Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0550400-01
CDS Infomation

cds chromosome:IRGSP-1.0:2:20703718:20704907:-1 gene:Os02g0550400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tetratricopeptide-like helical domain containing protein. (Os02t0550400-01)
Sequence

ATGGCGGAGGCCGCCGCCGCCGCGTCCAACTCCACCCCCGCCTCGCCTCCTCCTCCGCCC
GCCGCCGCCGCCGCGCTCGGCCTCCCCGACCTCTCCGTGCCCTACGATCTGGCGACGCGC
GGGCAGTGGAAGTCGCTGCTCTCCCACCTCGACGACGCGTCGCACCCGCGGCACCGCCTC
CTCCTCTCCGCGCTCTCCGCCCTCTCGCTCGCCAAGCTCCGCCGCTACGCGGACGCCGCG
GCGCTCATCGCCTCGCTCCGCCCGGACCCGGGCTGCCCGCCGCCGCCCTTCCTCCTCCGC
CTCCTCCACGCCCTGCTCCCGCTCTTCCTCCCCGCCGACCGCCCCCTCGCCCTCGACCGC
CTCTACACCCTCCTCTCCTCCGTCCGCGCCCGCCCCGACGCCTCCCACCCGGAGTGGCGC
CGCCGCGAGTCCCTCGTCACGTCCCTCCTCGCCGCCGACCACCTCGCCCACCGCGAGTTC
GACGTCGCCCTCGCGCTCCTCGCGTCCGTCGCGGCGCTGGACCCGGGCAACCCGGCGGTC
CTCTCCCGCCTCGGCTACGCCCACCTCCAGATCGGCAACCTCGCCGCTGCCGCGGCCGCG
TTCCGCCACGTGGAGTCGGTGGCCGGCGGCGACCCGGCCCACGCCAGCCTCCTCGCCCGC
AACCGCGCGCTGGAGTGCGTGGTGGCCAAGGACTACGCGGCGGCGGTGCGGGAGTACGAG
CGGTGCATCGAGGCGGACGCCGCGGACGCGGTGGCCGTGAACAACAAGGCGCTGTGCCTC
ATGTACTCGCGCGACCTCGGCGACGCGATCAAGGTGCTCGAGGCGGCGCTGGAGGGCCAC
CCGACGGCGGCGTTGAACGAGACGGTGGTGGTGAACCTGTGCAGCATGTACGAGCTCGCC
TTCGTCAACCACGCCGACGTCAAGCGCAGCCTCACCGACTGGATCGCCAGGGTCGCCCCC
GACGACTTCGACCCCTCCTGCACTCGCATGTAG

Peptide Sequence

PEP ID

Os02t0550400-01
PEP Infomation

pep chromosome:IRGSP-1.0:2:20703718:20704907:-1 gene:Os02g0550400 transcript:Os02t0550400-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tetratricopeptide-like helical domain containing protein. (Os02t0550400-01)
Sequence

MAEAAAAASNSTPASPPPPPAAAAALGLPDLSVPYDLATRGQWKSLLSHLDDASHPRHRL
LLSALSALSLAKLRRYADAAALIASLRPDPGCPPPPFLLRLLHALLPLFLPADRPLALDR
LYTLLSSVRARPDASHPEWRRRESLVTSLLAADHLAHREFDVALALLASVAALDPGNPAV
LSRLGYAHLQIGNLAAAAAAFRHVESVAGGDPAHASLLARNRALECVVAKDYAAAVREYE
RCIEADAADAVAVNNKALCLMYSRDLGDAIKVLEAALEGHPTAALNETVVVNLCSMYELA
FVNHADVKRSLTDWIARVAPDDFDPSCTRM

Transcript Sequence

Transcript ID

Os02t0550400-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:20703718:20704907:-1 gene:Os02g0550400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tetratricopeptide-like helical domain containing protein. (Os02t0550400-01)
Sequence

CCGATCCAGCCATGGCGGAGGCCGCCGCCGCCGCGTCCAACTCCACCCCCGCCTCGCCTC
CTCCTCCGCCCGCCGCCGCCGCCGCGCTCGGCCTCCCCGACCTCTCCGTGCCCTACGATC
TGGCGACGCGCGGGCAGTGGAAGTCGCTGCTCTCCCACCTCGACGACGCGTCGCACCCGC
GGCACCGCCTCCTCCTCTCCGCGCTCTCCGCCCTCTCGCTCGCCAAGCTCCGCCGCTACG
CGGACGCCGCGGCGCTCATCGCCTCGCTCCGCCCGGACCCGGGCTGCCCGCCGCCGCCCT
TCCTCCTCCGCCTCCTCCACGCCCTGCTCCCGCTCTTCCTCCCCGCCGACCGCCCCCTCG
CCCTCGACCGCCTCTACACCCTCCTCTCCTCCGTCCGCGCCCGCCCCGACGCCTCCCACC
CGGAGTGGCGCCGCCGCGAGTCCCTCGTCACGTCCCTCCTCGCCGCCGACCACCTCGCCC
ACCGCGAGTTCGACGTCGCCCTCGCGCTCCTCGCGTCCGTCGCGGCGCTGGACCCGGGCA
ACCCGGCGGTCCTCTCCCGCCTCGGCTACGCCCACCTCCAGATCGGCAACCTCGCCGCTG
CCGCGGCCGCGTTCCGCCACGTGGAGTCGGTGGCCGGCGGCGACCCGGCCCACGCCAGCC
TCCTCGCCCGCAACCGCGCGCTGGAGTGCGTGGTGGCCAAGGACTACGCGGCGGCGGTGC
GGGAGTACGAGCGGTGCATCGAGGCGGACGCCGCGGACGCGGTGGCCGTGAACAACAAGG
CGCTGTGCCTCATGTACTCGCGCGACCTCGGCGACGCGATCAAGGTGCTCGAGGCGGCGC
TGGAGGGCCACCCGACGGCGGCGTTGAACGAGACGGTGGTGGTGAACCTGTGCAGCATGT
ACGAGCTCGCCTTCGTCAACCACGCCGACGTCAAGCGCAGCCTCACCGACTGGATCGCCA
GGGTCGCCCCCGACGACTTCGACCCCTCCTGCACTCGCATGTAGGGGAAATTGTTGGAAT
TCTGTTCTTCAAATTCGCTTGAATTTGTGTGAAAGATTTGCTGAAATTGGGATGTACAAT
TTGGGGGTTAGCAAACAATGGGTTTCAGTTGATTGTCCTACCTGGGATCAATAGCTTTCT
GTTGTTGCTCAATTAATATCGATATATTACTCTTGTGAATTTCATTACTT