Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0556900-02
CDS Infomation

cds chromosome:IRGSP-1.0:2:21064137:21068994:-1 gene:Os02g0556900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to H0525C06.6 protein. (Os02t0556900-01);DDT domain containing protein. (Os02t0556900-02)
Sequence

ATGCCTCTTTTCAAGAGGAAACCTTTCTCCTTACTTGAGCCCCCCAAGGACTTGGATTCT
AAGGAGAAGGTTTTCCAAATTCGGTTCACAAGGGAGATATTCCGAGATTACCAAGACTAC
ATAAACAGGTTGAATCTTTATCGGCAAAGGGTTTGGTCATGTAAGATATCCGGAAAATCA
AACTTGACTTTTGAAGAAGCTTTGGTCTCCGAGCATCATGCAGTGTCAAAGGCTCAGAAA
TTACCCACAGAACTGATGGCTCCTGTTCTTCGGATGATTCAATACAGCACTCTTGGATTA
TATGAGCTTGTTGAGAAGATATATGCTAGCCTGCAGGAAGCTGTATTTGAAGGATTAGAA
TTATATGCTAAACAGGATGGTTTAGAGGCTGCTTGCAGGATTTTGAAGATTTTAGGGTCT
GATGGCACCAAGATGTATGAAGTTGGTTGGCTTCTTAGGGACAAGACTATCATCAGTACG
TCAGTGATCAAAGGTGAAGACTTGATTCACCGGAGGCCACCTGTTAGTAGGAATACGCTG
AAGATTTTTATTAGAGATGCAACTTCTCAAAATGCCCCATGGGTTATACATGAAAATCTT
GCCAAAAGATATGGCATACCCATTGAGCCCCCGAATGACATGATGTTTGGTGAAGGTTTG
CAAAAGAAAGGGAGGAAAAGACGTGAGGATGGACCTATGGGAGATCCCAAAAAAAAGATG
AAGAACGATGAGGAACACATAAATGTTCCAATTAAGTACCCAATAGATGATCTCTTAGTA
CAACCTTCTGCAGATGATCATGCTTTATTGAAGAGACCTCCTCTGGCTACAGATTTTAGA
GTACCAAAATATTCTGTGGGCGATCTCCTTATGGTATGGGACTTCTGCTTGTCCTTCGGG
AGGGTTCTGAATCTATCCCCATTTTCACTGGTAGATTTGGAGAATGCAATTTGCCACAAA
GAAAGCAATGCACTTCTTGTGGAAATACATACAGCTATATTCCACTTGCTTATTAAGGAT
GAAGGTGACTATTTCACTATTCTGCGGACCAAGAAACGGAAGCTAAAGGTGACTTTAGTA
ACATGGGCTGAATATCTCTGTGATTTCTTGGAAATGACAAAAACTGAAGAACTCACCAGA
AACATTGCAACAGTAAGAAAGGGTTATTATAGTCTTATTGATACTGATATCAAACTTAAG
ATTCTCCGGGAACTAGTAGAAGAAGCTATTACAACTTCTCCTGTAAGAGAGAAACTAAGT
GAACGGGTGGACCAGCGGCAAGCGCTCGCTGCGACTAAAAGAGAGAGTACTAGAAAGGCA
AAGGATGAGCAGAACTCAAGCATTGATGGATTGCAAGATGACAATGAGAGTGTTGATGAG
CAGGGTAAGGGGAAAGAAGAAAAGGATAAGAACAATATCTCTCGAAGCAAGACAGAAGGG
AAACGCCATGGGGTACAGCACCTCGAAACAGAGATTGAAAAATTATCCATCCGTTCCAGC
CCCCTTGGAAAAGACAGACACTATAACAGGTATTGGTTTTTCAGGCGTGAAGGAAGGCTT
TTTGTTGAAAGTGCAGATTCAAAAGAATGGGGATACTACAGCACTAAGGAAGAGCTCGAT
GTGTTAATGAGCTCACTGAACGTAAAAGGTTTAAGGGAGAGAGCTCTCAAACGGCAGCTG
GACAAGTTGTACAGTAAGATAAGTAATGCTCTGGAGAAACGATCAAAAGAAATCACACAC
AAATTGTTGCTTGAAGAGGCTGTATTGCGCCGTTCCACACGTGTCCGGGCTCAACCAAGG
GATAACCCATCCATGTCATTCCTGAAGTATGTCAACAAATGGAAGGATAACTAA

Peptide Sequence

PEP ID

Os02t0556900-02
PEP Infomation

pep chromosome:IRGSP-1.0:2:21064137:21068994:-1 gene:Os02g0556900 transcript:Os02t0556900-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to H0525C06.6 protein. (Os02t0556900-01);DDT domain containing protein. (Os02t0556900-02)
Sequence

MPLFKRKPFSLLEPPKDLDSKEKVFQIRFTREIFRDYQDYINRLNLYRQRVWSCKISGKS
NLTFEEALVSEHHAVSKAQKLPTELMAPVLRMIQYSTLGLYELVEKIYASLQEAVFEGLE
LYAKQDGLEAACRILKILGSDGTKMYEVGWLLRDKTIISTSVIKGEDLIHRRPPVSRNTL
KIFIRDATSQNAPWVIHENLAKRYGIPIEPPNDMMFGEGLQKKGRKRREDGPMGDPKKKM
KNDEEHINVPIKYPIDDLLVQPSADDHALLKRPPLATDFRVPKYSVGDLLMVWDFCLSFG
RVLNLSPFSLVDLENAICHKESNALLVEIHTAIFHLLIKDEGDYFTILRTKKRKLKVTLV
TWAEYLCDFLEMTKTEELTRNIATVRKGYYSLIDTDIKLKILRELVEEAITTSPVREKLS
ERVDQRQALAATKRESTRKAKDEQNSSIDGLQDDNESVDEQGKGKEEKDKNNISRSKTEG
KRHGVQHLETEIEKLSIRSSPLGKDRHYNRYWFFRREGRLFVESADSKEWGYYSTKEELD
VLMSSLNVKGLRERALKRQLDKLYSKISNALEKRSKEITHKLLLEEAVLRRSTRVRAQPR
DNPSMSFLKYVNKWKDN

Transcript Sequence

Transcript ID

Os02t0556900-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:21064137:21068994:-1 gene:Os02g0556900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to H0525C06.6 protein. (Os02t0556900-01);DDT domain containing protein. (Os02t0556900-02)
Sequence

ACAAATCGAACGCCCATTTCCCCAACGCCTCGCGCCACCCGCGCCGATCCGTTCGCCTCC
GCCGCCGCCGCGGCCGCCTCGCGGGCTCCCCGGCGACCCCCCCGCTCGTTCCCGTGCCGT
GCCGTGCCGTGTCGGCGTGTGCCCCCGCCCTGCCTGACCTGTCGTCGGTTGGATCGGAGG
TCCAATGCCTCTTTTCAAGAGGAAACCTTTCTCCTTACTTGAGCCCCCCAAGGACTTGGA
TTCTAAGGAGAAGGTTTTCCAAATTCGGTTCACAAGGGAGATATTCCGAGATTACCAAGA
CTACATAAACAGGTTGAATCTTTATCGGCAAAGGGTTTGGTCATGTAAGATATCCGGAAA
ATCAAACTTGACTTTTGAAGAAGCTTTGGTCTCCGAGCATCATGCAGTGTCAAAGGCTCA
GAAATTACCCACAGAACTGATGGCTCCTGTTCTTCGGATGATTCAATACAGCACTCTTGG
ATTATATGAGCTTGTTGAGAAGATATATGCTAGCCTGCAGGAAGCTGTATTTGAAGGATT
AGAATTATATGCTAAACAGGATGGTTTAGAGGCTGCTTGCAGGATTTTGAAGATTTTAGG
GTCTGATGGCACCAAGATGTATGAAGTTGGTTGGCTTCTTAGGGACAAGACTATCATCAG
TACGTCAGTGATCAAAGGTGAAGACTTGATTCACCGGAGGCCACCTGTTAGTAGGAATAC
GCTGAAGATTTTTATTAGAGATGCAACTTCTCAAAATGCCCCATGGGTTATACATGAAAA
TCTTGCCAAAAGATATGGCATACCCATTGAGCCCCCGAATGACATGATGTTTGGTGAAGG
TTTGCAAAAGAAAGGGAGGAAAAGACGTGAGGATGGACCTATGGGAGATCCCAAAAAAAA
GATGAAGAACGATGAGGAACACATAAATGTTCCAATTAAGTACCCAATAGATGATCTCTT
AGTACAACCTTCTGCAGATGATCATGCTTTATTGAAGAGACCTCCTCTGGCTACAGATTT
TAGAGTACCAAAATATTCTGTGGGCGATCTCCTTATGGTATGGGACTTCTGCTTGTCCTT
CGGGAGGGTTCTGAATCTATCCCCATTTTCACTGGTAGATTTGGAGAATGCAATTTGCCA
CAAAGAAAGCAATGCACTTCTTGTGGAAATACATACAGCTATATTCCACTTGCTTATTAA
GGATGAAGGTGACTATTTCACTATTCTGCGGACCAAGAAACGGAAGCTAAAGGTGACTTT
AGTAACATGGGCTGAATATCTCTGTGATTTCTTGGAAATGACAAAAACTGAAGAACTCAC
CAGAAACATTGCAACAGTAAGAAAGGGTTATTATAGTCTTATTGATACTGATATCAAACT
TAAGATTCTCCGGGAACTAGTAGAAGAAGCTATTACAACTTCTCCTGTAAGAGAGAAACT
AAGTGAACGGGTGGACCAGCGGCAAGCGCTCGCTGCGACTAAAAGAGAGAGTACTAGAAA
GGCAAAGGATGAGCAGAACTCAAGCATTGATGGATTGCAAGATGACAATGAGAGTGTTGA
TGAGCAGGGTAAGGGGAAAGAAGAAAAGGATAAGAACAATATCTCTCGAAGCAAGACAGA
AGGGAAACGCCATGGGGTACAGCACCTCGAAACAGAGATTGAAAAATTATCCATCCGTTC
CAGCCCCCTTGGAAAAGACAGACACTATAACAGGTATTGGTTTTTCAGGCGTGAAGGAAG
GCTTTTTGTTGAAAGTGCAGATTCAAAAGAATGGGGATACTACAGCACTAAGGAAGAGCT
CGATGTGTTAATGAGCTCACTGAACGTAAAAGGTTTAAGGGAGAGAGCTCTCAAACGGCA
GCTGGACAAGTTGTACAGTAAGATAAGTAATGCTCTGGAGAAACGATCAAAAGAAATCAC
ACACAAATTGTTGCTTGAAGAGGCTGTATTGCGCCGTTCCACACGTGTCCGGGCTCAACC
AAGGGATAACCCATCCATGTCATTCCTGAAGTATGTCAACAAATGGAAGGATAACTAAGT
AGCCAAGAGGACAGCTTGTCCGCAGGTGGGGGAACTGAGCTAGCTACTCGATGACAGGGT
TTTGTTTTCAGAGGAACATATATGAAGGTCTGATGAGGTGGTATGTTATTTGTTAGCCAA
TCCTCATGGCTGTTCTTTGAGCAATCATCACTAGGTAGCAAAACCAATTAACCTGTTGGT
TTACAGCCTTACACTGGACTGATAGAGCGCTACCAGAGCTAGTTTTTGGAGCTATATACC
CAGTGTAACTTATCTTACATGTAAACATGGTATTAGCCTCAGGAACCATGAGTTGCTAAA
CTGATATGCTGCTGATGTTATGCCGGTTTTGGATTTATCAGTCGCAGGGGATACATTTCT
CTATCATTATATTGTTTTCACTTG