Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0554100-01
CDS Infomation

cds chromosome:IRGSP-1.0:2:20913876:20919054:1 gene:Os02g0554100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to UVB-resistance protein UVR8. (Os02t0554100-01)
Sequence

ATGCATTCGACCGGCATGGAGATGGAGGTGGAGGTCGCCGGCGACGACGAGGCGGTCCCG
GAGGCGCCGGAGCGGTCCGTCGTCCTCATCTCCGCCGGCGCCAGCCACTCCGTCGCCCTG
CTCAGCGGCGGGGTGGTGTGCTCGTGGGGGCGCGGCGAGGACGGGCAGCTGGGGCACGGC
GACGCGGAGGACCGGCCGGTGCCGACGGTGCTGACGGCGGCGTTCGACGACGCGCCGGGG
GGCGTCGCCTCCGTCGTCATCTGCGGCGCCGACCACACCACCGCCTACTCCGACGAGGAG
CTGCAGCTCTACAGCTGGGGATGGGGCGACTTCGGGAGGCTGGGTCACGGCAACTCCAGC
GACGTGTTCAACCCGCAGCCCATCCAGGCGCTCCAGGGCGTCCGGATCACCCAGATCGCC
TGCGGCGACAGCCACTGCCTCGCCGTCACCGTCGCCGGCCATGTCCACAGCTGGGGACGC
AATCAAAATGGTCAGCTTGGCCTCGGAAACACCGAGGACTCCTTGCTCCCACAAAAGATT
CAAGCTTTTGAGGGTGTCCGTGTAAAAATGATTGCTGCTGGTGCCGAGCACACCGCTGCT
GTAACAGAAGATGGTGATCTCTACGGTTGGGGCTGGGGTCGGTATGGCAACTTGGGACTA
GGCGATCGCGATGACCGCTTAATCCCAGAAAAAGTTTCTTCTGTGAATGGTCAAAAGATG
GTGCTTGTAGCGTGCGGGTGGCGCCATACCATCACCGTGTCCTCCTCCGGTAGCATCTAC
ACATATGGATGGAGCAAGTATGGTCAGCTAGGGCATGGTGATTTTGAGGATCACCTGGTT
CCACACAAGTTGGAAGCATTGAAGGATACTACTATATCTCAAATTTCAGGTGGGTGGAGG
CATACAATGGCACTTGCAGCAGATGGGAAACTCTATGGATGGGGATGGAACAAGTTTGGA
CAAGTCGGTGTTGGCGATAATGAAGATCACTGCTCCCCGGTGCAGGTCAATTTTCCAAAC
GAACAGAAAGTTGTTCAAGTTGCTTGTGGATGGAGGCACACTCTTGCCCTGACAGAAGCC
AAAAATGTTTTCTCATGGGGAAGGGGCACCAGTGGACAGCTTGGCCATGGTGAAATAGTT
GATAGGAACATACCCAAGATGATCGATGCCTTGAGCTCGGATGGATCAGCTTGCAAGCAG
CTGGAATCATCAAAAGCCGTCCCAATGTCAGCTAAAGTTTGGGTCTCGCCATCAGAGCGA
TATGCCATCGTGCCGGATGAGAAGGCTGGAAAAGGCATCCCTGCTGGCAATGGAACAGAG
ACTCATGTGCCCCAAGGAGATGTGAAGAGGATGCGCGTCTGA

Peptide Sequence

PEP ID

Os02t0554100-01
PEP Infomation

pep chromosome:IRGSP-1.0:2:20913876:20919054:1 gene:Os02g0554100 transcript:Os02t0554100-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to UVB-resistance protein UVR8. (Os02t0554100-01)
Sequence

MHSTGMEMEVEVAGDDEAVPEAPERSVVLISAGASHSVALLSGGVVCSWGRGEDGQLGHG
DAEDRPVPTVLTAAFDDAPGGVASVVICGADHTTAYSDEELQLYSWGWGDFGRLGHGNSS
DVFNPQPIQALQGVRITQIACGDSHCLAVTVAGHVHSWGRNQNGQLGLGNTEDSLLPQKI
QAFEGVRVKMIAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRDDRLIPEKVSSVNGQKM
VLVACGWRHTITVSSSGSIYTYGWSKYGQLGHGDFEDHLVPHKLEALKDTTISQISGGWR
HTMALAADGKLYGWGWNKFGQVGVGDNEDHCSPVQVNFPNEQKVVQVACGWRHTLALTEA
KNVFSWGRGTSGQLGHGEIVDRNIPKMIDALSSDGSACKQLESSKAVPMSAKVWVSPSER
YAIVPDEKAGKGIPAGNGTETHVPQGDVKRMRV

Transcript Sequence

Transcript ID

Os02t0554100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:20913876:20919054:1 gene:Os02g0554100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to UVB-resistance protein UVR8. (Os02t0554100-01)
Sequence

ACTCTGCTCTCGTTCTCTTCTGTCTGCTACTACCATGCATTCGACCGGCATGGAGATGGA
GGTGGAGGTCGCCGGCGACGACGAGGCGGTCCCGGAGGCGCCGGAGCGGTCCGTCGTCCT
CATCTCCGCCGGCGCCAGCCACTCCGTCGCCCTGCTCAGCGGCGGGGTGGTGTGCTCGTG
GGGGCGCGGCGAGGACGGGCAGCTGGGGCACGGCGACGCGGAGGACCGGCCGGTGCCGAC
GGTGCTGACGGCGGCGTTCGACGACGCGCCGGGGGGCGTCGCCTCCGTCGTCATCTGCGG
CGCCGACCACACCACCGCCTACTCCGACGAGGAGCTGCAGCTCTACAGCTGGGGATGGGG
CGACTTCGGGAGGCTGGGTCACGGCAACTCCAGCGACGTGTTCAACCCGCAGCCCATCCA
GGCGCTCCAGGGCGTCCGGATCACCCAGATCGCCTGCGGCGACAGCCACTGCCTCGCCGT
CACCGTCGCCGGCCATGTCCACAGCTGGGGACGCAATCAAAATGGTCAGCTTGGCCTCGG
AAACACCGAGGACTCCTTGCTCCCACAAAAGATTCAAGCTTTTGAGGGTGTCCGTGTAAA
AATGATTGCTGCTGGTGCCGAGCACACCGCTGCTGTAACAGAAGATGGTGATCTCTACGG
TTGGGGCTGGGGTCGGTATGGCAACTTGGGACTAGGCGATCGCGATGACCGCTTAATCCC
AGAAAAAGTTTCTTCTGTGAATGGTCAAAAGATGGTGCTTGTAGCGTGCGGGTGGCGCCA
TACCATCACCGTGTCCTCCTCCGGTAGCATCTACACATATGGATGGAGCAAGTATGGTCA
GCTAGGGCATGGTGATTTTGAGGATCACCTGGTTCCACACAAGTTGGAAGCATTGAAGGA
TACTACTATATCTCAAATTTCAGGTGGGTGGAGGCATACAATGGCACTTGCAGCAGATGG
GAAACTCTATGGATGGGGATGGAACAAGTTTGGACAAGTCGGTGTTGGCGATAATGAAGA
TCACTGCTCCCCGGTGCAGGTCAATTTTCCAAACGAACAGAAAGTTGTTCAAGTTGCTTG
TGGATGGAGGCACACTCTTGCCCTGACAGAAGCCAAAAATGTTTTCTCATGGGGAAGGGG
CACCAGTGGACAGCTTGGCCATGGTGAAATAGTTGATAGGAACATACCCAAGATGATCGA
TGCCTTGAGCTCGGATGGATCAGCTTGCAAGCAGCTGGAATCATCAAAAGCCGTCCCAAT
GTCAGCTAAAGTTTGGGTCTCGCCATCAGAGCGATATGCCATCGTGCCGGATGAGAAGGC
TGGAAAAGGCATCCCTGCTGGCAATGGAACAGAGACTCATGTGCCCCAAGGAGATGTGAA
GAGGATGCGCGTCTGATTCAGCAACATATACGATCCAGTGCTCTTCTTCCACTTGATATC
CTCTATTAGTTAACCTTAGAATTAGCATCATATATACATATAATAACCTTGGGGCAGCAT
TTATCCTCTACCATCTTATGACATATGCTGCCCAGTCTTTAATTAGTGTGTTGCCTTTTC
ATTTCTTAAAATAATCAGTGATATTATTCACAGTGAGGTTGGTCATGTATGACAGTATGA
GTAACTATGGACTGTCATAGGTATCACCATGGGAAAAAAATCAGTCAGTTTATTATTCTG
CTTGGCATTGC