Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0538700-02
CDS Infomation

cds chromosome:IRGSP-1.0:2:19954579:19955629:-1 gene:Os02g0538700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Harpin-induced 1 domain containing protein. (Os02t0538700-01);Harpin-induced 1 domain containing protein. (Os02t0538700-02)
Sequence

ATGAGCAAGGAGAAGCACCACAAGCGGGAGCACCACCTCCGGCGATGCTGCGGCGGGATG
GCGGCGTGCATCCTGGCGCTGGTCCTCGTCGTCGGCTTCATCGCGCTCGTCGTCTACCTC
GCGCTCCGCCCCTCCAAGCCGTCCTTCTACCTGCAGGACCTCCAGCTCCGCTCCGTCGAC
CTCGGCGACCCCTCCCTCTCCGCCACCGCGCAGGTCACCCTCGCCTCCCGCAACCCCAAT
GACCACGTCGGCGTCCACTACCGCCGCCTCGACGTCTTCGTCACCTACCGCGACGAACCC
GTCACGGTGCCCGTCTCCCTCCCGCCGACCTACCAGGGCCACCGCGACGTCACCATCTGG
TCGCCCGTGCTCTCCGGCGAGTCCGTCCCCGTGGCGGGCTTCGTCGCCGACGCGCTCAGG
CAGGACGTCGCCGCCGGGTACGTCGCGCTGCAGGTGAAGGTCGACGGCCGCGTCAAGTGG
AAGGTCGGCAGCTGGGTCTCCGGCAGCTACCACCTCTTTGTCAGCTGCCCCGCCATGCTC
GCCTCCGCCGGACCAGGCGGCGTCGGCCCCATGCCTCTCGGCGGCGCCTCCGCCGCCGTC
GTGAACGGCACCGGCGCCGGCGCCGTCGCGTCGCTCAGGTTCACGCAGCCGACAGGGTGC
AGCGTCGAGGTGTGA

Peptide Sequence

PEP ID

Os02t0538700-02
PEP Infomation

pep chromosome:IRGSP-1.0:2:19954579:19955629:-1 gene:Os02g0538700 transcript:Os02t0538700-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Harpin-induced 1 domain containing protein. (Os02t0538700-01);Harpin-induced 1 domain containing protein. (Os02t0538700-02)
Sequence

MSKEKHHKREHHLRRCCGGMAACILALVLVVGFIALVVYLALRPSKPSFYLQDLQLRSVD
LGDPSLSATAQVTLASRNPNDHVGVHYRRLDVFVTYRDEPVTVPVSLPPTYQGHRDVTIW
SPVLSGESVPVAGFVADALRQDVAAGYVALQVKVDGRVKWKVGSWVSGSYHLFVSCPAML
ASAGPGGVGPMPLGGASAAVVNGTGAGAVASLRFTQPTGCSVEV

Transcript Sequence

Transcript ID

Os02t0538700-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:19954579:19955629:-1 gene:Os02g0538700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Harpin-induced 1 domain containing protein. (Os02t0538700-01);Harpin-induced 1 domain containing protein. (Os02t0538700-02)
Sequence

ATATCTAACGCCCCTCTCTCTCTCTCTCTCTCACTCAGCAACAGCTCGCAGCTCACTCTC
TCACTCTACTACTCGTAGCTAAGCTAGCTCGCGCCGCCGCCGCCGCCGTCGCCGCCGCCA
TGAGCAAGGAGAAGCACCACAAGCGGGAGCACCACCTCCGGCGATGCTGCGGCGGGATGG
CGGCGTGCATCCTGGCGCTGGTCCTCGTCGTCGGCTTCATCGCGCTCGTCGTCTACCTCG
CGCTCCGCCCCTCCAAGCCGTCCTTCTACCTGCAGGACCTCCAGCTCCGCTCCGTCGACC
TCGGCGACCCCTCCCTCTCCGCCACCGCGCAGGTCACCCTCGCCTCCCGCAACCCCAATG
ACCACGTCGGCGTCCACTACCGCCGCCTCGACGTCTTCGTCACCTACCGCGACGAACCCG
TCACGGTGCCCGTCTCCCTCCCGCCGACCTACCAGGGCCACCGCGACGTCACCATCTGGT
CGCCCGTGCTCTCCGGCGAGTCCGTCCCCGTGGCGGGCTTCGTCGCCGACGCGCTCAGGC
AGGACGTCGCCGCCGGGTACGTCGCGCTGCAGGTGAAGGTCGACGGCCGCGTCAAGTGGA
AGGTCGGCAGCTGGGTCTCCGGCAGCTACCACCTCTTTGTCAGCTGCCCCGCCATGCTCG
CCTCCGCCGGACCAGGCGGCGTCGGCCCCATGCCTCTCGGCGGCGCCTCCGCCGCCGTCG
TGAACGGCACCGGCGCCGGCGCCGTCGCGTCGCTCAGGTTCACGCAGCCGACAGGGTGCA
GCGTCGAGGTGTGAGTCACAAATTTGAGTAGCGGCTAGTGGCAATATGGTAATTAATTAA
GTTCATCGGTCGCGTTAATCCGCAAGCTGTTAATTTTTTTTTTGTGTTCATGTAGCTCAT
GCATACTCTATGTGAGAGAATAAAGTTACGTACGTTCATATGTATACCATTGCAACACAT
TAATTTCCTATATGAAGTGTACTAGTATAATTTCGTTGCTGTAATTTTTGAATTATTGTT
AATAATATATATTCAGGTAATATTTCTCGAG