCTGGAGCTTCTGTACAAACCAGTTGTTATTGCATGTGGA
CATATGTCATGTTTCTGGTGCGTCCACAATGCTATGCATATCATCAGGGAGTCTCATTGT
GCTGTCTGTAGGCAGCCTTATAAACATTTTCCTAGTATCTGTCAACTCCTCCATCACTTG
CTTATAAAGCTTGAACCTGTGGAATACAAAAGAAGGGAAAAAGAGGTACTAGAGGATGAG
AAGCGTGTGGATACATATTCTCCACAAATCATTGAGTTTTTAAACTCCAAGAGCAACAAT
TGTGAAATTGATGGGGAGAATAGACCTGAAGAAAGTAATAGTCGACCTCCACAAGAAGTT
ACATCTGATGGCAACACTATCAATGGGCATCCGAAGAAAGTTAAGCTGGAGGACGTGTCA
TGTGCTCTTTGTAAGGAGCTGTTGTATCAACCTGCTGTTCTTAATTGTGGTCATGTGTAC
TGCATGTCCTGTTTGTCGTCCTTGGATGATGGTGCACTCAAATGCCAAGTTTGTGGAGGT
CTTCATCCAGGAGATTTTCCTAATGTTTGCTTGGATTTGGACCATTTTATCGAAGACTAT
TTTCCAGCAGAATATGACTTAAGACGAGAGAAGATTAAGCTTTTGAAGGGTGAATGCAAT
CAAGGATCATCTTCAGGTACTTCATGCATAAAAGAAGGCAGGGGTAGACCAACAAATAAG
GAAAACCGTGCACATCAGGATGATGACTTGTCAGATGTTCATATTGGGGTTGGATGCGAT
TCATGCGGGATGTATCCAATACGAGGGAAGAGGTACAAATGTAAGGACTGCACTGAATTA
ATTGGATTTGACCTCTGCGAAGAATGCTACAATACAAAATCGAAACTTCCAGGCCGGTTT
AATCAGCATCATACCCCTGACCACAGGATGGAACTTGATCATTCAGCACTCTTCAATAGG
TTGATGAGGCTACAAGGGATACACGAGGAGGGCCCAGGAGAGATAATCATAGAAGGTGCA
TTTGTTGCTCCTGACGCTGTGGTGCATATAATAGCAGATGATCATGAGGAAATCGAGGAT
AACGGTGAGGATGATCACTTGCTCTAG

Peptide Sequence

PEP ID

Os02t0621500-01
PEP Infomation

pep chromosome:IRGSP-1.0:2:24728393:24733113:-1 gene:Os02g0621500 transcript:Os02t0621500-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os02t0621500-01)
Sequence

MASEDGCGGGNPPGDAAAAPPVWNAAPAAGAGCGDLEEDLRFQCCVCLELLYKPVVIACG
HMSCFWCVHNAMHIIRESHCAVCRQPYKHFPSICQLLHHLLIKLEPVEYKRREKEVLEDE
KRVDTYSPQIIEFLNSKSNNCEIDGENRPEESNSRPPQEVTSDGNTINGHPKKVKLEDVS
CALCKELLYQPAVLNCGHVYCMSCLSSLDDGALKCQVCGGLHPGDFPNVCLDLDHFIEDY
FPAEYDLRREKIKLLKGECNQGSSSGTSCIKEGRGRPTNKENRAHQDDDLSDVHIGVGCD
SCGMYPIRGKRYKCKDCTELIGFDLCEECYNTKSKLPGRFNQHHTPDHRMELDHSALFNR
LMRLQGIHEEGPGEIIIEGAFVAPDAVVHIIADDHEEIEDNGEDDHLL

Transcript Sequence

Transcript ID

Os02t0621500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:24728393:24733113:-1 gene:Os02g0621500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os02t0621500-01)
Sequence

ATCGGCCCCGTACTCCCCCGTCCCGTTCCTTCGTTCCGATTCGGTCCTTCGCCTCCAAGG
CTCCAAGCCACCCGCGACCTCGAGCTTCCCTTCTCTCTCTCTCTCTCTCTCTTTCTCTCT
CGCGGCCTCGCGTCCGCCTGCCTCCTCGCGACACCGCCCGTTCCGTTCGAGGGGGGGCGA
AGCCGGGTGGGAGGGGGAAGAGGATGGCCTCCGAGGACGGCTGCGGCGGCGGCAACCCGC
CGGGGGACGCAGCGGCCGCGCCGCCGGTGTGGAACGCCGCACCTGCGGCGGGAGCTGGCT
GCGGCGATCTGGAGGAGGACCTCCGGTTCCAGTGCTGCGTCTGCCTGGAGCTTCTGTACA
AACCAGTTGTTATTGCATGTGGACATATGTCATGTTTCTGGTGCGTCCACAATGCTATGC
ATATCATCAGGGAGTCTCATTGTGCTGTCTGTAGGCAGCCTTATAAACATTTTCCTAGTA
TCTGTCAACTCCTCCATCACTTGCTTATAAAGCTTGAACCTGTGGAATACAAAAGAAGGG
AAAAAGAGGTACTAGAGGATGAGAAGCGTGTGGATACATATTCTCCACAAATCATTGAGT
TTTTAAACTCCAAGAGCAACAATTGTGAAATTGATGGGGAGAATAGACCTGAAGAAAGTA
ATAGTCGACCTCCACAAGAAGTTACATCTGATGGCAACACTATCAATGGGCATCCGAAGA
AAGTTAAGCTGGAGGACGTGTCATGTGCTCTTTGTAAGGAGCTGTTGTATCAACCTGCTG
TTCTTAATTGTGGTCATGTGTACTGCATGTCCTGTTTGTCGTCCTTGGATGATGGTGCAC
TCAAATGCCAAGTTTGTGGAGGTCTTCATCCAGGAGATTTTCCTAATGTTTGCTTGGATT
TGGACCATTTTATCGAAGACTATTTTCCAGCAGAATATGACTTAAGACGAGAGAAGATTA
AGCTTTTGAAGGGTGAATGCAATCAAGGATCATCTTCAGGTACTTCATGCATAAAAGAAG
GCAGGGGTAGACCAACAAATAAGGAAAACCGTGCACATCAGGATGATGACTTGTCAGATG
TTCATATTGGGGTTGGATGCGATTCATGCGGGATGTATCCAATACGAGGGAAGAGGTACA
AATGTAAGGACTGCACTGAATTAATTGGATTTGACCTCTGCGAAGAATGCTACAATACAA
AATCGAAACTTCCAGGCCGGTTTAATCAGCATCATACCCCTGACCACAGGATGGAACTTG
ATCATTCAGCACTCTTCAATAGGTTGATGAGGCTACAAGGGATACACGAGGAGGGCCCAG
GAGAGATAATCATAGAAGGTGCATTTGTTGCTCCTGACGCTGTGGTGCATATAATAGCAG
ATGATCATGAGGAAATCGAGGATAACGGTGAGGATGATCACTTGCTCTAGAAACGAATCA
GTGGTATTAAACCTGAATTTCGGCATTGTCCTTTCTTTAATGTGGAGGAGGCTACATGAA
TCATGAATGGTACTGTATGAAATGGAGGGATTGAACAAAGCTTGTAGGCGTGTAACGCCC
ATAGCCCCTTACTTCAATCTAATGGGAAACATCTTATTTCTGC