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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0533300-01
CDS Infomation

cds chromosome:IRGSP-1.0:2:19636276:19638854:1 gene:Os02g0533300 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ALPHA-CARBONIC ANHYDRASE 1 description:Carbonic anhydrase, CAH1-like domain containing protein. (Os02t0533300-01)
Sequence

ATGGGGACTGCTAAGAAAAGTGCAATCTTTGTTGCACTGCTGTGCACTCACATTCTTGTG
AACCATGCATGTGACAGTGATGTGGTATTTGGGTACAGTGGGAGTACTGGTCCAGAGCAT
TGGGGGAGCTTAAGTCCTAATTTCACAACGTGCTCAAAAGGGACGTACCAGTCCCCAATC
AACATTTTGAAAGATGACGCAGTTTACAACCCAAAGTTGGAGCCCCTTGAAATGGATTAT
ACTGCTGCAAACACTACCATTGTTGACAATGTCTTCAATATTGCGCTACGTTACAACGAC
ACTGCTGGGACTGTGAAGGTGGATGGGAAAAAGTATAAACTGAGGCAATTGCATTGGCAC
TCTCCCTCAGAGCACACCATCAATGGCCAAAGGTTTGCAGTGGAGCTCCACATGGTTCAC
CATTCTGATGATGGCAACATTACTGTCATTGCAGTCCTTTATCGACATGGGAAACCTGAT
CCATTTCTTTTTCAGATAAAGGATAAGTTGGCTGCATTATACTTAGAGGGCTGTAAAGCG
GAGAAAGGCGAACCTCTTCCTGTTGGACTCGTGGATATGAGGGAATTGAAGAAAGGCGCG
GATAGGTATTTCAGATACGTTGGATCCCTCACGACACCTCCATGCACCGAAAATGTTATC
TGGAACATTTTTGGAGAGATAAGAGAAATGACCAAAGAGCAGGCTGCTGCTTTGAGGGCC
CCTTTGCACGGGAGTTACAGGCACAACCGCAGGCCGACACAGCCACTCAATGGTCGCACC
GTGCAGCTCAATTACATGTAA

Peptide Sequence

PEP ID

Os02t0533300-01
PEP Infomation

pep chromosome:IRGSP-1.0:2:19636276:19638854:1 gene:Os02g0533300 transcript:Os02t0533300-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ALPHA-CARBONIC ANHYDRASE 1 description:Carbonic anhydrase, CAH1-like domain containing protein. (Os02t0533300-01)
Sequence

MGTAKKSAIFVALLCTHILVNHACDSDVVFGYSGSTGPEHWGSLSPNFTTCSKGTYQSPI
NILKDDAVYNPKLEPLEMDYTAANTTIVDNVFNIALRYNDTAGTVKVDGKKYKLRQLHWH
SPSEHTINGQRFAVELHMVHHSDDGNITVIAVLYRHGKPDPFLFQIKDKLAALYLEGCKA
EKGEPLPVGLVDMRELKKGADRYFRYVGSLTTPPCTENVIWNIFGEIREMTKEQAAALRA
PLHGSYRHNRRPTQPLNGRTVQLNYM

Transcript Sequence

Transcript ID

Os02t0533300-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:19636276:19638854:1 gene:Os02g0533300 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ALPHA-CARBONIC ANHYDRASE 1 description:Carbonic anhydrase, CAH1-like domain containing protein. (Os02t0533300-01)
Sequence

AAAACTGCAAGTACTTCTATAGTTCCTTGCACCTAATGATATGAGTTTATATTTCTGAAC
AGAGGATCAAATGATAAATGGGGACTGCTAAGAAAAGTGCAATCTTTGTTGCACTGCTGT
GCACTCACATTCTTGTGAACCATGCATGTGACAGTGATGTGGTATTTGGGTACAGTGGGA
GTACTGGTCCAGAGCATTGGGGGAGCTTAAGTCCTAATTTCACAACGTGCTCAAAAGGGA
CGTACCAGTCCCCAATCAACATTTTGAAAGATGACGCAGTTTACAACCCAAAGTTGGAGC
CCCTTGAAATGGATTATACTGCTGCAAACACTACCATTGTTGACAATGTCTTCAATATTG
CGCTACGTTACAACGACACTGCTGGGACTGTGAAGGTGGATGGGAAAAAGTATAAACTGA
GGCAATTGCATTGGCACTCTCCCTCAGAGCACACCATCAATGGCCAAAGGTTTGCAGTGG
AGCTCCACATGGTTCACCATTCTGATGATGGCAACATTACTGTCATTGCAGTCCTTTATC
GACATGGGAAACCTGATCCATTTCTTTTTCAGATAAAGGATAAGTTGGCTGCATTATACT
TAGAGGGCTGTAAAGCGGAGAAAGGCGAACCTCTTCCTGTTGGACTCGTGGATATGAGGG
AATTGAAGAAAGGCGCGGATAGGTATTTCAGATACGTTGGATCCCTCACGACACCTCCAT
GCACCGAAAATGTTATCTGGAACATTTTTGGAGAGATAAGAGAAATGACCAAAGAGCAGG
CTGCTGCTTTGAGGGCCCCTTTGCACGGGAGTTACAGGCACAACCGCAGGCCGACACAGC
CACTCAATGGTCGCACCGTGCAGCTCAATTACATGTAACCCCATAACGGTAATCCAAAAG
ATGCTTTATCCTGCGGCAGCTCATCTATCTGCAGATAATAATGTGCTTTAGTATGTACCC
AAGTTCAGGAATGTCAATGTAATCGGCGCCATGGACTGCAATAAAACCTTGTTCATTGTC
ATGGTTCACATC