Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0580100-01
CDS Infomation

cds chromosome:IRGSP-1.0:2:22327308:22331805:-1 gene:Os02g0580100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF580 family protein. (Os02t0580100-01)
Sequence

ATGTCGTCGTCGGAGGGGGAGAGCGCGAACCCTAGCCCCTGCCCCGCGGGGCCTGCGGCG
GCGGCGGCGGTGGCTGGGGCGGCGGGGGTGGGGGTGGGGGCGGCGGCGTGGCCGAGGCGG
CGGTGCCGGGACGTGTTCTGGCTGGTGGTGTTCCTGCTCCACCTGCTCGTCTTCGGCGGG
GCGCTCGCGCTGACGGGGCTCAACCGCTTCGGCCAGGCGGACCGCTTCAACATCGACCGC
TTCACCAACCTCACCGCCGCGCCTCGCTTCGCCGGGTCGCCGGAGCCCGCTCGGGAGGCG
CCCCCGCCGCCGTCGCTCGAGGCCGAGGAGGTCACCCCCAAGTCCGAGCTCACGGAGTCG
TACTGGCCCTACTACGGCGCCGCGGGGGCCGTGGGGACCGCCCTCGCGTGGGCGTGGCTG
GCGGCGGCCGCGGGGAAGAAGGACGGGGGGAGGGTGGTCATGAGGGCCGCCGTGCACAGC
CTCACCGCCTACCTCGCGGTGGTCAGCGTGCTCTGCTTCTGGGGGAAGCACTTCTTCTGG
GGCGTGGCGTTCGCCGTCGGCGGAGCGCTGCACTTCCTCTACGTCATGTCAGTTCTTGAT
AGGTTCCCCTTCACAATGCTTGTATTGCAGAAGGCAGTAAGAATGGTATGGGAACTTCCT
GATGTGATGAGGATAGCATATGCATTTGTGTTAGTCATGCTTTGTTGGATGGCATTATGG
TCCTTTGGAGTGTCTGGCATTCTTGCTTTTCACATACCTAATGGAGGGCAATGGTGGGCT
CTTTTGATTTTCTCAGTCAGTTTATTTTGGACTGGAGCTGTCCTTAGTAACACAGTCCAT
GTCATAGTATCAGGGATGGTTTTTCTTGTTCTCATTCATGGTGGTCAAGCTGCTGCATCG
ATGCCCCCAAAACCACTTCTAAAATCACTTCAGTACGCTGTAACAACTTCATTTGGGAGC
ATTTGCTATGGATCACTTTTTACGGCTGCTATTAGGACTTTACGTTGGGAGATTCGAGGA
ATTCGTTCTAAAATAGGCAACAATGAGTGTTTGCTGTGCTGTGTTGACTTTTTGTTTCAT
ATCGTGGAAACTCTTGTTCGCTTCTTCAACAAATATGCATATGTACAGATAGCTATCAAT
GGCCAGAGTTTCAATCGCTCAGCTAGGGATGCTTGGGAGTTGTTCCAATCAACTGGCGTT
GAAGCACTTGTTGCTTATGACTGTTCAGGTGCTGTCCTTCTGATGAGCACCATTTTAGGT
GGGTTAATTACAGGAACATGTACGGGTGTTTGGACATATTTTAAACAAAGTGATAAAGCT
ATTATGGTTGGCTCAACCTCTATGCTGATGGGCATGATACTGGTTGGGGTAACTGTTGTA
GTTGTCGAAAGTGCAGTTACATCGATATACATATGCTATGCTGAGGATCCCCGTTTAATT
CAGAGATGGGATCCTGATTTTTTTGATCAAATGTCAGAAGCACTACACCAGCGACTGCAA
TACCGAAGTGCGCGAGCTCACCAAATACTGAACAGCCGGCTTGATCAGTTGCCAAATACC
TCGAGTATTTGA

Peptide Sequence

PEP ID

Os02t0580100-01
PEP Infomation

pep chromosome:IRGSP-1.0:2:22327308:22331805:-1 gene:Os02g0580100 transcript:Os02t0580100-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF580 family protein. (Os02t0580100-01)
Sequence

MSSSEGESANPSPCPAGPAAAAAVAGAAGVGVGAAAWPRRRCRDVFWLVVFLLHLLVFGG
ALALTGLNRFGQADRFNIDRFTNLTAAPRFAGSPEPAREAPPPPSLEAEEVTPKSELTES
YWPYYGAAGAVGTALAWAWLAAAAGKKDGGRVVMRAAVHSLTAYLAVVSVLCFWGKHFFW
GVAFAVGGALHFLYVMSVLDRFPFTMLVLQKAVRMVWELPDVMRIAYAFVLVMLCWMALW
SFGVSGILAFHIPNGGQWWALLIFSVSLFWTGAVLSNTVHVIVSGMVFLVLIHGGQAAAS
MPPKPLLKSLQYAVTTSFGSICYGSLFTAAIRTLRWEIRGIRSKIGNNECLLCCVDFLFH
IVETLVRFFNKYAYVQIAINGQSFNRSARDAWELFQSTGVEALVAYDCSGAVLLMSTILG
GLITGTCTGVWTYFKQSDKAIMVGSTSMLMGMILVGVTVVVVESAVTSIYICYAEDPRLI
QRWDPDFFDQMSEALHQRLQYRSARAHQILNSRLDQLPNTSSI

Transcript Sequence

Transcript ID

Os02t0580100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:22327308:22331805:-1 gene:Os02g0580100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF580 family protein. (Os02t0580100-01)
Sequence

GCAGTTACTCCTCCTCCCCATCCTCTTCTTCTCCTCCAAGTCATCCCCTCCGCTTCCGGC
CTCCTCCCCGCGATCCGCTCGCGGCTGATCCCTCGCTCCGGTGCGGTGCGGTGCGGTCCC
CGCTGCTGCTGATCTCCGGCGGGGCGGGGCGGGGAGCGATGTCGTCGTCGGAGGGGGAGA
GCGCGAACCCTAGCCCCTGCCCCGCGGGGCCTGCGGCGGCGGCGGCGGTGGCTGGGGCGG
CGGGGGTGGGGGTGGGGGCGGCGGCGTGGCCGAGGCGGCGGTGCCGGGACGTGTTCTGGC
TGGTGGTGTTCCTGCTCCACCTGCTCGTCTTCGGCGGGGCGCTCGCGCTGACGGGGCTCA
ACCGCTTCGGCCAGGCGGACCGCTTCAACATCGACCGCTTCACCAACCTCACCGCCGCGC
CTCGCTTCGCCGGGTCGCCGGAGCCCGCTCGGGAGGCGCCCCCGCCGCCGTCGCTCGAGG
CCGAGGAGGTCACCCCCAAGTCCGAGCTCACGGAGTCGTACTGGCCCTACTACGGCGCCG
CGGGGGCCGTGGGGACCGCCCTCGCGTGGGCGTGGCTGGCGGCGGCCGCGGGGAAGAAGG
ACGGGGGGAGGGTGGTCATGAGGGCCGCCGTGCACAGCCTCACCGCCTACCTCGCGGTGG
TCAGCGTGCTCTGCTTCTGGGGGAAGCACTTCTTCTGGGGCGTGGCGTTCGCCGTCGGCG
GAGCGCTGCACTTCCTCTACGTCATGTCAGTTCTTGATAGGTTCCCCTTCACAATGCTTG
TATTGCAGAAGGCAGTAAGAATGGTATGGGAACTTCCTGATGTGATGAGGATAGCATATG
CATTTGTGTTAGTCATGCTTTGTTGGATGGCATTATGGTCCTTTGGAGTGTCTGGCATTC
TTGCTTTTCACATACCTAATGGAGGGCAATGGTGGGCTCTTTTGATTTTCTCAGTCAGTT
TATTTTGGACTGGAGCTGTCCTTAGTAACACAGTCCATGTCATAGTATCAGGGATGGTTT
TTCTTGTTCTCATTCATGGTGGTCAAGCTGCTGCATCGATGCCCCCAAAACCACTTCTAA
AATCACTTCAGTACGCTGTAACAACTTCATTTGGGAGCATTTGCTATGGATCACTTTTTA
CGGCTGCTATTAGGACTTTACGTTGGGAGATTCGAGGAATTCGTTCTAAAATAGGCAACA
ATGAGTGTTTGCTGTGCTGTGTTGACTTTTTGTTTCATATCGTGGAAACTCTTGTTCGCT
TCTTCAACAAATATGCATATGTACAGATAGCTATCAATGGCCAGAGTTTCAATCGCTCAG
CTAGGGATGCTTGGGAGTTGTTCCAATCAACTGGCGTTGAAGCACTTGTTGCTTATGACT
GTTCAGGTGCTGTCCTTCTGATGAGCACCATTTTAGGTGGGTTAATTACAGGAACATGTA
CGGGTGTTTGGACATATTTTAAACAAAGTGATAAAGCTATTATGGTTGGCTCAACCTCTA
TGCTGATGGGCATGATACTGGTTGGGGTAACTGTTGTAGTTGTCGAAAGTGCAGTTACAT
CGATATACATATGCTATGCTGAGGATCCCCGTTTAATTCAGAGATGGGATCCTGATTTTT
TTGATCAAATGTCAGAAGCACTACACCAGCGACTGCAATACCGAAGTGCGCGAGCTCACC
AAATACTGAACAGCCGGCTTGATCAGTTGCCAAATACCTCGAGTATTTGAATTGCATGTT
AAATATTTGACCATTTTTGTCGGTCCATCGAAAGTGCTGCTGCAATTTCCAGAACAAAAA
AGTTCTGGAACTTCCTGCGGTCTAAATATTGATCTACGGAACCTTTCAGCCTCTGAAATA
TAGAAGAATGAAGTGCCCCAGCAATCATGGTGGCCTTCAAAACAACACGATGTTGCCAAT
CAAGCAGCCATATGTTCATAGTTGGGTAGAACTGCAATGCTGGCCTTTCTTTGATCTGTA
TGTATGCAGCTTTGTAGGGAAAACAGTAAAGAAAATCTTAGTCCAGTTGTTGACTTAGGT
CTTTTGTAACTGACTGAGCCTGCTGCCAGCCTCGTGAATGGAAACATTTCTTC