Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0611800-01
CDS Infomation

cds chromosome:IRGSP-1.0:2:24080704:24084615:1 gene:Os02g0611800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HYDROXYCINNAMOYLTRANSFERASE 2 description:Similar to Hydroxyanthranilate hydroxycinnamoyltransferase 3. (Os02t0611800-01)
Sequence

ATGAAGATCAACGTGCGGGGGTCGACGATGGTGCGGCCGGCGGAGGAGACGCCGCGGGTG
AGGCTGTGGAACTCTAGCCTGGACCTGGTGGTGCCGCGGTTCCACACGCCGAGCGTCTAC
TTCTTCCGGCGCGGCGAGGCGGCGGCGGCGGAGGGCGGGAGCTACTTCGACGGGGAGAGG
ATGCGGCGGGCGCTGGCGGAGGCGCTGGTTCCGTTCTACCCGATGGCGGGGCGGCTGGCG
CACGACGAGGACGGCCGCGTGGAGATCGACTGCAACGGGGAAGGCGTGCTGTTCGTCGAG
GCCGACGCGCCGGGCGCCACCGTCGACGACTTCGGCGACTTCGCGCCCACCATGGACCTC
AAGCGCCTCATCCCCACCGTCGACTACACCGACGGCATCTCCTCCTTCCCCATCCTCGTG
CTCCAGGTGACCCACTTCAAGTGCGGAGGCGTCGCCCTCGGCGTGGGCATGCAGCACCAC
GTCGCCGACGGCTTCTCCGGCCTGCACTTCATCAACTCGTGGGCGGACCTCTGCCGCGGC
GTCCCGATCGCCGTCATGCCGTTCATCGACCGCACCCTCGTCCGCGCCCGCGACCCGCCG
GCGCCGTCGCACCCGCACGTCGAGTACCAGCCGGCGCCCGCCATGCTGGCCCCCGAGCCG
CCGCAGGCGCTGACCGCCAAGCCGGCGCCGCCGCCCACCGCCGTGGACATCTTCAAGCTG
TCCCGCTCCGACCTCGGCCGCCTCCGGTCCCAGCTGCCCCGCGGCGAGGGCGCGCCGCGG
TACAGCACGTACGCGGTGCTCGCGGCGCACGTGTGGCGGTGCGCGTCGCTGGCGCGGGGG
CTCCCCGCGGAGCAGCCCACCAAGCTGTACTGCGCCACGGACGGACGCCAGCGGCTGCAG
CCGTCGCTGCCCGACGGCTACTTCGGCAACGTGATCTTCACGGCGACGCCGCTCGCCGAG
GCCGGGAGGGTGACCGGGTCGCTGGCGGACGGCGCGGCGACGATCCAGTCGGCGCTGGAC
AGGATGGACAGCGGCTACTGCCGGTCGGCGCTGGACTACCTGGAGCTGCAGCCCGACCTG
TCGGCGCTGGTCCGCGGCGCGCACACGTTCCGGTGCCCCAACCTCGGCCTCACCAGCTGG
GTCCGACTGCCGATCCACGACGCCGACTTCGGCTGGGGGCGGCCGGTGTTCATGGGCCCC
GGCGGCATCGCGTACGAGGGGCTCGCCTTCGTGCTCCCCAGCGCCAGCGGCGACGGCAGC
CTGTCGGTGGCCATCTCGCTGCAGGCCGAGCACATGGAGAAGTTCCGCAAGATGATCTTC
GACTTCTGA

Peptide Sequence

PEP ID

Os02t0611800-01
PEP Infomation

pep chromosome:IRGSP-1.0:2:24080704:24084615:1 gene:Os02g0611800 transcript:Os02t0611800-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HYDROXYCINNAMOYLTRANSFERASE 2 description:Similar to Hydroxyanthranilate hydroxycinnamoyltransferase 3. (Os02t0611800-01)
Sequence

MKINVRGSTMVRPAEETPRVRLWNSSLDLVVPRFHTPSVYFFRRGEAAAAEGGSYFDGER
MRRALAEALVPFYPMAGRLAHDEDGRVEIDCNGEGVLFVEADAPGATVDDFGDFAPTMDL
KRLIPTVDYTDGISSFPILVLQVTHFKCGGVALGVGMQHHVADGFSGLHFINSWADLCRG
VPIAVMPFIDRTLVRARDPPAPSHPHVEYQPAPAMLAPEPPQALTAKPAPPPTAVDIFKL
SRSDLGRLRSQLPRGEGAPRYSTYAVLAAHVWRCASLARGLPAEQPTKLYCATDGRQRLQ
PSLPDGYFGNVIFTATPLAEAGRVTGSLADGAATIQSALDRMDSGYCRSALDYLELQPDL
SALVRGAHTFRCPNLGLTSWVRLPIHDADFGWGRPVFMGPGGIAYEGLAFVLPSASGDGS
LSVAISLQAEHMEKFRKMIFDF

Transcript Sequence

Transcript ID

Os02t0611800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:24080704:24084615:1 gene:Os02g0611800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HYDROXYCINNAMOYLTRANSFERASE 2 description:Similar to Hydroxyanthranilate hydroxycinnamoyltransferase 3. (Os02t0611800-01)
Sequence

AGCTCTCCCCCAAGAGCTGCTTACCTAACATACTTTTACAACTCCACCATTGTCCATTGC
CAAAGGCCTTCGATCTCGCCTCCCAGATCTGCCCCGCGTCGGCGAAGATGAAGATCAACG
TGCGGGGGTCGACGATGGTGCGGCCGGCGGAGGAGACGCCGCGGGTGAGGCTGTGGAACT
CTAGCCTGGACCTGGTGGTGCCGCGGTTCCACACGCCGAGCGTCTACTTCTTCCGGCGCG
GCGAGGCGGCGGCGGCGGAGGGCGGGAGCTACTTCGACGGGGAGAGGATGCGGCGGGCGC
TGGCGGAGGCGCTGGTTCCGTTCTACCCGATGGCGGGGCGGCTGGCGCACGACGAGGACG
GCCGCGTGGAGATCGACTGCAACGGGGAAGGCGTGCTGTTCGTCGAGGCCGACGCGCCGG
GCGCCACCGTCGACGACTTCGGCGACTTCGCGCCCACCATGGACCTCAAGCGCCTCATCC
CCACCGTCGACTACACCGACGGCATCTCCTCCTTCCCCATCCTCGTGCTCCAGGTGACCC
ACTTCAAGTGCGGAGGCGTCGCCCTCGGCGTGGGCATGCAGCACCACGTCGCCGACGGCT
TCTCCGGCCTGCACTTCATCAACTCGTGGGCGGACCTCTGCCGCGGCGTCCCGATCGCCG
TCATGCCGTTCATCGACCGCACCCTCGTCCGCGCCCGCGACCCGCCGGCGCCGTCGCACC
CGCACGTCGAGTACCAGCCGGCGCCCGCCATGCTGGCCCCCGAGCCGCCGCAGGCGCTGA
CCGCCAAGCCGGCGCCGCCGCCCACCGCCGTGGACATCTTCAAGCTGTCCCGCTCCGACC
TCGGCCGCCTCCGGTCCCAGCTGCCCCGCGGCGAGGGCGCGCCGCGGTACAGCACGTACG
CGGTGCTCGCGGCGCACGTGTGGCGGTGCGCGTCGCTGGCGCGGGGGCTCCCCGCGGAGC
AGCCCACCAAGCTGTACTGCGCCACGGACGGACGCCAGCGGCTGCAGCCGTCGCTGCCCG
ACGGCTACTTCGGCAACGTGATCTTCACGGCGACGCCGCTCGCCGAGGCCGGGAGGGTGA
CCGGGTCGCTGGCGGACGGCGCGGCGACGATCCAGTCGGCGCTGGACAGGATGGACAGCG
GCTACTGCCGGTCGGCGCTGGACTACCTGGAGCTGCAGCCCGACCTGTCGGCGCTGGTCC
GCGGCGCGCACACGTTCCGGTGCCCCAACCTCGGCCTCACCAGCTGGGTCCGACTGCCGA
TCCACGACGCCGACTTCGGCTGGGGGCGGCCGGTGTTCATGGGCCCCGGCGGCATCGCGT
ACGAGGGGCTCGCCTTCGTGCTCCCCAGCGCCAGCGGCGACGGCAGCCTGTCGGTGGCCA
TCTCGCTGCAGGCCGAGCACATGGAGAAGTTCCGCAAGATGATCTTCGACTTCTGATCCT
CTGAAATCAAACAACACGTACGTACGCACGCACGAACGCGCACATGCATGGAGAGGAGGC
GGGGTGGTTCTTAACACAGCCTATCATCGGTAGGATGCAGCAACGATTCTTTGATTCCAC
ACGTTAGTTCCTGCAAATTTTTCCCTTCCTGCCTTCCCGCTTTTGGGCAGGACACATTTT
GTGCCAACTGTATTTGTATTGTGAACAGTTAATTAATCCGTAAACATTACGAAACACAGA
GGGTTAATAAGGTTAATCACGGTGGTTTACTTCGCC