Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0605500-01
CDS Infomation

cds chromosome:IRGSP-1.0:2:23726254:23729125:-1 gene:Os02g0605500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, TRAF-type domain containing protein. (Os02t0605500-01)
Sequence

ATGGAGAACCTTGAATGCACAGTTGGGAAAGATGGCTTAAATTTTCAGTGCAACCTGTGT
GATTCAGATGTAGTGCATTCCATGGCAGAAATCCTGCTTCGTGGATTGGCAACTGCCTCA
GTTGACAGCACTACTGGTGATATCTTCAAGAGCCCATCTTCTGTAGCTGTTGGAATGAAG
AGCGAGCTAGCAGAATATTTGATTCAGGGGTCCATGACGCTTGTTCGTGAGGCTGTCGAC
GGAGGCGAGGATCACTCAGAACAATTAATAAAAGCATCCACCATGCCGACGGAGTTCCTC
TCAGACTTGATCGATGGTTTTGTAGCATCAAAACGGAACTTGTTGAGCCATGTGTCTGGG
TTTTTGTCTAGCGAAACCCGCTTGAACAAAATTAAAGACTTCATACAGAAGCTGGAGATG
GAGAACTTCTGGGCACCAGATGTTAGAGAGGCTACTGCAGGGACTATTCTTAAGAGTATA
GACATGAAATGCATTATCCATTGCCCTGAGAGATTTGACACACAAGATAAGCTGGCTGAA
CACAGGAATCTGTGTAGATTTAGGATAGTAAACTGCAAAAATGATGGATGTTTAGCTTCC
TTTTCTGCTAATCACATTGAGAAGCATGACTCTGTCTGCCCATTCAAAGTCCTACCATGT
GAGCAGTTGTGCGAGCAGCATGTTATGCGGTGTGAGATGGACAGGCATTGTGCATCAGTT
TGCCCTATGAAGCTTATTAACTGCCCTTTTTACCAGGTTGGCTGTGAATCAGCCTTTCCG
CAGTGTGTTCTTGATAAGCATTGTTCAGAGCGCCTTCAAATCCATCTGATGTATATTCTT
GAACTAACTACAAGACATGATGCTTTTGTTAATGATATGAATCAACGATTACACCTCCTT
GAGAAGGCCCAGTCACTGAATGAACTCTCTGGGGCTTTAGATAACAGAACCCTCACTCTA
ACAGCAAAGGAGCAAGAAGCAAAGATCAAGAAACTCGAACAGGATCTCAAAGTGCAAGAG
ACAAAGCTGAAGAAACTTGAAAGCGAGTTTAAGTCAGGGAAAGTGTGA

Peptide Sequence

PEP ID

Os02t0605500-01
PEP Infomation

pep chromosome:IRGSP-1.0:2:23726254:23729125:-1 gene:Os02g0605500 transcript:Os02t0605500-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, TRAF-type domain containing protein. (Os02t0605500-01)
Sequence

MENLECTVGKDGLNFQCNLCDSDVVHSMAEILLRGLATASVDSTTGDIFKSPSSVAVGMK
SELAEYLIQGSMTLVREAVDGGEDHSEQLIKASTMPTEFLSDLIDGFVASKRNLLSHVSG
FLSSETRLNKIKDFIQKLEMENFWAPDVREATAGTILKSIDMKCIIHCPERFDTQDKLAE
HRNLCRFRIVNCKNDGCLASFSANHIEKHDSVCPFKVLPCEQLCEQHVMRCEMDRHCASV
CPMKLINCPFYQVGCESAFPQCVLDKHCSERLQIHLMYILELTTRHDAFVNDMNQRLHLL
EKAQSLNELSGALDNRTLTLTAKEQEAKIKKLEQDLKVQETKLKKLESEFKSGKV

Transcript Sequence

Transcript ID

Os02t0605500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:23726254:23729125:-1 gene:Os02g0605500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, TRAF-type domain containing protein. (Os02t0605500-01)
Sequence

GATGACCTGTTCTTTCCTTCCTCCTCTTCTCGTGGGCCTTCTTCTCTCTCCCCCTCCCCG
TGGCGCTGACGCGACGCGCTCTCCTCCGGCGAGGTCTCTGACTCTCCAGCGCTGCGCGGC
GCCGTATCGCCGGCCGCGAACTCGAGGCTGGGCTGGGCGGGCGTATCGTTCCTGCTCCCG
GAGAAGACTGTTATGATGATTTGAACTACTGCTTGGTATTACAATGGAGAACCTTGAATG
CACAGTTGGGAAAGATGGCTTAAATTTTCAGTGCAACCTGTGTGATTCAGATGTAGTGCA
TTCCATGGCAGAAATCCTGCTTCGTGGATTGGCAACTGCCTCAGTTGACAGCACTACTGG
TGATATCTTCAAGAGCCCATCTTCTGTAGCTGTTGGAATGAAGAGCGAGCTAGCAGAATA
TTTGATTCAGGGGTCCATGACGCTTGTTCGTGAGGCTGTCGACGGAGGCGAGGATCACTC
AGAACAATTAATAAAAGCATCCACCATGCCGACGGAGTTCCTCTCAGACTTGATCGATGG
TTTTGTAGCATCAAAACGGAACTTGTTGAGCCATGTGTCTGGGTTTTTGTCTAGCGAAAC
CCGCTTGAACAAAATTAAAGACTTCATACAGAAGCTGGAGATGGAGAACTTCTGGGCACC
AGATGTTAGAGAGGCTACTGCAGGGACTATTCTTAAGAGTATAGACATGAAATGCATTAT
CCATTGCCCTGAGAGATTTGACACACAAGATAAGCTGGCTGAACACAGGAATCTGTGTAG
ATTTAGGATAGTAAACTGCAAAAATGATGGATGTTTAGCTTCCTTTTCTGCTAATCACAT
TGAGAAGCATGACTCTGTCTGCCCATTCAAAGTCCTACCATGTGAGCAGTTGTGCGAGCA
GCATGTTATGCGGTGTGAGATGGACAGGCATTGTGCATCAGTTTGCCCTATGAAGCTTAT
TAACTGCCCTTTTTACCAGGTTGGCTGTGAATCAGCCTTTCCGCAGTGTGTTCTTGATAA
GCATTGTTCAGAGCGCCTTCAAATCCATCTGATGTATATTCTTGAACTAACTACAAGACA
TGATGCTTTTGTTAATGATATGAATCAACGATTACACCTCCTTGAGAAGGCCCAGTCACT
GAATGAACTCTCTGGGGCTTTAGATAACAGAACCCTCACTCTAACAGCAAAGGAGCAAGA
AGCAAAGATCAAGAAACTCGAACAGGATCTCAAAGTGCAAGAGACAAAGCTGAAGAAACT
TGAAAGCGAGTTTAAGTCAGGGAAAGTGTGAATACATCCTTCGGCCATCCCGGCTAAAAA
GAAGTGTGAATGCGTGATGTTGTGATTATAGTGTTACTGTAAAAAACCAGGGCGTCATAC
TTTAGTAGCTGTAAATAATAATTAGCACCTCCTTACAGTTTACCATACTTCTGTGTGTTG
TTCATGTACGATAAGAAAATAAGGTTTAGAAAAGTCAGCTTCTCTTGAATTCTTTTGTTA
GTTTGAAGTAACAGTGTTTGATCTTTTCTGTATCATGCAGTAAGTACATATATATTGTGG
AGATGAAGTTCATTTGGATC