Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0620100-02
CDS Infomation

cds chromosome:IRGSP-1.0:2:24667290:24670741:1 gene:Os02g0620100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Mis12 family protein. (Os02t0620100-01);Mis12 family protein. (Os02t0620100-02)
Sequence

ATGGAGGAGAGCGACGAGACCGCCGTGGAGGCGGCGCTGGGGCTGAGCGCCTCGTTCTTC
GTCAACTCGGTCCTCAACGCGGTCGACGACGTCCGCTACGGGGCCTTCGAGTACTGCCTC
CAGGAAGGCGCCCCCGAGGCCGTCGGCGCCGCCATGGCGACCCAGAAGGCCGAGGAGCTG
GAGCGGGGTGTAATCAGCATTCACAACTTGGTGAAGGATGTATTGGATAAGAGAATGAGC
AATTGGGAGAAATACTGCCTTCGACATTGTTTCGCAATACCTGAAGGATTCCTGACACGT
GAAGATGATATTCCTGCAAAAAAATCACTCAATGATGGGAATTCTGATTCGGATCTCGAT
GCTGAACTTGTTTCTCTTAGGAAAAAACTTGAAGATGCTAACAATGAATCTGAAGAACTT
CAAAAAGAGCTTTCTTCCTTAGAAAGACAAGCTGAGTGCCAGAGAAATTTGGATTCCTCT
ATGGCTGAATTATTGAAGGTGTTTGAAAGCAAGGCCTTTCAAGACAATTTTCAAGATCTT
GTGAACGTAATACCACTATTTCAGCGGAAACTGGAAGGTATGAAAAGGAAGATTGTTGAG
AACATTGACGATCAAATTGATTGGAACGTCAATGGACACCACAAGCGGTTAGCATCAGGT
TTCACTGCCAGAACAGAAGACAGTCAAGATGTTGTGAATGTCTTAAAGAAGTATTAG

Peptide Sequence

PEP ID

Os02t0620100-02
PEP Infomation

pep chromosome:IRGSP-1.0:2:24667290:24670741:1 gene:Os02g0620100 transcript:Os02t0620100-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Mis12 family protein. (Os02t0620100-01);Mis12 family protein. (Os02t0620100-02)
Sequence

MEESDETAVEAALGLSASFFVNSVLNAVDDVRYGAFEYCLQEGAPEAVGAAMATQKAEEL
ERGVISIHNLVKDVLDKRMSNWEKYCLRHCFAIPEGFLTREDDIPAKKSLNDGNSDSDLD
AELVSLRKKLEDANNESEELQKELSSLERQAECQRNLDSSMAELLKVFESKAFQDNFQDL
VNVIPLFQRKLEGMKRKIVENIDDQIDWNVNGHHKRLASGFTARTEDSQDVVNVLKKY

Transcript Sequence

Transcript ID

Os02t0620100-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:24667290:24670741:1 gene:Os02g0620100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Mis12 family protein. (Os02t0620100-01);Mis12 family protein. (Os02t0620100-02)
Sequence

ACCCGTCGTCGGCGGCGACCGCGGGTGCCCAAGCCCAACCCCCCGCCGCCGCTCCCCTCG
CCGTCCGCCGACCCACACCACCACCACTCAGGACCCCCTCATACCAGGCATGGAGGAGAG
CGACGAGACCGCCGTGGAGGCGGCGCTGGGGCTGAGCGCCTCGTTCTTCGTCAACTCGGT
CCTCAACGCGGTCGACGACGTCCGCTACGGGGCCTTCGAGTACTGCCTCCAGGAAGGCGC
CCCCGAGGCCGTCGGCGCCGCCATGGCGACCCAGAAGGCCGAGGAGCTGGAGCGGGGTGT
AATCAGCATTCACAACTTGGTGAAGGATGTATTGGATAAGAGAATGAGCAATTGGGAGAA
ATACTGCCTTCGACATTGTTTCGCAATACCTGAAGGATTCCTGACACGTGAAGATGATAT
TCCTGCAAAAAAATCACTCAATGATGGGAATTCTGATTCGGATCTCGATGCTGAACTTGT
TTCTCTTAGGAAAAAACTTGAAGATGCTAACAATGAATCTGAAGAACTTCAAAAAGAGCT
TTCTTCCTTAGAAAGACAAGCTGAGTGCCAGAGAAATTTGGATTCCTCTATGGCTGAATT
ATTGAAGGTGTTTGAAAGCAAGGCCTTTCAAGACAATTTTCAAGATCTTGTGAACGTAAT
ACCACTATTTCAGCGGAAACTGGAAGGTATGAAAAGGAAGATTGTTGAGAACATTGACGA
TCAAATTGATTGGAACGTCAATGGACACCACAAGCGGTTAGCATCAGGTTTCACTGCCAG
AACAGAAGACAGTCAAGATGTTGTGAATGTCTTAAAGAAGTATTAGTAGCTCCCACTTTT
ATGCGACCTGTGCGATAACAGGACGCCTGCTATGTGCTATCCTTCGTAGCACGGGATAAG
CTGGTTATATGTTTGGACTCTTGCTAACTGAGTACCGCCAATGCAGATCTTCAATGTAAT
CCTGAACTGCGATTCCTTCCGAACAATTTGTACGTAAACGTAAAGTACATGGGCTTTC