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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0578400-01
CDS Infomation

cds chromosome:IRGSP-1.0:2:22234374:22235352:-1 gene:Os02g0578400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Photosystem II oxygen evolving complex protein PsbQ family protein. (Os02t0578400-01)
Sequence

ATGGCCACCCTCGCCAAGCACCTCATCCTGTGCTCCACCGCCACTAGCTCCTCCTCGTCT
GCCTCGTCCCCCACCTCGGCGCGCCGCCGCGGGACGGCGTCGCAGGCGGACGCGGCGGCG
GCGGCGGGGGAGAGGCACCAGCGCGGCGGGCCGCAGTCCGCGACGCGCCGGCTCGCGGTC
GCCGCGTCGACGGCGCTGGCTGCGACGGCGGCGCTGTCGGCGCGGCGCCCCGCGGCGCCT
CCCCCGGCCATGGCGGCGGAGGCGGCCGCGGTGCCGCCCCCGCCGCCGGGGCCCGGGACG
GTGCCGAGGTGGGGCACGAGGTCGTACGTCAGGGAGCGGTTCTTCGAGCCCGGGCTGACC
GCCGAGGAGGCCGCGGCGCGCATCCGGCAGACGGCGGAGGGGATGCGCACGCTGCGGCCC
ATGCTGGAGACCATGTCGTGGAAGTACGTGCTGTTCTACGTGCGCCTCAAGTCCAAGTAC
CTCGACCTCGACCTCACCACCGCCATGTTCGGCGTCCCCGAGGCCCGCCGCGCCGACTAC
GTCCGCGTCGCCAACGAGCTCGTCGATAACATGACCGAGTTCGATCGGTTCGTGCGGACG
CCCAAGGTGTACGAGTCGTACCTCTACTACGAGAAGACTCTCAAGTCTCTGGATGACGTG
ACAGAGTTCCTAGCTTGA

Peptide Sequence

PEP ID

Os02t0578400-01
PEP Infomation

pep chromosome:IRGSP-1.0:2:22234374:22235352:-1 gene:Os02g0578400 transcript:Os02t0578400-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Photosystem II oxygen evolving complex protein PsbQ family protein. (Os02t0578400-01)
Sequence

MATLAKHLILCSTATSSSSSASSPTSARRRGTASQADAAAAAGERHQRGGPQSATRRLAV
AASTALAATAALSARRPAAPPPAMAAEAAAVPPPPPGPGTVPRWGTRSYVRERFFEPGLT
AEEAAARIRQTAEGMRTLRPMLETMSWKYVLFYVRLKSKYLDLDLTTAMFGVPEARRADY
VRVANELVDNMTEFDRFVRTPKVYESYLYYEKTLKSLDDVTEFLA

Transcript Sequence

Transcript ID

Os02t0578400-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:22234374:22235352:-1 gene:Os02g0578400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Photosystem II oxygen evolving complex protein PsbQ family protein. (Os02t0578400-01)
Sequence

GCACTATCACTCCCCTCCACTTCGCTCGCCATGGCCACCCTCGCCAAGCACCTCATCCTG
TGCTCCACCGCCACTAGCTCCTCCTCGTCTGCCTCGTCCCCCACCTCGGCGCGCCGCCGC
GGGACGGCGTCGCAGGCGGACGCGGCGGCGGCGGCGGGGGAGAGGCACCAGCGCGGCGGG
CCGCAGTCCGCGACGCGCCGGCTCGCGGTCGCCGCGTCGACGGCGCTGGCTGCGACGGCG
GCGCTGTCGGCGCGGCGCCCCGCGGCGCCTCCCCCGGCCATGGCGGCGGAGGCGGCCGCG
GTGCCGCCCCCGCCGCCGGGGCCCGGGACGGTGCCGAGGTGGGGCACGAGGTCGTACGTC
AGGGAGCGGTTCTTCGAGCCCGGGCTGACCGCCGAGGAGGCCGCGGCGCGCATCCGGCAG
ACGGCGGAGGGGATGCGCACGCTGCGGCCCATGCTGGAGACCATGTCGTGGAAGTACGTG
CTGTTCTACGTGCGCCTCAAGTCCAAGTACCTCGACCTCGACCTCACCACCGCCATGTTC
GGCGTCCCCGAGGCCCGCCGCGCCGACTACGTCCGCGTCGCCAACGAGCTCGTCGATAAC
ATGACCGAGTTCGATCGGTTCGTGCGGACGCCCAAGGTGTACGAGTCGTACCTCTACTAC
GAGAAGACTCTCAAGTCTCTGGATGACGTGACAGAGTTCCTAGCTTGATTGTAAATATAT
CCTATATAGGTCTATATATAGGAACTTAATAATGTACTACTGTCGTCTTGAATTTGTAAT
CAAATTTTAAGTTCGTTAATTAATCGGAGAAAACGTGAGTATCATACACATAT