Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0579600-00
CDS Infomation

cds chromosome:IRGSP-1.0:2:22294657:22301807:1 gene:Os02g0579600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:MADS BOX GENE 27 description:Transcription factor MADS27. (Os02t0579600-00)
Sequence

ATGGGGAGGGGGAAGATTGTGATCCGCCGGATCGACAACTCGACGAGCCGGCAGGTGACG
TTCTCGAAGCGGAGGAACGGGATCTTCAAGAAGGCCAAGGAGCTGGCCATCCTCTGCGAC
GCCGAGGTCGGCCTCATGATCTTCTCCAGCACCGGCCGCCTCTACGAGTACTCCAGCACC
AGCATGAAGTCAGTTATAGATCGGTATGGCAAGTCCAAGGATGAGCAGCAAGCCGTCGCA
AATCCCAACTCGGAGCTTAAGTTTTGGCAAAGGGAGGCAGCAAGCTTGAGACAACAACTG
CACAACTTGCAAGAAAATCATCGGCAGTTGATGGGCGAAGATCTATCTGGGCTGAATGTT
AAGGAATTGCAATCTCTAGAGAATCAGCTGGAAATAAGTCTACGTAGTGTCCGTACAAAG
AAGGACCACGTCTTGATTGATGAAATTCATGAACTGAATCGGAAGGGAAGTCTAGTTCAC
CAAGAAAACATGGAATTATACAAGAAGATCAGTTTAATTCGTCAAGAAAATGCTGAGTTA
TATAAGAAGATCTACGAGACTGAAGGACCAAGTGAAGTCAATCGGGATTCACCAACTCCT
TACAATTTTGCAGTAATTGAAAAAACAAATGTTCCTGTGCAACTTGGACTCAGCACACTA
CCACAACATAGTGACGCCGAACAATCAACTGCTCCTAAGCTAGGGTTACAGTTGAATCCA
TGA

Peptide Sequence

PEP ID

Os02t0579600-00
PEP Infomation

pep chromosome:IRGSP-1.0:2:22294657:22301807:1 gene:Os02g0579600 transcript:Os02t0579600-00 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:MADS BOX GENE 27 description:Transcription factor MADS27. (Os02t0579600-00)
Sequence

MGRGKIVIRRIDNSTSRQVTFSKRRNGIFKKAKELAILCDAEVGLMIFSSTGRLYEYSST
SMKSVIDRYGKSKDEQQAVANPNSELKFWQREAASLRQQLHNLQENHRQLMGEDLSGLNV
KELQSLENQLEISLRSVRTKKDHVLIDEIHELNRKGSLVHQENMELYKKISLIRQENAEL
YKKIYETEGPSEVNRDSPTPYNFAVIEKTNVPVQLGLSTLPQHSDAEQSTAPKLGLQLNP

Transcript Sequence

Transcript ID

Os02t0579600-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:22294657:22301807:1 gene:Os02g0579600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:MADS BOX GENE 27 description:Transcription factor MADS27. (Os02t0579600-00)
Sequence

CCAAACCACAATTAATCCCATCAAATTCCCCTATAAGCTTTGGCCTCTTTGCAGCTTTCT
TCTACCAGCTCCCAGCTAGATCCCCTCTTGCCTTCTTTGGCACATTCGTTCTTGCTCTCT
GCTGTGGATTATTTGCCTCCGGCTCCGGCCAATCGGCGGCGTGGCGCGGGCAGATCGATC
GATCTCATCGGCGGCGGGGATTGCCTGTTCTAGCTATAGCTTGATAGCTTAGCTAGCTTG
GTCATTTCTGGTGAGAGATCGATCGAGATAGCGGCGAAGAAGATGGGGAGGGGGAAGATT
GTGATCCGCCGGATCGACAACTCGACGAGCCGGCAGGTGACGTTCTCGAAGCGGAGGAAC
GGGATCTTCAAGAAGGCCAAGGAGCTGGCCATCCTCTGCGACGCCGAGGTCGGCCTCATG
ATCTTCTCCAGCACCGGCCGCCTCTACGAGTACTCCAGCACCAGCATGAAGTCAGTTATA
GATCGGTATGGCAAGTCCAAGGATGAGCAGCAAGCCGTCGCAAATCCCAACTCGGAGCTT
AAGTTTTGGCAAAGGGAGGCAGCAAGCTTGAGACAACAACTGCACAACTTGCAAGAAAAT
CATCGGCAGTTGATGGGCGAAGATCTATCTGGGCTGAATGTTAAGGAATTGCAATCTCTA
GAGAATCAGCTGGAAATAAGTCTACGTAGTGTCCGTACAAAGAAGGACCACGTCTTGATT
GATGAAATTCATGAACTGAATCGGAAGGGAAGTCTAGTTCACCAAGAAAACATGGAATTA
TACAAGAAGATCAGTTTAATTCGTCAAGAAAATGCTGAGTTATATAAGAAGATCTACGAG
ACTGAAGGACCAAGTGAAGTCAATCGGGATTCACCAACTCCTTACAATTTTGCAGTAATT
GAAAAAACAAATGTTCCTGTGCAACTTGGACTCAGCACACTACCACAACATAGTGACGCC
GAACAATCAACTGCTCCTAAGCTAGGGTTACAGTTGAATCCATGACCAGAAAAACATTGT
TTTGCTACACCCTTGTATGCTGAAGGGATACTATTTGCTGTCAAGAGTTGATACTCAGAT
CAAG