Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0588300-01
CDS Infomation

cds chromosome:IRGSP-1.0:2:22666458:22671443:-1 gene:Os02g0588300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Fimbrin 1 (AtFIM1). (Os02t0588300-01)
Sequence

ATGTCTAGCTTCGTTGGGGTTCTTGTGTCAGATCCATGGCTTCAGAGCCAGTTCACCCAA
GTGCAGCTACGAACTCTAAAAACCAAATTTGTGTCCGTGAAGAAATCGGATGCGGATCAT
GTAGCTGTAAAAGATTTGCCACCGGTAATGGAGAAGCTTAGGGGCATCCATGAGGTTCTA
TCTGAGGAAGAGATTAGCACTTTTTTAGGCGAGTCTTATCCCGATATGAACCAAACAATA
GAGTTCGAGTCATTCCTCAGGGAGTACTTAAATCTTCAAGCAAAGGGGAGCAGCAAAACA
GGAGGCAAAAAGAAATTGAAGGGATCTGTGTCTTTTTTGAAGGCCTCAACAACTACTCTC
TTGCACGTCATTAATGAGTCTGAGAAAACATCTTATGTCAACCACATCAACAATTTCCTG
GGAGAGGATTCTTTCCTGAAGAATTTCTTACCTTTGGATCCATCCACAAATGATATATTT
AATCTTGTCCGGGATGGTGTTCTACTTTGCAAGTTGATCAATGTCGCTGTTCCGGGTACA
ATCGATGAGAGAGCAATCAATACAAAGAAGGACCCTAACCCGTGGGAGAGGAATGAGAAT
CACACCCTTTGTCTTAACTCTGCAAAGGCCATTGGCTGCACTGTTGTTAACATTGGCACA
CAGGACTTGATTGAAGCTAGACCTCATCTAGTTCTTGGTTTGTTATCCCAAATCATAAAG
ATACAACTGTTAGCTGATCTGAATTTAAAGAAGACACCTCAGTTGGCAGAGTTGGTGGCT
GATGATAATAGCAAGGAAGCAGAGGAGCTAGTCACATTAGCACCAGATAAGATGTTGCTC
AAATGGATGAACTTTCATCTTAAGAAAGCAGGGTACAAGAAAACTGTGACAAACTTCTCT
ACTGATGTTAAGGATGGCGAAGCATATGCTTACCTTCTCAACACCCTAGCTCCCGAACTT
AGCTCCACAACCATGATAGAAACTTCAGATCCTAATGAAAGGGCAAAGAAAGTTCTTGAA
ACTGCAGAAAAGCTCGAGTGTACTAGATATGTAACGTCTAAAGATATTGTGGAGGGTTCT
GCAAATCTCAACTTGGCTTTTGTTGCTCAAATATTCCACCACAGAAATGGCCTGTCAGAC
AACAATGTGGCTCCTGTTGTTCAAGACACTCCAGATGACGTTGAAGCAACCAGGGAAGAG
AGAGCATTTCGTTTGTGGATCAACAGCCTTGGAATTGCAACTTATGTTAACAATTTGTTT
GAGGATGTAAGGACTGGATGGGTCCTGTTAGAGGTTCTTGACAAAATTTCTCCAGGAATA
GTTAACTGGAAGCAAGCTTCTAAGCCACCAATCATTATGCCTTTTAGAAAGGTGGAGAAC
GGCAACCAGGTTATCGAAATCGGAAAGGAGTTAAAATTCTCTGTGGTTAACATTTCAGGA
AATGACATTGTTCAAGGAAATAAGAAGCTAATTCTAGCTTTCCTGTGGCAACTCATGAGG
ACTAGTATCCTACAATTGCTAAAAAACCTGAGAACCCATTCCAAAGACAAAGAGATAACC
GATGCTGATATTCTCATTTGGGCAAATAATAAGGTCAAGGAATCAGGCAAAACATCCTGT
ATTGAAAACTTCAAGGATAAAAGCATAGCAAATGGAGTTTTCTTCCTAGAGCTTCTCCAC
GCTGTTAACCACAGGCATGTTGACTTGAGCATGGTGAAGAAGGGGGAGGATGATGAAGAG
AAGAAATCAAATGCCACTTACACCATCAGTGTTGCTAGGAAGCTTGGGTGCACCCTCTTC
ATGTTGCCAGAGGACATAATGGAGGTGAATCCAAAGATGATCCTGGTTCTTACTGCAAGC
ATCATGTATTGGAGTCTGCAGAAACATGGACCTTACCAAGTCCCTGAACGAGTGCCACAG
GAGACCCTCGCAGAGGAAGAGGAGGAAGACGAGGAAGGAGACTTCGAGGAGGACGAGGAA
GAGGAAAGTATCGAAGATGGTGTCTCCAATCTGACAACTTGA

Peptide Sequence

PEP ID

Os02t0588300-01
PEP Infomation

pep chromosome:IRGSP-1.0:2:22666458:22671443:-1 gene:Os02g0588300 transcript:Os02t0588300-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Fimbrin 1 (AtFIM1). (Os02t0588300-01)
Sequence

MSSFVGVLVSDPWLQSQFTQVQLRTLKTKFVSVKKSDADHVAVKDLPPVMEKLRGIHEVL
SEEEISTFLGESYPDMNQTIEFESFLREYLNLQAKGSSKTGGKKKLKGSVSFLKASTTTL
LHVINESEKTSYVNHINNFLGEDSFLKNFLPLDPSTNDIFNLVRDGVLLCKLINVAVPGT
IDERAINTKKDPNPWERNENHTLCLNSAKAIGCTVVNIGTQDLIEARPHLVLGLLSQIIK
IQLLADLNLKKTPQLAELVADDNSKEAEELVTLAPDKMLLKWMNFHLKKAGYKKTVTNFS
TDVKDGEAYAYLLNTLAPELSSTTMIETSDPNERAKKVLETAEKLECTRYVTSKDIVEGS
ANLNLAFVAQIFHHRNGLSDNNVAPVVQDTPDDVEATREERAFRLWINSLGIATYVNNLF
EDVRTGWVLLEVLDKISPGIVNWKQASKPPIIMPFRKVENGNQVIEIGKELKFSVVNISG
NDIVQGNKKLILAFLWQLMRTSILQLLKNLRTHSKDKEITDADILIWANNKVKESGKTSC
IENFKDKSIANGVFFLELLHAVNHRHVDLSMVKKGEDDEEKKSNATYTISVARKLGCTLF
MLPEDIMEVNPKMILVLTASIMYWSLQKHGPYQVPERVPQETLAEEEEEDEEGDFEEDEE
EESIEDGVSNLTT

Transcript Sequence

Transcript ID

Os02t0588300-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:22666458:22671443:-1 gene:Os02g0588300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Fimbrin 1 (AtFIM1). (Os02t0588300-01)
Sequence

CCCCACCATTCTTGGGGTTTGCTCGGGAGCTGGAAGGAATGTGTATGGAGTGAATGATTT
CGAGAGCTGGGAGGAAGGAAGAGGAAGCGAAATCTGCCCCCATTTTCTTTTCTTGATAGA
AAGGTCTGCAAGAATTGAGGAATTTGTGTGAGAAATAATTAGGGACAAGAATACATTGAT
TTTGGAAGGCAATGTCTAGCTTCGTTGGGGTTCTTGTGTCAGATCCATGGCTTCAGAGCC
AGTTCACCCAAGTGCAGCTACGAACTCTAAAAACCAAATTTGTGTCCGTGAAGAAATCGG
ATGCGGATCATGTAGCTGTAAAAGATTTGCCACCGGTAATGGAGAAGCTTAGGGGCATCC
ATGAGGTTCTATCTGAGGAAGAGATTAGCACTTTTTTAGGCGAGTCTTATCCCGATATGA
ACCAAACAATAGAGTTCGAGTCATTCCTCAGGGAGTACTTAAATCTTCAAGCAAAGGGGA
GCAGCAAAACAGGAGGCAAAAAGAAATTGAAGGGATCTGTGTCTTTTTTGAAGGCCTCAA
CAACTACTCTCTTGCACGTCATTAATGAGTCTGAGAAAACATCTTATGTCAACCACATCA
ACAATTTCCTGGGAGAGGATTCTTTCCTGAAGAATTTCTTACCTTTGGATCCATCCACAA
ATGATATATTTAATCTTGTCCGGGATGGTGTTCTACTTTGCAAGTTGATCAATGTCGCTG
TTCCGGGTACAATCGATGAGAGAGCAATCAATACAAAGAAGGACCCTAACCCGTGGGAGA
GGAATGAGAATCACACCCTTTGTCTTAACTCTGCAAAGGCCATTGGCTGCACTGTTGTTA
ACATTGGCACACAGGACTTGATTGAAGCTAGACCTCATCTAGTTCTTGGTTTGTTATCCC
AAATCATAAAGATACAACTGTTAGCTGATCTGAATTTAAAGAAGACACCTCAGTTGGCAG
AGTTGGTGGCTGATGATAATAGCAAGGAAGCAGAGGAGCTAGTCACATTAGCACCAGATA
AGATGTTGCTCAAATGGATGAACTTTCATCTTAAGAAAGCAGGGTACAAGAAAACTGTGA
CAAACTTCTCTACTGATGTTAAGGATGGCGAAGCATATGCTTACCTTCTCAACACCCTAG
CTCCCGAACTTAGCTCCACAACCATGATAGAAACTTCAGATCCTAATGAAAGGGCAAAGA
AAGTTCTTGAAACTGCAGAAAAGCTCGAGTGTACTAGATATGTAACGTCTAAAGATATTG
TGGAGGGTTCTGCAAATCTCAACTTGGCTTTTGTTGCTCAAATATTCCACCACAGAAATG
GCCTGTCAGACAACAATGTGGCTCCTGTTGTTCAAGACACTCCAGATGACGTTGAAGCAA
CCAGGGAAGAGAGAGCATTTCGTTTGTGGATCAACAGCCTTGGAATTGCAACTTATGTTA
ACAATTTGTTTGAGGATGTAAGGACTGGATGGGTCCTGTTAGAGGTTCTTGACAAAATTT
CTCCAGGAATAGTTAACTGGAAGCAAGCTTCTAAGCCACCAATCATTATGCCTTTTAGAA
AGGTGGAGAACGGCAACCAGGTTATCGAAATCGGAAAGGAGTTAAAATTCTCTGTGGTTA
ACATTTCAGGAAATGACATTGTTCAAGGAAATAAGAAGCTAATTCTAGCTTTCCTGTGGC
AACTCATGAGGACTAGTATCCTACAATTGCTAAAAAACCTGAGAACCCATTCCAAAGACA
AAGAGATAACCGATGCTGATATTCTCATTTGGGCAAATAATAAGGTCAAGGAATCAGGCA
AAACATCCTGTATTGAAAACTTCAAGGATAAAAGCATAGCAAATGGAGTTTTCTTCCTAG
AGCTTCTCCACGCTGTTAACCACAGGCATGTTGACTTGAGCATGGTGAAGAAGGGGGAGG
ATGATGAAGAGAAGAAATCAAATGCCACTTACACCATCAGTGTTGCTAGGAAGCTTGGGT
GCACCCTCTTCATGTTGCCAGAGGACATAATGGAGGTGAATCCAAAGATGATCCTGGTTC
TTACTGCAAGCATCATGTATTGGAGTCTGCAGAAACATGGACCTTACCAAGTCCCTGAAC
GAGTGCCACAGGAGACCCTCGCAGAGGAAGAGGAGGAAGACGAGGAAGGAGACTTCGAGG
AGGACGAGGAAGAGGAAAGTATCGAAGATGGTGTCTCCAATCTGACAACTTGATGAGACT
GTAACAACTAACTTATGTGTACACTGTACACGGTAAAGAAATTGCCGGTTTAATTAATTG
CCGGTTTACTTGGGAAGCTGTTTGACAATGGCACGCTATCTTCAAAGAAGGAGGTTTTGG
TCT