Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os02t0592300-02
CDS Infomation	cds chromosome:IRGSP-1.0:2:22917835:22924459:-1 gene:Os02g0592300 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:mismatch repair protein OsPMS1 description:Similar to predicted protein. (Os02t0592300-01);Similar to PMS5 protein (HPMS5 protein) (Fragment). (Os02t0592300-02)
Sequence	ATGGCCGGCGGCTCGTCGCCGGCGATACGGCCGATCGGCAAGTCGGCGGTGCACCGGATC TGCTCCGGCCAGGTCATCTTCGACCTCTCCTCCGCCGTCAAGGAGCTCGTCGAGAACAGC CTCGACGCCGGCGCCACCACCGTCGAGGTCACCCTCCGCTCCTACGGCGAGGACTCCTTC ACCGTCGCCGACAACGGCACCGGCATCTCCCCCACCAATTTCCAGGCGCTCGCTCTGAAG CACCACACCTCCAAGATCTCGGACTTCGGCGACCTCGCCTCCGTCGCCACCTTCGGGTTC CGCGGGGAGGCGCTCAGCTCGCTCTGCGCGCTGGGGAAGCTGACGGTCGAGACGAGGACC AAGGACGAGCCCGTCGGGACGCGCCTGGAGTTCGCGCACTCGGGCGTGGTGACCGGCGAG AGGAAGATGGCGCGGCCGGTCGGGACCGCCGTGACCGTCGAGAAGCTGTTCTCCACGCTG CCGGTCCGGAGCAAGGAGTTCAGCAGGAACATTCGGAAGGAGTACGGGAAAGTGATCTCC TTGCTGAATGCCTATGCGTTGATTGCCAAAGGGGTCAGATTAGTTTGCACAAATACTGTT GGCAAGAATTCTAAATCGGCGGTGCTTAGGACTCAAGGGAGCAGTTCACTGAAAGATAAT ATCATTACCGTATTTGGTCTGAACACTTTCAAGTGCCTGCAGCCCTTCAATGTGACAATC TCAGAAGGCTGCCAAGTTGATGGCTTTCTTTCCAAACCTGGACCTGGTAGTGGTCGCAAT TCAGGGGATAGACAGTTCTTCTATGTTAATGGCAGACCTGTGGATATGCCAAAGGTTTCC AAACTTGTCAATGAGCTGTACAGAAGCTCAAATGCCAAGCAATACCCTGTGGCTGTATTG AATTTCTGTATTCCAACCACATCTTATGATGTGAATGTTGCGCCTGATAAGAGAAAAATT TTCTTCTCATCTGAGCATGCCATTTTGCTATCTTTACGGGAAGGTATTGAGAATCTGTAC TGCCCTCAACAATGCAGTTTCTCCATCAACAGCGTTGAAGATCCTGGGAAGGAAATGGAC CCAGCCATCGATGGGTCTGATGAAGACATGTGTTTAACAGAAAAGGAGAATGTTTCAGCT CCTGAAAATGACGATGACATGGATGAAACAGATAGTGATGATGAGGTTACACCAGAGAAT CAGAAAGTGCCTTCTTCAGTGACAACAAGGGTAGCCACTGGATCTACACCCAAAGATGTG AGCCCCTTGTCAAGAGGCCCACCTGCTCAGCTTGATAGATCTACTTTGCTTTCAGCCTAC CGGTATGAACAACGAGAAAAGACGCCTACACGAGTAAAAAGTTATCCAGCACAAGCAAAT CATGTTAGAACAGGGCTTGCTGCAAAGTCTTCTCCTTCAAGTGCTGTTCAACCTTCTATT ATGAAATTTCTATCACAAAATAAAAGGAAACACGAAGACAGTTGCAATCTTATTTCTGAA GCTCCAGTGCTGAGAAGGGGAACATGCTTGGAGCAAGTGAGGAGAACAGATTTAGGAGTG AATTCACCAACTGCACTAACCTCAAGAGTATCTAATATTCCAGAGGTTAATGCACCTCAA GGAACAAATCCTTTGCGGCACCATTCCCTGCAATCTTTTGTACCTGAGATGCCAGAAGAT TCACCACAGCATTCTGAACCACCTAATATTGTTTCTCATCGTGATGAAGTGCCTCAGTTG CGTCCATGTGATGTTCACGCTACAGAATCTGAAGTGGATAACCAGCATGATCCATGCCAT TCCAAGTTTGGTGCTCCCAGTCGATGTTCAGAAGTGGAACCCCAAAATAAACTGACAAAT ATTTCCTTGCCTGATGCTCATTATGATGGTCATGACACTGCAGCACATTCTGGACAATCA TCTTATCCAGTTATGCAATTTACACTTGCTGATCTTAGAAGAAGAAGAAGGCATAGTTTT ATGATATCACATGCAAAAAAAGGAAGTTTTCCTGAGAAATCAACAAGGTGTTATAAAGCT GCGACACTGGATAACTATGTACCAGATAACGAGGAGGGAAAATCGAATTCTTTAGCTGCA GCCACCAGCGAGTTAGATAAGCTTTTCAGTAAAGATGACTTTGGAGAAATGGAGGTTGTT GGGCAGTTTAATCTTGGTTTTATCATTGGAAAGCTGGACCAGGACCTATTTATTGTTGAT CAGCATGCTGCTGATGAGAAGTACAACTTTGAGAACCTTTCACAGTCAACAACTTTAAAC ATACAGCCTCTCCTTCAACCACTGAGACTTGACCTATCACCAGAGGAAGAAGTTATCGTT TCTATGAACATGAGCACTATCAGAAAGAACGGTTTTGTTTTAGCAGAAGATCTGCATGCT TCACCTTGCAACCGCTATTTTATAAAAGCCGTTCCCTTCAGCAAGAATATTACATTTGGT GCTCAAGATGTGAAGGAGTTAATCTCCATGCTTGCTGACAGTCAAGGTGACTGTTCAATA ATCAGCAGTTACAAGCTCGACAGAACTGATTCTATTTGTCCTTCAAGGGTTCGTGCTATG TTGGCTTCGAGGGCTTGCCGAATGTCTACCATGATAGGTGATCCATTGACAAAAACTGAG ATGAAGAAGATACTTAAGAATTTGACAGGATTGAGGTCCCCTTGGAATTGCCCTCATGGG AGGCCAACAATGCGCCATCTAGCAGATCTCCATGCTATAAAAACTGAAGGATCGAAGGCA ACTTTCTCATGA

Peptide Sequence

PEP ID	Os02t0592300-02
PEP Infomation	pep chromosome:IRGSP-1.0:2:22917835:22924459:-1 gene:Os02g0592300 transcript:Os02t0592300-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:mismatch repair protein OsPMS1 description:Similar to predicted protein. (Os02t0592300-01);Similar to PMS5 protein (HPMS5 protein) (Fragment). (Os02t0592300-02)
Sequence	MAGGSSPAIRPIGKSAVHRICSGQVIFDLSSAVKELVENSLDAGATTVEVTLRSYGEDSF TVADNGTGISPTNFQALALKHHTSKISDFGDLASVATFGFRGEALSSLCALGKLTVETRT KDEPVGTRLEFAHSGVVTGERKMARPVGTAVTVEKLFSTLPVRSKEFSRNIRKEYGKVIS LLNAYALIAKGVRLVCTNTVGKNSKSAVLRTQGSSSLKDNIITVFGLNTFKCLQPFNVTI SEGCQVDGFLSKPGPGSGRNSGDRQFFYVNGRPVDMPKVSKLVNELYRSSNAKQYPVAVL NFCIPTTSYDVNVAPDKRKIFFSSEHAILLSLREGIENLYCPQQCSFSINSVEDPGKEMD PAIDGSDEDMCLTEKENVSAPENDDDMDETDSDDEVTPENQKVPSSVTTRVATGSTPKDV SPLSRGPPAQLDRSTLLSAYRYEQREKTPTRVKSYPAQANHVRTGLAAKSSPSSAVQPSI MKFLSQNKRKHEDSCNLISEAPVLRRGTCLEQVRRTDLGVNSPTALTSRVSNIPEVNAPQ GTNPLRHHSLQSFVPEMPEDSPQHSEPPNIVSHRDEVPQLRPCDVHATESEVDNQHDPCH SKFGAPSRCSEVEPQNKLTNISLPDAHYDGHDTAAHSGQSSYPVMQFTLADLRRRRRHSF MISHAKKGSFPEKSTRCYKAATLDNYVPDNEEGKSNSLAAATSELDKLFSKDDFGEMEVV GQFNLGFIIGKLDQDLFIVDQHAADEKYNFENLSQSTTLNIQPLLQPLRLDLSPEEEVIV SMNMSTIRKNGFVLAEDLHASPCNRYFIKAVPFSKNITFGAQDVKELISMLADSQGDCSI ISSYKLDRTDSICPSRVRAMLASRACRMSTMIGDPLTKTEMKKILKNLTGLRSPWNCPHG RPTMRHLADLHAIKTEGSKATFS

Transcript Sequence

Transcript ID	Os02t0592300-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:2:22917835:22924459:-1 gene:Os02g0592300 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:mismatch repair protein OsPMS1 description:Similar to predicted protein. (Os02t0592300-01);Similar to PMS5 protein (HPMS5 protein) (Fragment). (Os02t0592300-02)
Sequence	GAAAGGGAAAAACCCCGCGCTGTGTAGGGTTTTAGGCGGGTCGAGGTGGAGGGGGGAGGA TGGCCGGCGGCTCGTCGCCGGCGATACGGCCGATCGGCAAGTCGGCGGTGCACCGGATCT GCTCCGGCCAGGTCATCTTCGACCTCTCCTCCGCCGTCAAGGAGCTCGTCGAGAACAGCC TCGACGCCGGCGCCACCACCGTCGAGGTCACCCTCCGCTCCTACGGCGAGGACTCCTTCA CCGTCGCCGACAACGGCACCGGCATCTCCCCCACCAATTTCCAGGCGCTCGCTCTGAAGC ACCACACCTCCAAGATCTCGGACTTCGGCGACCTCGCCTCCGTCGCCACCTTCGGGTTCC GCGGGGAGGCGCTCAGCTCGCTCTGCGCGCTGGGGAAGCTGACGGTCGAGACGAGGACCA AGGACGAGCCCGTCGGGACGCGCCTGGAGTTCGCGCACTCGGGCGTGGTGACCGGCGAGA GGAAGATGGCGCGGCCGGTCGGGACCGCCGTGACCGTCGAGAAGCTGTTCTCCACGCTGC CGGTCCGGAGCAAGGAGTTCAGCAGGAACATTCGGAAGGAGTACGGGAAAGTGATCTCCT TGCTGAATGCCTATGCGTTGATTGCCAAAGGGGTCAGATTAGTTTGCACAAATACTGTTG GCAAGAATTCTAAATCGGCGGTGCTTAGGACTCAAGGGAGCAGTTCACTGAAAGATAATA TCATTACCGTATTTGGTCTGAACACTTTCAAGTGCCTGCAGCCCTTCAATGTGACAATCT CAGAAGGCTGCCAAGTTGATGGCTTTCTTTCCAAACCTGGACCTGGTAGTGGTCGCAATT CAGGGGATAGACAGTTCTTCTATGTTAATGGCAGACCTGTGGATATGCCAAAGGTTTCCA AACTTGTCAATGAGCTGTACAGAAGCTCAAATGCCAAGCAATACCCTGTGGCTGTATTGA ATTTCTGTATTCCAACCACATCTTATGATGTGAATGTTGCGCCTGATAAGAGAAAAATTT TCTTCTCATCTGAGCATGCCATTTTGCTATCTTTACGGGAAGGTATTGAGAATCTGTACT GCCCTCAACAATGCAGTTTCTCCATCAACAGCGTTGAAGATCCTGGGAAGGAAATGGACC CAGCCATCGATGGGTCTGATGAAGACATGTGTTTAACAGAAAAGGAGAATGTTTCAGCTC CTGAAAATGACGATGACATGGATGAAACAGATAGTGATGATGAGGTTACACCAGAGAATC AGAAAGTGCCTTCTTCAGTGACAACAAGGGTAGCCACTGGATCTACACCCAAAGATGTGA GCCCCTTGTCAAGAGGCCCACCTGCTCAGCTTGATAGATCTACTTTGCTTTCAGCCTACC GGTATGAACAACGAGAAAAGACGCCTACACGAGTAAAAAGTTATCCAGCACAAGCAAATC ATGTTAGAACAGGGCTTGCTGCAAAGTCTTCTCCTTCAAGTGCTGTTCAACCTTCTATTA TGAAATTTCTATCACAAAATAAAAGGAAACACGAAGACAGTTGCAATCTTATTTCTGAAG CTCCAGTGCTGAGAAGGGGAACATGCTTGGAGCAAGTGAGGAGAACAGATTTAGGAGTGA ATTCACCAACTGCACTAACCTCAAGAGTATCTAATATTCCAGAGGTTAATGCACCTCAAG GAACAAATCCTTTGCGGCACCATTCCCTGCAATCTTTTGTACCTGAGATGCCAGAAGATT CACCACAGCATTCTGAACCACCTAATATTGTTTCTCATCGTGATGAAGTGCCTCAGTTGC GTCCATGTGATGTTCACGCTACAGAATCTGAAGTGGATAACCAGCATGATCCATGCCATT CCAAGTTTGGTGCTCCCAGTCGATGTTCAGAAGTGGAACCCCAAAATAAACTGACAAATA TTTCCTTGCCTGATGCTCATTATGATGGTCATGACACTGCAGCACATTCTGGACAATCAT CTTATCCAGTTATGCAATTTACACTTGCTGATCTTAGAAGAAGAAGAAGGCATAGTTTTA TGATATCACATGCAAAAAAAGGAAGTTTTCCTGAGAAATCAACAAGGTGTTATAAAGCTG CGACACTGGATAACTATGTACCAGATAACGAGGAGGGAAAATCGAATTCTTTAGCTGCAG CCACCAGCGAGTTAGATAAGCTTTTCAGTAAAGATGACTTTGGAGAAATGGAGGTTGTTG GGCAGTTTAATCTTGGTTTTATCATTGGAAAGCTGGACCAGGACCTATTTATTGTTGATC AGCATGCTGCTGATGAGAAGTACAACTTTGAGAACCTTTCACAGTCAACAACTTTAAACA TACAGCCTCTCCTTCAACCACTGAGACTTGACCTATCACCAGAGGAAGAAGTTATCGTTT CTATGAACATGAGCACTATCAGAAAGAACGGTTTTGTTTTAGCAGAAGATCTGCATGCTT CACCTTGCAACCGCTATTTTATAAAAGCCGTTCCCTTCAGCAAGAATATTACATTTGGTG CTCAAGATGTGAAGGAGTTAATCTCCATGCTTGCTGACAGTCAAGGTGACTGTTCAATAA TCAGCAGTTACAAGCTCGACAGAACTGATTCTATTTGTCCTTCAAGGGTTCGTGCTATGT TGGCTTCGAGGGCTTGCCGAATGTCTACCATGATAGGTGATCCATTGACAAAAACTGAGA TGAAGAAGATACTTAAGAATTTGACAGGATTGAGGTCCCCTTGGAATTGCCCTCATGGGA GGCCAACAATGCGCCATCTAGCAGATCTCCATGCTATAAAAACTGAAGGATCGAAGGCAA CTTTCTCATGATGTCTGGCAGAGTTTAGGTTGGGTTTATGATGGATGCTCTTGCCTTTGC GCTGCTACCATTCCAAGGAAATTAGGCGCTCCATGGCCAACATTCCTTGATGTGTATAGA TGCCAGTCTCTCCCACCTGTTTGAGAGCCTGTGTGACCTATTCGTGTACTAACTTACATA TGTGATACATACATGACATGCGTGATAGTGGAGAACCTTGTTTCTAAGCCTTCGAAATGG GATGCATCTCCTTGCCCACTAGAATCCTTTTGCTCGGAGACTAATGCCGGAAGCGAAATA CTCCAACACCTTTGCAAGGATGACGAGCAACAAAGGTGACATCAGGTTATCAGGGAAAGC TATCTGGGGAAACATAAACTGATGCATGTGCTTACCTTTATTGTGTGGTTAAAATCCAGA CAAGATGTAACTTAGGTACTTGTGTTGAAAATGCCTCGAGTTTCTGAGTTGTATGCAACA AAGCTCTTGGCTGTATTTAGTTGCAGGCTTGCATTTTTAACGCCTTACCTTATCTATAAA CAGTAGACACTTGCTCTCAGGGTATGGATTACCCTGTGCTATTTATATTATCTTTTTGAG CCTGGAACGGCTGGTAGATCATAG