Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0586800-01
CDS Infomation

cds chromosome:IRGSP-1.0:2:22617503:22620008:1 gene:Os02g0586800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tetratricopeptide-like helical domain containing protein. (Os02t0586800-01)
Sequence

ATGCCTGCGCGCGCGGCGGCGCTCTCCTGCCGCGGAGTCTCCCCGCACCCCCGCGCCCAC
TCCCTCCTCCCTGGCCGCCGCCGCCGCCCCGTCCTCCCCTTCGCCGATGAGGCGGCGGCG
GCGCCCCTACGTGTCAGCTCCGTGCCCCATTCTCGGGCTTACGGCTGCGGCGGCGGCGGT
TACTTCGTGCATCTCGAAGACCGCGATGACGGAGAGGCGTCTCGGTTGCTGCGTGCCCTT
CGGCGAGTCCTTCCCGATCACCAGAAATGGGCACAACCTGACCTTCTGAAAGCTGCTGTT
ATTTCAACCATGTCAATACTTGCTGTGCCTCTTGAGGCATCGGCATCGGCGGAGACATGT
CAGCCAGCTAATTCTATGGCCAATATGCCCATTTTTATTGCTGTGGCTCTAATAGGTGCT
GCTGTTGGTGGATTACTAGCACGGCAAAGAAAGGAGGAATTAAAGCGACTGAACACTCAA
CTTCGCCAAATTAACACGGCACTTAGAAGACAGGCGCAGATTGAGTCATTTGCTCCTGGC
CTTACTTACGCGCCAGTTGGCAGAGCAACAGAAACTGAAGTTATTGTAGATCCCAGGAAG
CAACAACTGACAGTAAATTTGAGAAACGGGAAGACATTTATGAGGAATCAAGATCTTGAT
ATGGCAGTAAAGGAATTCAGGGCAGCTCTGGAGCTCGCAAAGAGCGTAGGAGATCGCTTT
GAGGAGAAGAAAGCTGCTCGTGGATTAGGTGCATCGCTACAAAGATTGGGCAAATACAGA
GAAGCAATGAACTGCTACTATAAAGTCCTGGAGCTTTCCAAGGAAACGGGCGAGGATTCC
GGGTGCACCGAGGCCTACGGCGCCATAGCTGACTGCTACACGGAGCTTGGGGATCTAGAG
CGAGCGGCGAAGTTGTATGACAAGTACATATCAAGGTTGCAGCCCGGCGGTGGTGAGTAA

Peptide Sequence

PEP ID

Os02t0586800-01
PEP Infomation

pep chromosome:IRGSP-1.0:2:22617503:22620008:1 gene:Os02g0586800 transcript:Os02t0586800-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tetratricopeptide-like helical domain containing protein. (Os02t0586800-01)
Sequence

MPARAAALSCRGVSPHPRAHSLLPGRRRRPVLPFADEAAAAPLRVSSVPHSRAYGCGGGG
YFVHLEDRDDGEASRLLRALRRVLPDHQKWAQPDLLKAAVISTMSILAVPLEASASAETC
QPANSMANMPIFIAVALIGAAVGGLLARQRKEELKRLNTQLRQINTALRRQAQIESFAPG
LTYAPVGRATETEVIVDPRKQQLTVNLRNGKTFMRNQDLDMAVKEFRAALELAKSVGDRF
EEKKAARGLGASLQRLGKYREAMNCYYKVLELSKETGEDSGCTEAYGAIADCYTELGDLE
RAAKLYDKYISRLQPGGGE

Transcript Sequence

Transcript ID

Os02t0586800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:22617503:22620008:1 gene:Os02g0586800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tetratricopeptide-like helical domain containing protein. (Os02t0586800-01)
Sequence

CACTTCCATTCCACGCACGCGCACTTCACGTGACGAGACCATCGCCACCCCCCTCCGCCA
TCCTTCCCACCGCCGCCGCCAACGCCGACGCCGCCCGACGACCGAGCCAACGCGACCAGC
CAGCCGCCCATGCCTGCGCGCGCGGCGGCGCTCTCCTGCCGCGGAGTCTCCCCGCACCCC
CGCGCCCACTCCCTCCTCCCTGGCCGCCGCCGCCGCCCCGTCCTCCCCTTCGCCGATGAG
GCGGCGGCGGCGCCCCTACGTGTCAGCTCCGTGCCCCATTCTCGGGCTTACGGCTGCGGC
GGCGGCGGTTACTTCGTGCATCTCGAAGACCGCGATGACGGAGAGGCGTCTCGGTTGCTG
CGTGCCCTTCGGCGAGTCCTTCCCGATCACCAGAAATGGGCACAACCTGACCTTCTGAAA
GCTGCTGTTATTTCAACCATGTCAATACTTGCTGTGCCTCTTGAGGCATCGGCATCGGCG
GAGACATGTCAGCCAGCTAATTCTATGGCCAATATGCCCATTTTTATTGCTGTGGCTCTA
ATAGGTGCTGCTGTTGGTGGATTACTAGCACGGCAAAGAAAGGAGGAATTAAAGCGACTG
AACACTCAACTTCGCCAAATTAACACGGCACTTAGAAGACAGGCGCAGATTGAGTCATTT
GCTCCTGGCCTTACTTACGCGCCAGTTGGCAGAGCAACAGAAACTGAAGTTATTGTAGAT
CCCAGGAAGCAACAACTGACAGTAAATTTGAGAAACGGGAAGACATTTATGAGGAATCAA
GATCTTGATATGGCAGTAAAGGAATTCAGGGCAGCTCTGGAGCTCGCAAAGAGCGTAGGA
GATCGCTTTGAGGAGAAGAAAGCTGCTCGTGGATTAGGTGCATCGCTACAAAGATTGGGC
AAATACAGAGAAGCAATGAACTGCTACTATAAAGTCCTGGAGCTTTCCAAGGAAACGGGC
GAGGATTCCGGGTGCACCGAGGCCTACGGCGCCATAGCTGACTGCTACACGGAGCTTGGG
GATCTAGAGCGAGCGGCGAAGTTGTATGACAAGTACATATCAAGGTTGCAGCCCGGCGGT
GGTGAGTAAACGCTTGGGCTTTCCTGACCCAAACGATTTGGTTTCTTCCTGTTGCATGGT
TGATGTTCAGCAAAACAGTCAATTTGTTGGCCTCATTTTAGCTTTGTGGGAGCGCTTGAA
TCGCTCAAGGAAAAAAAGCTCAACTCTTGTATATAAATGTCAGTGGTGCGTGCTACTTGA
GATAACAATGGCAAAGCTTGGTCTGGTTTGCTGCCTGTTGCAAGCGGCAAGCACTGCGTA
CACACACGGTGCACGCATCTACTGATCTTCCTAAAATAACTCTGCCAAAGTTC