Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os02t0552000-02
CDS Infomation	cds chromosome:IRGSP-1.0:2:20811365:20815581:1 gene:Os02g0552000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Transmembrane protein TM9SF3 (Fragment). (Os02t0552000-01);Similar to Transmembrane protein TM9SF3 (Fragment). (Os02t0552000-02)
Sequence	ATGGCCTCCGCTGCCGCCCACGCGGCCACCGCCACCGCCGCCGCCGTCCTCCTCGTCGTC TTCCTCGCCCCCCTTGCCGCCGCCTCCGACTCCGACCACAAGTACCAATCGGAGGAGAAG GTTATGCTCTGGGTGAACAAGGTTGGCCCGTACAACAACCCACAGGAAACTTACAACTAC TACAGCCTTCCGTTTTGCCATCCGTCCAATAACCCCGTGCATAAATGGGGAGGGCTTGGG GAGGTTCTCGGTGGAAATGAGCTGATTGACAGCCAGATCGACATAAAGTTTGGAAGGGAT GTTGACAAGGGTACCATTTGTTCAATTGAACTTGATCCTGACAAGGCCAAACAGTTATCT GATGCGATTGAGAGTTCATATTGGTTTGAATTCTTCATTGATGATTTGCCTCTATGGGGT TTTGTTGGAGAGGCAGACAGAAATAGCGATAACAAATATTTCCTTTTCACTCACAAGAAC ATCGTCATCAGATACAATGGCAATCAGATTATTCATGTTAATCTTACTCAAGAAAGTCCA AAGCTTATTGATGCGGGTAAGGCATTGGATATGACATATTCTGTCAAGTGGGAACCAACC AATGTAACATTTGCTCACCGCTTTGATGTATACCTTGACTACCCTTTCTTTGAACACCAG ATCCATTGGTTCTCAATCTTCAATTCTTTCATGATGGTTATCTTTCTCACTGGGCTAGTG TCAATGATTTTGATGCGCACTCTAAGAAATGACTATGCAAAGTATGCCCGCGACGATGAT GATCTTGAAACTCTGGAAAGAGATGTCAGTGAAGAATCTGGATGGAAGCTTGTCCATGGG GATGTTTTCCGGCCTCCTCGCAGTTTGGCTCTTCTTTCAGCCCTTGTTGGTGTTGGCACA CAGTTGTCTGCTCTTATTCTGCTAGTGATTTTGTTGGCAATCATCGGAATGCTGTATATT GGGCGAGGAGCTATTGTCACAACATTCATTGTTTGTTATGCCCTTACTTCATTCATCTCT GGATATGTCAGTGGTGCACTTTATTCACGGCATGGGGGGAAAAACTGGATCAAGGCAATG ATTATGACAGCATCACTATTTCCGTTTATGTGCTTTGGAATTGGCCTAGTGCTTAACACA ATCGCTATATTCTATCGATCATTAGCTGCCATACCATTTGGTACTATGGTGGTTGTGTTC ATCCTGTGGGCCTTCATATCTTTCCCTCTTGCTCTTTTGGGAACTGTTGTTGGTAGAAAC TGGAGTGGTGCCCCAAATAATCCATGCAGAGTAAAGACTATTCCTCGCCCTATCCCTGAG AAGAAATGGTACCTCACGCCTTCTGTCATTGCCCTCATGGGAGGACTGCTTCCTTTTGGT AGCATCTTCATTGAGATGTACTTTGTCTTCACATCATTTTGGAACTACAAGGTGTACTAT GTATATGGGTTCATGTTGCTAGTCTTTTTGATCCTCATAATTGTCACCATCTGTGTAACA ATCGTTGGTACATATTTCCTGCTGAATGCGGAGAACTACCACTGGCAGTGGACTTCATTC TTCTCTGCTGCTTCTACTGCCGTCTATGTTTACCTCTACTCCGTATATTATTACCATGTG AAGACCAAGATGTCAGGATTCTTTCAGACAAGTTTCTACTTCGGCTACACTCTTATGTTC TGCCTAGGTTTAGGAACACTCTGCGGTGCTGTCGGGTATCTTGGATCGACACTGTTTGTG AGAAGGATCTACAGGAACATAAAGTGTGACTAA

Peptide Sequence

PEP ID	Os02t0552000-02
PEP Infomation	pep chromosome:IRGSP-1.0:2:20811365:20815581:1 gene:Os02g0552000 transcript:Os02t0552000-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Transmembrane protein TM9SF3 (Fragment). (Os02t0552000-01);Similar to Transmembrane protein TM9SF3 (Fragment). (Os02t0552000-02)
Sequence	MASAAAHAATATAAAVLLVVFLAPLAAASDSDHKYQSEEKVMLWVNKVGPYNNPQETYNY YSLPFCHPSNNPVHKWGGLGEVLGGNELIDSQIDIKFGRDVDKGTICSIELDPDKAKQLS DAIESSYWFEFFIDDLPLWGFVGEADRNSDNKYFLFTHKNIVIRYNGNQIIHVNLTQESP KLIDAGKALDMTYSVKWEPTNVTFAHRFDVYLDYPFFEHQIHWFSIFNSFMMVIFLTGLV SMILMRTLRNDYAKYARDDDDLETLERDVSEESGWKLVHGDVFRPPRSLALLSALVGVGT QLSALILLVILLAIIGMLYIGRGAIVTTFIVCYALTSFISGYVSGALYSRHGGKNWIKAM IMTASLFPFMCFGIGLVLNTIAIFYRSLAAIPFGTMVVVFILWAFISFPLALLGTVVGRN WSGAPNNPCRVKTIPRPIPEKKWYLTPSVIALMGGLLPFGSIFIEMYFVFTSFWNYKVYY VYGFMLLVFLILIIVTICVTIVGTYFLLNAENYHWQWTSFFSAASTAVYVYLYSVYYYHV KTKMSGFFQTSFYFGYTLMFCLGLGTLCGAVGYLGSTLFVRRIYRNIKCD

Transcript Sequence

Transcript ID	Os02t0552000-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:2:20811365:20815581:1 gene:Os02g0552000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Transmembrane protein TM9SF3 (Fragment). (Os02t0552000-01);Similar to Transmembrane protein TM9SF3 (Fragment). (Os02t0552000-02)
Sequence	AATAGGAGGAGCAGAGAGGAGAGAGCCACTGCACCGCGCGTCCGCCCGCGCTCCCTCCCT CTCCTCTCCTCGCACTCGCCGTCCCTCCCAATGGCCTCCGCTGCCGCCCACGCGGCCACC GCCACCGCCGCCGCCGTCCTCCTCGTCGTCTTCCTCGCCCCCCTTGCCGCCGCCTCCGAC TCCGACCACAAGTACCAATCGGAGGAGAAGGTTATGCTCTGGGTGAACAAGGTTGGCCCG TACAACAACCCACAGGAAACTTACAACTACTACAGCCTTCCGTTTTGCCATCCGTCCAAT AACCCCGTGCATAAATGGGGAGGGCTTGGGGAGGTTCTCGGTGGAAATGAGCTGATTGAC AGCCAGATCGACATAAAGTTTGGAAGGGATGTTGACAAGGGTACCATTTGTTCAATTGAA CTTGATCCTGACAAGGCCAAACAGTTATCTGATGCGATTGAGAGTTCATATTGGTTTGAA TTCTTCATTGATGATTTGCCTCTATGGGGTTTTGTTGGAGAGGCAGACAGAAATAGCGAT AACAAATATTTCCTTTTCACTCACAAGAACATCGTCATCAGATACAATGGCAATCAGATT ATTCATGTTAATCTTACTCAAGAAAGTCCAAAGCTTATTGATGCGGGTAAGGCATTGGAT ATGACATATTCTGTCAAGTGGGAACCAACCAATGTAACATTTGCTCACCGCTTTGATGTA TACCTTGACTACCCTTTCTTTGAACACCAGATCCATTGGTTCTCAATCTTCAATTCTTTC ATGATGGTTATCTTTCTCACTGGGCTAGTGTCAATGATTTTGATGCGCACTCTAAGAAAT GACTATGCAAAGTATGCCCGCGACGATGATGATCTTGAAACTCTGGAAAGAGATGTCAGT GAAGAATCTGGATGGAAGCTTGTCCATGGGGATGTTTTCCGGCCTCCTCGCAGTTTGGCT CTTCTTTCAGCCCTTGTTGGTGTTGGCACACAGTTGTCTGCTCTTATTCTGCTAGTGATT TTGTTGGCAATCATCGGAATGCTGTATATTGGGCGAGGAGCTATTGTCACAACATTCATT GTTTGTTATGCCCTTACTTCATTCATCTCTGGATATGTCAGTGGTGCACTTTATTCACGG CATGGGGGGAAAAACTGGATCAAGGCAATGATTATGACAGCATCACTATTTCCGTTTATG TGCTTTGGAATTGGCCTAGTGCTTAACACAATCGCTATATTCTATCGATCATTAGCTGCC ATACCATTTGGTACTATGGTGGTTGTGTTCATCCTGTGGGCCTTCATATCTTTCCCTCTT GCTCTTTTGGGAACTGTTGTTGGTAGAAACTGGAGTGGTGCCCCAAATAATCCATGCAGA GTAAAGACTATTCCTCGCCCTATCCCTGAGAAGAAATGGTACCTCACGCCTTCTGTCATT GCCCTCATGGGAGGACTGCTTCCTTTTGGTAGCATCTTCATTGAGATGTACTTTGTCTTC ACATCATTTTGGAACTACAAGGTGTACTATGTATATGGGTTCATGTTGCTAGTCTTTTTG ATCCTCATAATTGTCACCATCTGTGTAACAATCGTTGGTACATATTTCCTGCTGAATGCG GAGAACTACCACTGGCAGTGGACTTCATTCTTCTCTGCTGCTTCTACTGCCGTCTATGTT TACCTCTACTCCGTATATTATTACCATGTGAAGACCAAGATGTCAGGATTCTTTCAGACA AGTTTCTACTTCGGCTACACTCTTATGTTCTGCCTAGGTTTAGGAACACTCTGCGGTGCT GTCGGGTATCTTGGATCGACACTGTTTGTGAGAAGGATCTACAGGAACATAAAGTGTGAC TAAAAATTGACCCCGGTTTAGACAGATGGGGCGAAAAACTTTGTATGTGTGGCTTGTTCC GTGAAGTGATCAGCCATGTTTTGGTGGCCAAGAAGCCAGGGCAGTTTATGGAGTACAAAC GTTCTTCGGCGACATTGCTGGGATGCCATGGTTTTTGTTTTCTTGTCCCTTTTGTTCTCT TTGATCCCCCTCTCGGTGCCACAATTTTCATGTTCAACTAGCCATATATAGCTGCGATCA TAGTTTAGATGTTAGTATATACCAGAGTTGTTATTCTTGAGCCTCATATCTGTGTTGCTT CACTTAAAGCTGTAAGATCCATGACATTTGTTGACCTTTAATGATGAAAACATCTCCGAA AGACATCATTTTCAGATTT