Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0537500-01
CDS Infomation

cds chromosome:IRGSP-1.0:2:19868200:19873307:-1 gene:Os02g0537500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:E2F transcription factor 1 description:Similar to E2F homolog. (Os02t0537500-01)
Sequence

ATGGCGGGGAGTGGGAGGCCGCCGGCGGCGCAGAAGAAGATCCTGCAGTCGCTGCGCCCG
CCGCTGCCGTTCGCCGCCTCGTCGAGGTCGCCCTTCGCGGCGCCCAACGACTACCACCGC
TTCCCCGCTGGTGGCGCGGCGGCGGCGGCGGCGTCTGGTTCGGGTGGCATCGGCGCGGGC
GGTGCTGGCGGCGGCGGCGATATCGAGGAGGGGCTGGTCATCCGGACGCCGCAAAAAAGA
AAAGCACCAGAAGAAAGTGATGTTGCTGAGTCTAGCGACTGTATGATTACTAGCCCTGGA
TTTGCTGTCAGTCCAATGCTCACTCCAGTCTCTGGGAAAGCTGTTAAGACTTCCAAGTCA
AAGACTAAGAACAACAAAGCTGGGCCTCAGACACCTACATCAAATGTTGGTTCACCACTT
AATCCCCCAACTCCTGTTGGTACATGCCGTTATGACAGTTCGTTAGGGCTTCTCACAAAG
AAGTTCATAAATTTGCTGAAGCAGGCTCCGGATGGCATTCTAGATTTGAATAATGCTGCA
GAAACACTAGAGGTTCAAAAACGGCGTATATATGATATTACCAATGTACTTGAAGGAATA
GGGTTGATTGAAAAGACACTCAAGAACAGAATCCGTTGGAAGGGCTTGGATGATTCAGGA
GTGGAATTAGATAATGGTCTTTCAGCTTTGCAGGCAGAAGTTGAAAATCTTAGTCTGAAG
GAGCAAGCATTAGATGAGCGCATAAGTGATATGCGTGAAAAACTAAGAGGTTTAACTGAA
GATGAAAACAATCAAAGATGGCTCTATGTGACAGAAGATGATATCAAGGGATTACCCTGC
TTTCAGAATGAAACACTAATTGCAATAAAAGCTCCTCATGGCACTACACTTGAAGTCCCA
GATCCTGACGAGGCTGGTGATTATCTCCAGAGAAGATATAGAATCGTATTAAGAAGTACA
ATGGGCCCAATAGATGTCTACTTAGTTAGTCAATTTGATGAGAAATTTGAGGACTTGGGT
GGGGGTGCAACACCATCAGGGCATGCAAATGTACCAAAACATCAACCTACTGAAGTCTTC
AATACAACAAATGCTGGGGTTGGGCAATGTAGCAACTCAGTTGCTGTGGACAATAATATT
CAGCACAGCCAGACGATTCCTCAGGATCCTAGTGCTTCACATGATTTTGGAGGAATGACA
AGGATTATCCCTTCAGATATTGATACTGATGCTGATTACTGGCTCATATCAGAAGGGGAT
GTCAGCATTACTGATATGTGGAAAACAGCACCAGATGTGCAGTGGGATGAGAGCCTGGAT
ACGGATGTCTTCCTATCTGAAGACGTTAGAACGCCAAGTTCACACAATCAGCAGCCATCT
GCAGTGGGCGGGCCACAGATGCAGGTCTCAGACATGCATAAACCCTAG

Peptide Sequence

PEP ID

Os02t0537500-01
PEP Infomation

pep chromosome:IRGSP-1.0:2:19868200:19873307:-1 gene:Os02g0537500 transcript:Os02t0537500-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:E2F transcription factor 1 description:Similar to E2F homolog. (Os02t0537500-01)
Sequence

MAGSGRPPAAQKKILQSLRPPLPFAASSRSPFAAPNDYHRFPAGGAAAAAASGSGGIGAG
GAGGGGDIEEGLVIRTPQKRKAPEESDVAESSDCMITSPGFAVSPMLTPVSGKAVKTSKS
KTKNNKAGPQTPTSNVGSPLNPPTPVGTCRYDSSLGLLTKKFINLLKQAPDGILDLNNAA
ETLEVQKRRIYDITNVLEGIGLIEKTLKNRIRWKGLDDSGVELDNGLSALQAEVENLSLK
EQALDERISDMREKLRGLTEDENNQRWLYVTEDDIKGLPCFQNETLIAIKAPHGTTLEVP
DPDEAGDYLQRRYRIVLRSTMGPIDVYLVSQFDEKFEDLGGGATPSGHANVPKHQPTEVF
NTTNAGVGQCSNSVAVDNNIQHSQTIPQDPSASHDFGGMTRIIPSDIDTDADYWLISEGD
VSITDMWKTAPDVQWDESLDTDVFLSEDVRTPSSHNQQPSAVGGPQMQVSDMHKP

Transcript Sequence

Transcript ID

Os02t0537500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:19868200:19873307:-1 gene:Os02g0537500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:E2F transcription factor 1 description:Similar to E2F homolog. (Os02t0537500-01)
Sequence

CTTCCCTCCTCTCTCTCTTCGATTCCCCTTTCCCCCCCTCACCCACCCACCTCCACGCCC
CCGCCGCCGGCCGGCCGGCCGGAACCCTAGCTCCGGCGAGCCCCTCCCACCCCCCGGCCC
CGGGCCTGGCTCCACCCGACGCCGCGCCCCTCGATCGGGTCCCTTGCGGGGGACCGCGGC
GTCGAGGAGGGCGATCGCGAGATCGGGGGAGGTTGCTGCTGCTGCTGGGCGGGTGGGCGG
AGGGGAGGGGGTGAGGGCTGCCATGGCGGGGAGTGGGAGGCCGCCGGCGGCGCAGAAGAA
GATCCTGCAGTCGCTGCGCCCGCCGCTGCCGTTCGCCGCCTCGTCGAGGTCGCCCTTCGC
GGCGCCCAACGACTACCACCGCTTCCCCGCTGGTGGCGCGGCGGCGGCGGCGGCGTCTGG
TTCGGGTGGCATCGGCGCGGGCGGTGCTGGCGGCGGCGGCGATATCGAGGAGGGGCTGGT
CATCCGGACGCCGCAAAAAAGAAAAGCACCAGAAGAAAGTGATGTTGCTGAGTCTAGCGA
CTGTATGATTACTAGCCCTGGATTTGCTGTCAGTCCAATGCTCACTCCAGTCTCTGGGAA
AGCTGTTAAGACTTCCAAGTCAAAGACTAAGAACAACAAAGCTGGGCCTCAGACACCTAC
ATCAAATGTTGGTTCACCACTTAATCCCCCAACTCCTGTTGGTACATGCCGTTATGACAG
TTCGTTAGGGCTTCTCACAAAGAAGTTCATAAATTTGCTGAAGCAGGCTCCGGATGGCAT
TCTAGATTTGAATAATGCTGCAGAAACACTAGAGGTTCAAAAACGGCGTATATATGATAT
TACCAATGTACTTGAAGGAATAGGGTTGATTGAAAAGACACTCAAGAACAGAATCCGTTG
GAAGGGCTTGGATGATTCAGGAGTGGAATTAGATAATGGTCTTTCAGCTTTGCAGGCAGA
AGTTGAAAATCTTAGTCTGAAGGAGCAAGCATTAGATGAGCGCATAAGTGATATGCGTGA
AAAACTAAGAGGTTTAACTGAAGATGAAAACAATCAAAGATGGCTCTATGTGACAGAAGA
TGATATCAAGGGATTACCCTGCTTTCAGAATGAAACACTAATTGCAATAAAAGCTCCTCA
TGGCACTACACTTGAAGTCCCAGATCCTGACGAGGCTGGTGATTATCTCCAGAGAAGATA
TAGAATCGTATTAAGAAGTACAATGGGCCCAATAGATGTCTACTTAGTTAGTCAATTTGA
TGAGAAATTTGAGGACTTGGGTGGGGGTGCAACACCATCAGGGCATGCAAATGTACCAAA
ACATCAACCTACTGAAGTCTTCAATACAACAAATGCTGGGGTTGGGCAATGTAGCAACTC
AGTTGCTGTGGACAATAATATTCAGCACAGCCAGACGATTCCTCAGGATCCTAGTGCTTC
ACATGATTTTGGAGGAATGACAAGGATTATCCCTTCAGATATTGATACTGATGCTGATTA
CTGGCTCATATCAGAAGGGGATGTCAGCATTACTGATATGTGGAAAACAGCACCAGATGT
GCAGTGGGATGAGAGCCTGGATACGGATGTCTTCCTATCTGAAGACGTTAGAACGCCAAG
TTCACACAATCAGCAGCCATCTGCAGTGGGCGGGCCACAGATGCAGGTCTCAGACATGCA
TAAACCCTAGGATCACAGGGGTTACAGAAGTGAAAAGATGACATCTGGAATTCCTGGAGC
GGTGTTTGTAGTGAAAAGTGAAAGCATGACAGCAAATGCTCATTGCCAAATTGTAAAGAG
CCGGGTGGTCTTCATCAGAATATCTGCATCTTCTCGAGACACCAAGTCCGTGCGAGAGAT
CAGGATGACACCATTCCGGATTCACATCTGCTGTGGAGGCTGGTGGCGTCAACTAACTTA
CCAGCCTGCTGTTTCAGCACCCTGCTTCAGTCGAACGGGAGTAAATCTTGCTGCTGCTTT
CGCTGTGAAGCCTGCTGCGGTGCTCATTAAGGCACTGATATATTTTTTGCATTCAAAACT
AACTAGTCATCAGCAAGGAAACGGTGGGCTTTGCTGTGCTCTGTCGAGTATTCTTTGAAA
ATTCTTTGTACATTGGGAGGTATAAGGGCATGCAGGGCTCGAGTTATTGGTTTGACGGGA
GCAATGAGCTGAGTTAATGATGTAACCGAGCCGTCTTTGTAAATTGTTCCATGCTCTTCC
TCAAATACAATGGATAGACTTTCATTTTGAGATATGATGCTTCAGTAGTCATTTGCTAGT
CACCATGGAGTGATGTGATATCTTTGCTACTGGTATGAACCTCAAAATGATACTCGCCGT
TAATTTTT