Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0612000-01
CDS Infomation

cds chromosome:IRGSP-1.0:2:24090864:24094103:1 gene:Os02g0612000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to GrpE protein homolog. (Os02t0612000-01)
Sequence

CCAGCGAGCGACAGCGTGCAGCGGCCAAAGCCAAACTCCGCCCCCCTCCCTCCAATCCCC
CCTCACCCATGGCTGCTCTCCTCCGCACGGCCGCGGGTAGGAGCCACCGAGGCTGACGAG
GCCGCGCAGACGGCGACTGAGGAGGATTCTGAAACTGGAGAAACTGGTGCAGATGATGCC
GCTGCAGCCACAGAAGAAACTCCCTCTGTTATTGTCACAGCATTGCAATCATACAAGGAA
GCTTTGATTAATGATGATGAAACAAAAGTCGCTGAGATAGAGGACTTTTTATTCTCTATT
GAGGAGGAGAAAAATTCTCTTTTGAGCAAAATCAGTACCTTAGGTGCAGAATTGACAACT
GAGCGAGACCGTATCTTGAGGATAAGTGCTGACTTTGATAACTACAGGAAAAGGGTAGAA
AGAGAGAAGCTTTCGTTGATGACAAATGTGCAAGGGGAAGTTATAGAGAGCTTGCTGCCT
GTCCTCGACAACTTTGAAAGAGCAAAAACACAAATAAAGGTGGAAACTGAGCAAGAAACA
AAAATAAACGACAGCTATCAGAGCATTTATAAGCAATTTATTGATATTCTGAACTCACTA
GGAGTTGAAGATGTGGAGACTGTTGGCAAACCATTTGATCCTATGCTTCATGAGGCTATT
ATGAGAGAAGAATCAGTGGAGTATGAAGAAGGGGTCATCCTTCAGGAATTTCGTAAGGGT
TTTAAACTTGGGGAGAGATTATTGCGCCCTGCTATGGTCAAGGTGTCTGCAGGACCAGGC
CCTGAAAAACCCGTGTATGACGATCCTGCGATGGTTGAAGATAGTGTAGCACCTCAAAAG
GTCAAGGAGGCTGAAGATGATGGTTTTGATGATGATAATGCTGAGTGA

Peptide Sequence

PEP ID

Os02t0612000-01
PEP Infomation

pep chromosome:IRGSP-1.0:2:24090864:24094103:1 gene:Os02g0612000 transcript:Os02t0612000-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to GrpE protein homolog. (Os02t0612000-01)
Sequence

PASDSVQRPKPNSAPLPPIPPHPWLLSSARPRVGATEADEAAQTATEEDSETGETGADDA
AAATEETPSVIVTALQSYKEALINDDETKVAEIEDFLFSIEEEKNSLLSKISTLGAELTT
ERDRILRISADFDNYRKRVEREKLSLMTNVQGEVIESLLPVLDNFERAKTQIKVETEQET
KINDSYQSIYKQFIDILNSLGVEDVETVGKPFDPMLHEAIMREESVEYEEGVILQEFRKG
FKLGERLLRPAMVKVSAGPGPEKPVYDDPAMVEDSVAPQKVKEAEDDGFDDDNAE

Transcript Sequence

Transcript ID

Os02t0612000-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:24090864:24094103:1 gene:Os02g0612000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to GrpE protein homolog. (Os02t0612000-01)
Sequence

GACGATAGCCAGCGAGCGACAGCGTGCAGCGGCCAAAGCCAAACTCCGCCCCCCTCCCTC
CAATCCCCCCTCACCCATGGCTGCTCTCCTCCGCACGGCCGCGGGTAGGAGCCACCGAGG
CTGACGAGGCCGCGCAGACGGCGACTGAGGAGGATTCTGAAACTGGAGAAACTGGTGCAG
ATGATGCCGCTGCAGCCACAGAAGAAACTCCCTCTGTTATTGTCACAGCATTGCAATCAT
ACAAGGAAGCTTTGATTAATGATGATGAAACAAAAGTCGCTGAGATAGAGGACTTTTTAT
TCTCTATTGAGGAGGAGAAAAATTCTCTTTTGAGCAAAATCAGTACCTTAGGTGCAGAAT
TGACAACTGAGCGAGACCGTATCTTGAGGATAAGTGCTGACTTTGATAACTACAGGAAAA
GGGTAGAAAGAGAGAAGCTTTCGTTGATGACAAATGTGCAAGGGGAAGTTATAGAGAGCT
TGCTGCCTGTCCTCGACAACTTTGAAAGAGCAAAAACACAAATAAAGGTGGAAACTGAGC
AAGAAACAAAAATAAACGACAGCTATCAGAGCATTTATAAGCAATTTATTGATATTCTGA
ACTCACTAGGAGTTGAAGATGTGGAGACTGTTGGCAAACCATTTGATCCTATGCTTCATG
AGGCTATTATGAGAGAAGAATCAGTGGAGTATGAAGAAGGGGTCATCCTTCAGGAATTTC
GTAAGGGTTTTAAACTTGGGGAGAGATTATTGCGCCCTGCTATGGTCAAGGTGTCTGCAG
GACCAGGCCCTGAAAAACCCGTGTATGACGATCCTGCGATGGTTGAAGATAGTGTAGCAC
CTCAAAAGGTCAAGGAGGCTGAAGATGATGGTTTTGATGATGATAATGCTGAGTGATGGG
GCTTTATTTTTTATTTCACAGGAAAAGTCCAGAAATTTTGATGTTTTTCTGGAATGTGTC
AAGCAGGTAATAGGATAGAGTTAGAAATTTGACTCAAAATTTCCCCCTTCCTGCTGTTGA
CGCTGAGTGTTGATATTGCCTCAAAATTTCTGTTTC