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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0577100-01
CDS Infomation

cds chromosome:IRGSP-1.0:2:22163299:22167298:-1 gene:Os02g0577100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os02t0577100-01)
Sequence

ATGGGGGATCATGTTGCGGTGGATGTTGGGGGGCTCATGGCGTCCCGGGGCGCCGGCGAG
GAGGAAACGGGGGCGCTGATTGGGATGGTGGAATGCCGCATTTGCCAGGAGGAGGACCTC
GCCAAGAACCTCGAGAGCCCCTGCGCTTGTAGCGGTAGCCTCAAGTACGCTCATAGAGAA
TGTGTGCAAAGATGGTGCAATGAGAAAGGAGACATAATCTGTGAAATCTGCCACGTGTCA
TACAAGCCTGGCTATACTGCCCCACCCCAGGTACATCATGATGAGACTACTATAGAGATC
AGTAGTGGAGATTGGTCTATCTCTGGCAATCGGTTGGATTTACATGATCCTAGAATCTTG
GCTATGGCTGCCGCTCAACACCGTTTACTTGAAGATGAGTATGATGAATATACTGCAACA
AACAACAATGCTGCTGCCTTTTGCCGCTCCATATTTCTAATTCTAATGGCTCTTCTACTC
TTAAGGCATACACTAACCATTACTAGTAGTGATGATGAAGATGACGCATCTGCTATTTTC
TCGTTGTTTCTTTTGAGGGCTGCTGGATTTTTGCTGCCATGCTATATCATGGCTTGGGCT
ATTAGTATCATGCAACGTCAAAGACAAAGACAGGAAGAAGCAATGCTTCTACCAACTGAA
GTGGCAATCATACTCCACCGAAATGGAAGGACTATGCAATTCGCCGTAGCGCCAGAATCT
CCTACCACACCTCATCCAGAACAAGGGCAATAG

Peptide Sequence

PEP ID

Os02t0577100-01
PEP Infomation

pep chromosome:IRGSP-1.0:2:22163299:22167298:-1 gene:Os02g0577100 transcript:Os02t0577100-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os02t0577100-01)
Sequence

MGDHVAVDVGGLMASRGAGEEETGALIGMVECRICQEEDLAKNLESPCACSGSLKYAHRE
CVQRWCNEKGDIICEICHVSYKPGYTAPPQVHHDETTIEISSGDWSISGNRLDLHDPRIL
AMAAAQHRLLEDEYDEYTATNNNAAAFCRSIFLILMALLLLRHTLTITSSDDEDDASAIF
SLFLLRAAGFLLPCYIMAWAISIMQRQRQRQEEAMLLPTEVAIILHRNGRTMQFAVAPES
PTTPHPEQGQ

Transcript Sequence

Transcript ID

Os02t0577100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:22163299:22167298:-1 gene:Os02g0577100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os02t0577100-01)
Sequence

GAGGAGGAGTGCTTCCCAGCTCATTCCGCCGAGGTCGTGAGAGCTGCTGAGCGTGGAGAT
TTTTTCTTTAAAACTTTTTTGGGTGATTTGCTGGAATGGGGGATCATGTTGCGGTGGATG
TTGGGGGGCTCATGGCGTCCCGGGGCGCCGGCGAGGAGGAAACGGGGGCGCTGATTGGGA
TGGTGGAATGCCGCATTTGCCAGGAGGAGGACCTCGCCAAGAACCTCGAGAGCCCCTGCG
CTTGTAGCGGTAGCCTCAAGTACGCTCATAGAGAATGTGTGCAAAGATGGTGCAATGAGA
AAGGAGACATAATCTGTGAAATCTGCCACGTGTCATACAAGCCTGGCTATACTGCCCCAC
CCCAGGTACATCATGATGAGACTACTATAGAGATCAGTAGTGGAGATTGGTCTATCTCTG
GCAATCGGTTGGATTTACATGATCCTAGAATCTTGGCTATGGCTGCCGCTCAACACCGTT
TACTTGAAGATGAGTATGATGAATATACTGCAACAAACAACAATGCTGCTGCCTTTTGCC
GCTCCATATTTCTAATTCTAATGGCTCTTCTACTCTTAAGGCATACACTAACCATTACTA
GTAGTGATGATGAAGATGACGCATCTGCTATTTTCTCGTTGTTTCTTTTGAGGGCTGCTG
GATTTTTGCTGCCATGCTATATCATGGCTTGGGCTATTAGTATCATGCAACGTCAAAGAC
AAAGACAGGAAGAAGCAATGCTTCTACCAACTGAAGTGGCAATCATACTCCACCGAAATG
GAAGGACTATGCAATTCGCCGTAGCGCCAGAATCTCCTACCACACCTCATCCAGAACAAG
GGCAATAGAATTTGCTGGCAACAGGCATATCTTGTGAGTGCATACAAGATACCTTGAGCC
TTCTACACCCTGACTCTGTGTACACTGCAAGCCGGTTGCACCAGCCACTTTCAATGGCCA
AATTGCAGCAAAAAAGTGTTGCGTGTCTATCTCTCGATTTGCATAAACTTTGCAGCTAGG
CTTGAATGCTTTTGTGATTGGCTTTCAGCTTCTTCTGCACATAAAGAGATTCCTTTCAAT
AAATGAATATAAGCTAAATTAACAAGAAGAATTCTTGTTCCAGGGTCACTAGACTTGTTC
ATGGCTTCGTGCTGCGACGGGCCAGCTACTGTTCCAACAAATCCGGAGCTTTTTTTTTTT
TCGTCTTGGTCTGTTTACCAATTCCTTCTGTTTTGAGAACCACAATTTTCACGTCTGTGG
AAGCCTGTAAGCTCTACACACGCAAGCCATGCTTCAATTGC