Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os02t0568200-00
CDS Infomation	cds chromosome:IRGSP-1.0:2:21608165:21613272:-1 gene:Os02g0568200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:COLEOPTILE PHOTOTROPISM 1 description:NPH3 domain containing protein. (Os02t0568200-00)
Sequence	ATGTGGGAGTCGGAGAGCGAGAGCCACGGCGGCGAGCGGGGGCTCGTCCCCGTCGGCGGC GGCGGCGGCTCAGGCCGGCACGAGGCGGCGCTCAAGAACGACGGCTTCGTCCGCAGAGAC CGGTCTTGGTATGTCAACAGTGACATCCCCAGCGATCTGCTCGTCAAAGTGGGAGACGTG AACTTCTACCTTCACAAGTATCCGATGATCTCCCGGAGCGGGCGGATGAGCCGCGCCGTG TACGAGTCGTCGGCGGCAGATGAGGCGGAGGCGGACGCGGCGGCGGCGGTGGCGGTGGTG GAGATGGGCGACCTGCCGGGTGGCGCGGGGTCGTTCGAGCTGGCGGCGCGGTTCAGCTAC GGGATGGCGGTGGACCTGACGGCGGCGAACATCTCCGGGCTTCGCTGCGCCGCCGAGTAC CTGGAGATGACGGAGGAGATGGAGGAAGGGAACCTCATCTTCAAGACGGAGGCGTTCCTC AGCTACGTGGTGCTGTCGTCGTGGCGCGACTCCATCGCCGTGCTCAAGAGCTGCGAGGCG CTCTCGCCGTGGGCGGAGAACCTGCAGATCGTGCGGCGGTGCAGCGAGTCCATCGCCTGG AAGGCGTGCGCCAACCCGCGCGGCGTGCGCTGGGCGTACACCGGCGCCGGCGCCGGCAGC GGAGGAGCGCGCGGGGGCCCGGCGGCGATCAGGGGAGGTGGCGGCTCTGGCGGCACGGCG AGCCCGCGGTGGAACGTCGGTGGCGGCGGAGGGGGGGAGTCGAAGGAGTCGAGCCCGAGC AGGCAGGCGGTGCCGCCGGCGGACTGGTGGTTCGAGGACGTGTCCGTGCTCAGGATCGAC CACTTCGTGCGCGTCGTCACCGCCATCAAGGTCAAAGGCATGCGGTTCGACCTGATCGGC GCGGCGATCACCCACTACGCGTCGAAATGGCTCCCCGGCCTCACCAAGGACGCCCCGCTC GGCGCCACCCACGACGAGCCGTGGGCGCAGGCCTCCGCCGCCGGCGTCGGCGGCGGCGGC CTCCACATGATGATCATCTCCGGCGCCGGCGGCGGCAAGGACGACGTCCTCGCCGCCTGC AGCGCGCCGTCGCGCGAGCAGCGCATGGTGGTGGAGAGCATCATCAGCATCACCCCGCCG CAGCGGGACAGCGTCTCCTGCGGCTTCCTCCTCCGCCTCCTCCGCCTCGCCATCATGCTC AGGGCCGCCCCGGCGCTGGTCACCGAGCTCGAGAAGCGCGTCGGGATGCAGCTCGAGCAG GCGGCGCTCGCCGACCTCCTCATCCCCTCCTACGGCGGCCGCGCCGCCGACACCGCCTAC GACGTCGACCTCGTGCAGCGCCTCGTCGAGCACTTCCTGGTTCAGGAGCAGACGGAGATG GCGGTGGCGTCCAGCCCCGGCCGCGGCGACCCTCCGCCGCCGCCGCAGCCGGAGTACTAC AGCGGGAGGATGCCGCCGTCGTCCGCGGCCGCGGCGTCGGCGTCGGCGTCGACGGGCGGG CTGAACGCCAAGGCGCGCGTCGCCCGGCTGCTCGACAGCTACCTCTCCGAGGTCTCCCGC GACCGCAACCTCTCCCTCACCAAGTTCCAGGTCCTCGCCGAGTCGCTGCCGGAGTCGGCG CGCGCCTGCGACGACGGCCTGTACCGCGCCGTCGACTCCTACCTCAAGGCGCACCCGACG CTGACGGAGCACGAGAGGAAGAGGCTGTGCAGGGTGATGGACTGCCAGAAGCTGTCGTTC GACGCGTGCATGCACGCGGCGCAGAACGAGAGGCTGCCGCTGCGGGTGGTGGTGCAGGTG CTCTTCACCGAGCAGGTCAAGATCAGCAACGCGCTGGCGAGCTCCTCCGCGGCGCTCAGG TCGTCGTCTTCGGCGCCGGGGGCGGACGCCGCGCCGGCGATGCCGACGACGCGGCGGCAG CTGCTGGACGGGACGCCGCAGTCGTTCCAGGAGGGGTGGGCGGCGGCGAAGAAGGACATC AACACGCTCAAGTTCGAGCTGGAGAGCATGAAGGCCAAGTACCTGGAGCTCCAGCACGAG ATGGACGCGCTCCAGAAACAGGTGGACGGCCGCGGCGGCGGCGCGCCGTCGCCGGCGGCC GCCAAGATCGGCAAGCAGCAGCAGCAGGGCACGTCGGCGTCGGCGTGGAGCAGCGGGTGG AAGAAGCTGGGCAGGCTGGCCAAGATGTCCGGCGCCGACGCGGCGGCCGGTGGTGGCGTG GCGCCGCCCGGCGGCGGCGAGGCCGCGGCGAGGAAGGGCCCGAGAAGGTGGAGGAACTCC ATCTCGTAA

Peptide Sequence

PEP ID	Os02t0568200-00
PEP Infomation	pep chromosome:IRGSP-1.0:2:21608165:21613272:-1 gene:Os02g0568200 transcript:Os02t0568200-00 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:COLEOPTILE PHOTOTROPISM 1 description:NPH3 domain containing protein. (Os02t0568200-00)
Sequence	MWESESESHGGERGLVPVGGGGGSGRHEAALKNDGFVRRDRSWYVNSDIPSDLLVKVGDV NFYLHKYPMISRSGRMSRAVYESSAADEAEADAAAAVAVVEMGDLPGGAGSFELAARFSY GMAVDLTAANISGLRCAAEYLEMTEEMEEGNLIFKTEAFLSYVVLSSWRDSIAVLKSCEA LSPWAENLQIVRRCSESIAWKACANPRGVRWAYTGAGAGSGGARGGPAAIRGGGGSGGTA SPRWNVGGGGGGESKESSPSRQAVPPADWWFEDVSVLRIDHFVRVVTAIKVKGMRFDLIG AAITHYASKWLPGLTKDAPLGATHDEPWAQASAAGVGGGGLHMMIISGAGGGKDDVLAAC SAPSREQRMVVESIISITPPQRDSVSCGFLLRLLRLAIMLRAAPALVTELEKRVGMQLEQ AALADLLIPSYGGRAADTAYDVDLVQRLVEHFLVQEQTEMAVASSPGRGDPPPPPQPEYY SGRMPPSSAAAASASASTGGLNAKARVARLLDSYLSEVSRDRNLSLTKFQVLAESLPESA RACDDGLYRAVDSYLKAHPTLTEHERKRLCRVMDCQKLSFDACMHAAQNERLPLRVVVQV LFTEQVKISNALASSSAALRSSSSAPGADAAPAMPTTRRQLLDGTPQSFQEGWAAAKKDI NTLKFELESMKAKYLELQHEMDALQKQVDGRGGGAPSPAAAKIGKQQQQGTSASAWSSGW KKLGRLAKMSGADAAAGGGVAPPGGGEAAARKGPRRWRNSIS

Transcript Sequence

Transcript ID	Os02t0568200-00
Transcript Infomation	cdna chromosome:IRGSP-1.0:2:21608165:21613272:-1 gene:Os02g0568200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:COLEOPTILE PHOTOTROPISM 1 description:NPH3 domain containing protein. (Os02t0568200-00)
Sequence	GTGCTATATCTTGCAGTGCATAGCCAGTACTGTCACTCAGCCTGCAGTTTATTGTATAAC TGTGCAGTTCCGAAACAAACAAGCCAACAGCCCATGTGGTCGTCTCCTTCCCATAACCTC ATCGATCACAAGGACCAATGGATATTCCCCCCTTTCATATCATTTATCATATGCCCTTCA ATTCCCGAGCTCTCTCACTAACCAGCTACTACTAGTTTCCCACCAATCAGTGCTCACTGC TCACCTCAGTCAGTCAGTAGTTCAGTACAGGCAGCAGCATCAGCAGCAGCTTCTTCTTCT TCTTCGATTGGGTTCTTGATCGTCGTCGTCGTCGATCTGTGCCTGAGGAGAAGGACGAGA AGTACGTGGAAATTAAGTGAAGGTCTCAGAGACGGCGAGAAGTATGTGGGAGTCGGAGAG CGAGAGCCACGGCGGCGAGCGGGGGCTCGTCCCCGTCGGCGGCGGCGGCGGCTCAGGCCG GCACGAGGCGGCGCTCAAGAACGACGGCTTCGTCCGCAGAGACCGGTCTTGGTATGTCAA CAGTGACATCCCCAGCGATCTGCTCGTCAAAGTGGGAGACGTGAACTTCTACCTTCACAA GTATCCGATGATCTCCCGGAGCGGGCGGATGAGCCGCGCCGTGTACGAGTCGTCGGCGGC AGATGAGGCGGAGGCGGACGCGGCGGCGGCGGTGGCGGTGGTGGAGATGGGCGACCTGCC GGGTGGCGCGGGGTCGTTCGAGCTGGCGGCGCGGTTCAGCTACGGGATGGCGGTGGACCT GACGGCGGCGAACATCTCCGGGCTTCGCTGCGCCGCCGAGTACCTGGAGATGACGGAGGA GATGGAGGAAGGGAACCTCATCTTCAAGACGGAGGCGTTCCTCAGCTACGTGGTGCTGTC GTCGTGGCGCGACTCCATCGCCGTGCTCAAGAGCTGCGAGGCGCTCTCGCCGTGGGCGGA GAACCTGCAGATCGTGCGGCGGTGCAGCGAGTCCATCGCCTGGAAGGCGTGCGCCAACCC GCGCGGCGTGCGCTGGGCGTACACCGGCGCCGGCGCCGGCAGCGGAGGAGCGCGCGGGGG CCCGGCGGCGATCAGGGGAGGTGGCGGCTCTGGCGGCACGGCGAGCCCGCGGTGGAACGT CGGTGGCGGCGGAGGGGGGGAGTCGAAGGAGTCGAGCCCGAGCAGGCAGGCGGTGCCGCC GGCGGACTGGTGGTTCGAGGACGTGTCCGTGCTCAGGATCGACCACTTCGTGCGCGTCGT CACCGCCATCAAGGTCAAAGGCATGCGGTTCGACCTGATCGGCGCGGCGATCACCCACTA CGCGTCGAAATGGCTCCCCGGCCTCACCAAGGACGCCCCGCTCGGCGCCACCCACGACGA GCCGTGGGCGCAGGCCTCCGCCGCCGGCGTCGGCGGCGGCGGCCTCCACATGATGATCAT CTCCGGCGCCGGCGGCGGCAAGGACGACGTCCTCGCCGCCTGCAGCGCGCCGTCGCGCGA GCAGCGCATGGTGGTGGAGAGCATCATCAGCATCACCCCGCCGCAGCGGGACAGCGTCTC CTGCGGCTTCCTCCTCCGCCTCCTCCGCCTCGCCATCATGCTCAGGGCCGCCCCGGCGCT GGTCACCGAGCTCGAGAAGCGCGTCGGGATGCAGCTCGAGCAGGCGGCGCTCGCCGACCT CCTCATCCCCTCCTACGGCGGCCGCGCCGCCGACACCGCCTACGACGTCGACCTCGTGCA GCGCCTCGTCGAGCACTTCCTGGTTCAGGAGCAGACGGAGATGGCGGTGGCGTCCAGCCC CGGCCGCGGCGACCCTCCGCCGCCGCCGCAGCCGGAGTACTACAGCGGGAGGATGCCGCC GTCGTCCGCGGCCGCGGCGTCGGCGTCGGCGTCGACGGGCGGGCTGAACGCCAAGGCGCG CGTCGCCCGGCTGCTCGACAGCTACCTCTCCGAGGTCTCCCGCGACCGCAACCTCTCCCT CACCAAGTTCCAGGTCCTCGCCGAGTCGCTGCCGGAGTCGGCGCGCGCCTGCGACGACGG CCTGTACCGCGCCGTCGACTCCTACCTCAAGGCGCACCCGACGCTGACGGAGCACGAGAG GAAGAGGCTGTGCAGGGTGATGGACTGCCAGAAGCTGTCGTTCGACGCGTGCATGCACGC GGCGCAGAACGAGAGGCTGCCGCTGCGGGTGGTGGTGCAGGTGCTCTTCACCGAGCAGGT CAAGATCAGCAACGCGCTGGCGAGCTCCTCCGCGGCGCTCAGGTCGTCGTCTTCGGCGCC GGGGGCGGACGCCGCGCCGGCGATGCCGACGACGCGGCGGCAGCTGCTGGACGGGACGCC GCAGTCGTTCCAGGAGGGGTGGGCGGCGGCGAAGAAGGACATCAACACGCTCAAGTTCGA GCTGGAGAGCATGAAGGCCAAGTACCTGGAGCTCCAGCACGAGATGGACGCGCTCCAGAA ACAGGTGGACGGCCGCGGCGGCGGCGCGCCGTCGCCGGCGGCCGCCAAGATCGGCAAGCA GCAGCAGCAGGGCACGTCGGCGTCGGCGTGGAGCAGCGGGTGGAAGAAGCTGGGCAGGCT GGCCAAGATGTCCGGCGCCGACGCGGCGGCCGGTGGTGGCGTGGCGCCGCCCGGCGGCGG CGAGGCCGCGGCGAGGAAGGGCCCGAGAAGGTGGAGGAACTCCATCTCGTAAATGGAGTA GCTGCCTAGCTAGATGCTGTATGGTTGATTGGTTTCAACTTTCAAGTAATTTCATGGGTC TTTTGTATTTTGAGAGAGTCCATTTTGCTCAGTTTGATGTAGTGATGTTCATGGCGTTTT CAGACAGAATTAATCCATTTTATGCAGAGTCTGAGGACTACTCAAGC