Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os02t0573200-01
CDS Infomation	cds chromosome:IRGSP-1.0:2:21976544:21980274:1 gene:Os02g0573200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:cryptochrome 1a, Blue-light-receptor cryptochrome 1 description:Similar to Cryptochrome 1. (Os02t0573200-01);Cryptochrome 1a, blue light photoreceptor, Regulation of blue light-mediated de-etiolation, Blue light-dependent inhibition of coleoptile and leaf elongation (Os02t0573200-02)
Sequence	ATGTCAGCGTCGCCGTCGTCGATGAGCGGCGCCGGCGCCGGCGAGGCGGGGGTGCGGACG GTGGTGTGGTTCAGGCGGGACCTGCGCGTGGAGGACAACCCGGCGCTGGCGGCGGCGGCG CGGGCGGCCGGGGAGGTGGTGCCGGTGTACGTGTGGGCGCCGGAGGAGGACGGGCCGTAC TACCCGGGGCGGGTGTCCCGGTGGTGGCTCAGCCAGAGCCTCAAGCACCTGGACGCCTCG CTCCGGCGGCTCGGCGCCAGCAGGCTCGTCACCCGCCGCTCCGCCGACGCCGTCGTCGCG CTCATCGAGCTCGTCCGCAGCATCGGCGCCACGCATCTCTTCTTCAACCACCTCTACGAC CCGCTGTCGCTGGTGAGGGACCACCGGGTGAAGGCGCTGCTGACGGCCGAGGGCATCGCC GTGCAGTCGTTCAACGCCGACCTGCTGTACGAGCCATGGGAGGTGGTCGACGACGACGGC TGCCCGTTCACCATGTTCGCGCCGTTCTGGGACAGGTGCCTGTGCATGCCCGACCCGGCG GCGCCGCTGCTGCCGCCCAAGAGGATCGCGCCCGGCGAGCTGCCGGCGAGGAGGTGCCCC TCCGACGAGCTGGTGTTCGAGGACGAGTCCGAGCGGGGGAGCAACGCGCTGCTGGCGAGG GCGTGGTCGCCCGGGTGGCAGAACGCCGACAAGGCGCTGGCCGCGTTCCTCAACGGGCCA CTCATGGACTACTCGGTGAACCGGAAGAAGGCCGACAGCGCCAGCACGTCACTGCTGTCG CCGTACCTGCACTTCGGCGAGCTCAGCGTACGCAAGGTGTTCCACCAGGTGAGGATGAAG CAGCTCATGTGGAGCAACGAGGGGAACCACGCCGGCGACGAGAGCTGCGTCCTCTTCCTC CGGTCCATCGGCCTCAGGGAGTACTCGAGGTACCTCACGTTCAACCACCCGTGCAGCCTG GAGAAGCCACTCCTGGCGCACCTCAGGTTCTTCCCCTGGGTGGTCGACGAGGTGTACTTC AAGGTGTGGAGGCAGGGGAGGACAGGGTACCCTCTCGTCGACGCCGGGATGCGCGAGCTC TGGGCCACCGGCTGGCTGCACGACCGGATACGCGTCGTCGTCTCCAGCTTCTTCGTCAAG GTGCTCCAGCTTCCATGGCGCTGGGGGATGAAGTACTTCTGGGACACCCTGCTCGACGCC GACCTCGAGAGCGACGCGCTCGGCTGGCAGTACATCTCCGGCTCTCTCCCCGATGGCCGT GAGCTCGACCGCATCGACAACCCTCAGCTTGAAGGATACAAGTTTGATCCGCACGGGGAG TATGTCCGGCGATGGCTGCCGGAGCTGGCAAGGCTGCCGACGGAGTGGATACACCACCCA TGGGACGCACCGGAGTCGGTGCTCCAGGCTGCAGGGATTGAGCTAGGCTCCAACTATCCT CTCCCCATCGTGGAGCTGGACGCGGCGAAGACCAGGCTGCAGGATGCACTGTCAGAGATG TGGGAGCTCGAGGCCGCGTCACGCGCAGCGATGGAGAACGGAATGGAGGAGGGCCTCGGC GACTCCTCCGACGTGCCGCCGATCGCCTTCCCACCGGAGCTGCAGATGGAAGTTGACCGA GCACCGGCCCAGCCTACTGTTCACGGACCGACAACGGCTGGCCGGCGACGAGAGGATCAG ATGGTTCCCAGCATGACCTCCTCGCTGGTCAGAGCTGAAACAGAACTTTCAGCGGATTTT GACAACAGCATGGACAGTAGGCCGGAGGTGCCGTCGCAGGTGCTCTTCCAGCCTCGGATG GAAAGGGAAGAAACAGTGGACGGCGGCGGTGGCGGCGGAATGGTCGGCAGGAGCAACGGC GGCGGCCACCAAGGCCAACACCAGCAGCAACAGCACAACTTTCAGACTACAATTCACCGG GCACGGGGCGTTGCGCCGTCTACGTCAGAGGCATCAAGCAACTGGACTGGGAGAGAAGGC GGCGTGGTGCCCGTCTGGTCGCCTCCGGCAGCGTCAGGCCCCTCAGATCACTACGCTGCC GATGAAGCTGACATTACCAGTAGAAGTTATTTGGACAGGCATCCACAGTCGCATACGTTG ATGAACTGGAGTCAGCTCTCGCAGTCATTGACAACAGGCTGGGAAGTGGAAAATTAA

Peptide Sequence

PEP ID	Os02t0573200-01
PEP Infomation	pep chromosome:IRGSP-1.0:2:21976544:21980274:1 gene:Os02g0573200 transcript:Os02t0573200-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:cryptochrome 1a, Blue-light-receptor cryptochrome 1 description:Similar to Cryptochrome 1. (Os02t0573200-01);Cryptochrome 1a, blue light photoreceptor, Regulation of blue light-mediated de-etiolation, Blue light-dependent inhibition of coleoptile and leaf elongation (Os02t0573200-02)
Sequence	MSASPSSMSGAGAGEAGVRTVVWFRRDLRVEDNPALAAAARAAGEVVPVYVWAPEEDGPY YPGRVSRWWLSQSLKHLDASLRRLGASRLVTRRSADAVVALIELVRSIGATHLFFNHLYD PLSLVRDHRVKALLTAEGIAVQSFNADLLYEPWEVVDDDGCPFTMFAPFWDRCLCMPDPA APLLPPKRIAPGELPARRCPSDELVFEDESERGSNALLARAWSPGWQNADKALAAFLNGP LMDYSVNRKKADSASTSLLSPYLHFGELSVRKVFHQVRMKQLMWSNEGNHAGDESCVLFL RSIGLREYSRYLTFNHPCSLEKPLLAHLRFFPWVVDEVYFKVWRQGRTGYPLVDAGMREL WATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGR ELDRIDNPQLEGYKFDPHGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGIELGSNYP LPIVELDAAKTRLQDALSEMWELEAASRAAMENGMEEGLGDSSDVPPIAFPPELQMEVDR APAQPTVHGPTTAGRRREDQMVPSMTSSLVRAETELSADFDNSMDSRPEVPSQVLFQPRM EREETVDGGGGGGMVGRSNGGGHQGQHQQQQHNFQTTIHRARGVAPSTSEASSNWTGREG GVVPVWSPPAASGPSDHYAADEADITSRSYLDRHPQSHTLMNWSQLSQSLTTGWEVEN

Transcript Sequence

Transcript ID	Os02t0573200-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:2:21976544:21980274:1 gene:Os02g0573200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:cryptochrome 1a, Blue-light-receptor cryptochrome 1 description:Similar to Cryptochrome 1. (Os02t0573200-01);Cryptochrome 1a, blue light photoreceptor, Regulation of blue light-mediated de-etiolation, Blue light-dependent inhibition of coleoptile and leaf elongation (Os02t0573200-02)
Sequence	AGTTTCTCTCTCCCCACAACCAAACCAAAACTAAGAAACCCCTGCTGCTCTCTGCAAGAA CTCCATCAAATTCCCCAGCCAAAAACACTCAGATAATTTTTTTTATTAGAAAAAAAGAAA GGAGATTAGCCAGCCAGTCTGCTGCTCCATCTCAGTGCTCACGCACTCACTCTGAGGAGT GAAATCCAATCCAGCCCACTCCGGAGTTCCTGGAAAATCCTCGCGAAGTCCAAGAAAAAA AATATTACCACTGCCATTTCTTGGTTTCTTGATAGCTTCTCCTAGCTGCTGCCGCCCAAT CATCCGAGAGAGCGAGCAAGTAAGAAAGATTGATTGATTGCTTGATTGGGAGTGTCCTTT GGGCGAGCTGTGGTGGGATTTAGCGGCATGTCAGCGTCGCCGTCGTCGATGAGCGGCGCC GGCGCCGGCGAGGCGGGGGTGCGGACGGTGGTGTGGTTCAGGCGGGACCTGCGCGTGGAG GACAACCCGGCGCTGGCGGCGGCGGCGCGGGCGGCCGGGGAGGTGGTGCCGGTGTACGTG TGGGCGCCGGAGGAGGACGGGCCGTACTACCCGGGGCGGGTGTCCCGGTGGTGGCTCAGC CAGAGCCTCAAGCACCTGGACGCCTCGCTCCGGCGGCTCGGCGCCAGCAGGCTCGTCACC CGCCGCTCCGCCGACGCCGTCGTCGCGCTCATCGAGCTCGTCCGCAGCATCGGCGCCACG CATCTCTTCTTCAACCACCTCTACGACCCGCTGTCGCTGGTGAGGGACCACCGGGTGAAG GCGCTGCTGACGGCCGAGGGCATCGCCGTGCAGTCGTTCAACGCCGACCTGCTGTACGAG CCATGGGAGGTGGTCGACGACGACGGCTGCCCGTTCACCATGTTCGCGCCGTTCTGGGAC AGGTGCCTGTGCATGCCCGACCCGGCGGCGCCGCTGCTGCCGCCCAAGAGGATCGCGCCC GGCGAGCTGCCGGCGAGGAGGTGCCCCTCCGACGAGCTGGTGTTCGAGGACGAGTCCGAG CGGGGGAGCAACGCGCTGCTGGCGAGGGCGTGGTCGCCCGGGTGGCAGAACGCCGACAAG GCGCTGGCCGCGTTCCTCAACGGGCCACTCATGGACTACTCGGTGAACCGGAAGAAGGCC GACAGCGCCAGCACGTCACTGCTGTCGCCGTACCTGCACTTCGGCGAGCTCAGCGTACGC AAGGTGTTCCACCAGGTGAGGATGAAGCAGCTCATGTGGAGCAACGAGGGGAACCACGCC GGCGACGAGAGCTGCGTCCTCTTCCTCCGGTCCATCGGCCTCAGGGAGTACTCGAGGTAC CTCACGTTCAACCACCCGTGCAGCCTGGAGAAGCCACTCCTGGCGCACCTCAGGTTCTTC CCCTGGGTGGTCGACGAGGTGTACTTCAAGGTGTGGAGGCAGGGGAGGACAGGGTACCCT CTCGTCGACGCCGGGATGCGCGAGCTCTGGGCCACCGGCTGGCTGCACGACCGGATACGC GTCGTCGTCTCCAGCTTCTTCGTCAAGGTGCTCCAGCTTCCATGGCGCTGGGGGATGAAG TACTTCTGGGACACCCTGCTCGACGCCGACCTCGAGAGCGACGCGCTCGGCTGGCAGTAC ATCTCCGGCTCTCTCCCCGATGGCCGTGAGCTCGACCGCATCGACAACCCTCAGCTTGAA GGATACAAGTTTGATCCGCACGGGGAGTATGTCCGGCGATGGCTGCCGGAGCTGGCAAGG CTGCCGACGGAGTGGATACACCACCCATGGGACGCACCGGAGTCGGTGCTCCAGGCTGCA GGGATTGAGCTAGGCTCCAACTATCCTCTCCCCATCGTGGAGCTGGACGCGGCGAAGACC AGGCTGCAGGATGCACTGTCAGAGATGTGGGAGCTCGAGGCCGCGTCACGCGCAGCGATG GAGAACGGAATGGAGGAGGGCCTCGGCGACTCCTCCGACGTGCCGCCGATCGCCTTCCCA CCGGAGCTGCAGATGGAAGTTGACCGAGCACCGGCCCAGCCTACTGTTCACGGACCGACA ACGGCTGGCCGGCGACGAGAGGATCAGATGGTTCCCAGCATGACCTCCTCGCTGGTCAGA GCTGAAACAGAACTTTCAGCGGATTTTGACAACAGCATGGACAGTAGGCCGGAGGTGCCG TCGCAGGTGCTCTTCCAGCCTCGGATGGAAAGGGAAGAAACAGTGGACGGCGGCGGTGGC GGCGGAATGGTCGGCAGGAGCAACGGCGGCGGCCACCAAGGCCAACACCAGCAGCAACAG CACAACTTTCAGACTACAATTCACCGGGCACGGGGCGTTGCGCCGTCTACGTCAGAGGCA TCAAGCAACTGGACTGGGAGAGAAGGCGGCGTGGTGCCCGTCTGGTCGCCTCCGGCAGCG TCAGGCCCCTCAGATCACTACGCTGCCGATGAAGCTGACATTACCAGTAGAAGTTATTTG GACAGGCATCCACAGTCGCATACGTTGATGAACTGGAGTCAGCTCTCGCAGTCATTGACA ACAGGCTGGGAAGTGGAAAATTAATGCTGATTGTCAGAATTAATCATTAGGAAGGTCGAC ATTGAGAAGAATTCATATGTAAATTATCACCTTTTGTTTGTCTATAGCCTTGGTGTGCAT GAATCAAGTGATGAAGCTTCCTTGATGCAATAATGATTATGTAAAGCTAGTTTTACAGAA CATTTGTGGTATAGGTTTGCTAGTTGTCAAAAGGATATGTACTATTTGTTAGATAAGAGG TTATTCTAGCATTATGTCTTAGACTTGTACATTCTCCCTTTGGTTATTGTAATCTTGGTG GAATAGTCATC