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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os02t0531200-01
CDS Infomation

cds chromosome:IRGSP-1.0:2:19549737:19556064:1 gene:Os02g0531200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BASS4 description:Bile acid:sodium symporter family protein. (Os02t0531200-01)
Sequence

ATGGTAACCACCCACCACCTCTGCCTCCTCCGGTCGACCGTCCTCTCCGTTCCCGTCCGC
CTCCGTGCACCCCGGGCTCCCCCTCACCCCCGCCTGCCCACCGCCTCCGCCTCCGCCTCC
TCCTATCATGGGCCAACGCACCTCCGCCGCCTGCGGCCACTGCGCGCCGCCGCCGCCGCC
GCCGGAGGAGCCTCGCCGGATGGCGCTGATGGGGCCAAGCGCCCCGCGCCCGCGGCGGCG
TCTTCCTCGCTGGGAGCCGCGCTGGTCGGCTTCGCGCGTAGCAACTTCCTCCCGCTAGCT
CTAATTGCTGGGATTGCTCTGGCCCTCATGGATCCTACACTCGGATGCCTTGCTCACAAA
TATTCACTGTCAAAGTACAGCACCTTCGGGATATTCCTTATCTCAGGACTGACTCTGCGA
ACCAAGGAACTTGGTGCAGCACTAGAAGCTTGGCCTGCAGGGCTTTTTGGACTTGCCTCA
ATCTTGCTGTTTACACCCTTTTTGGCTCAGTTTATTATGCAAATTAAGTTCTTCCCTCAT
GAATTTATCACTGGGTTGGCTATGTTTTGTTGCATGCCAACAACATTATCAAGTGGAGTC
ACCTTAACTCAGCTTGTTGGTGGTAACACTGCTCTTGCTCTCGCAATGACGGCTATATCA
AACTTACTGGGCATTATGATTGTACCTCTTTCTCTTGCAAAGTACATTGGTGTTGGAGCT
GGGGTGTCTTTGCCCACAGAGAAACTATTTAAAAGTCTGGTTACAACCCTTCTTATCCCC
ATTATTTTAGGAAAGGTTGCTCGAGAAACATCAAAAGGTATTGCTGGCTTTGTTGATGGA
AATAAGCAGGGCTTTTCAGTTACAAGTGCTATTCTTCTCAGCTTAGTCCCATGGATACAA
GTAAGCAGATCAAGATCACTGCTCTTATCTGTTCAACCAAAAGCCTTTGCTGTTGCTGTC
ACTGTTGGAGTGCTTTTGCACTTTGCTCTGTTGGCTTTCAATGCTGCAGCATTGCATATC
TTGTCACGTCTTGAACAAAGAGGAGTGTCTGTCTTTGCAAGGAATGAGTATGCTCGAGCT
GTCATTTTAGTGGCCAGTCAGAAAACATTGCCAGTGCTGGTTGCCGTGGTTGAGCAGCTT
GGAGGTGCTCTCGGAGAATCAGGGTTGCTGGTAATCCCATGTGTTGCTGCACATATTAAC
CAGATTATTATCGACTCTATCATAGTAAATTGGTGGCGCCAAAGAGATCAACAATTTGCT
AATGCAAAATAA

Peptide Sequence

PEP ID

Os02t0531200-01
PEP Infomation

pep chromosome:IRGSP-1.0:2:19549737:19556064:1 gene:Os02g0531200 transcript:Os02t0531200-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BASS4 description:Bile acid:sodium symporter family protein. (Os02t0531200-01)
Sequence

MVTTHHLCLLRSTVLSVPVRLRAPRAPPHPRLPTASASASSYHGPTHLRRLRPLRAAAAA
AGGASPDGADGAKRPAPAAASSSLGAALVGFARSNFLPLALIAGIALALMDPTLGCLAHK
YSLSKYSTFGIFLISGLTLRTKELGAALEAWPAGLFGLASILLFTPFLAQFIMQIKFFPH
EFITGLAMFCCMPTTLSSGVTLTQLVGGNTALALAMTAISNLLGIMIVPLSLAKYIGVGA
GVSLPTEKLFKSLVTTLLIPIILGKVARETSKGIAGFVDGNKQGFSVTSAILLSLVPWIQ
VSRSRSLLLSVQPKAFAVAVTVGVLLHFALLAFNAAALHILSRLEQRGVSVFARNEYARA
VILVASQKTLPVLVAVVEQLGGALGESGLLVIPCVAAHINQIIIDSIIVNWWRQRDQQFA
NAK

Transcript Sequence

Transcript ID

Os02t0531200-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:2:19549737:19556064:1 gene:Os02g0531200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BASS4 description:Bile acid:sodium symporter family protein. (Os02t0531200-01)
Sequence

ACACACACGCCAGTCGCCGCCGGCTTTTGCTTCCTCCGCCTCCGCCTCGCGATGGTAACC
ACCCACCACCTCTGCCTCCTCCGGTCGACCGTCCTCTCCGTTCCCGTCCGCCTCCGTGCA
CCCCGGGCTCCCCCTCACCCCCGCCTGCCCACCGCCTCCGCCTCCGCCTCCTCCTATCAT
GGGCCAACGCACCTCCGCCGCCTGCGGCCACTGCGCGCCGCCGCCGCCGCCGCCGGAGGA
GCCTCGCCGGATGGCGCTGATGGGGCCAAGCGCCCCGCGCCCGCGGCGGCGTCTTCCTCG
CTGGGAGCCGCGCTGGTCGGCTTCGCGCGTAGCAACTTCCTCCCGCTAGCTCTAATTGCT
GGGATTGCTCTGGCCCTCATGGATCCTACACTCGGATGCCTTGCTCACAAATATTCACTG
TCAAAGTACAGCACCTTCGGGATATTCCTTATCTCAGGACTGACTCTGCGAACCAAGGAA
CTTGGTGCAGCACTAGAAGCTTGGCCTGCAGGGCTTTTTGGACTTGCCTCAATCTTGCTG
TTTACACCCTTTTTGGCTCAGTTTATTATGCAAATTAAGTTCTTCCCTCATGAATTTATC
ACTGGGTTGGCTATGTTTTGTTGCATGCCAACAACATTATCAAGTGGAGTCACCTTAACT
CAGCTTGTTGGTGGTAACACTGCTCTTGCTCTCGCAATGACGGCTATATCAAACTTACTG
GGCATTATGATTGTACCTCTTTCTCTTGCAAAGTACATTGGTGTTGGAGCTGGGGTGTCT
TTGCCCACAGAGAAACTATTTAAAAGTCTGGTTACAACCCTTCTTATCCCCATTATTTTA
GGAAAGGTTGCTCGAGAAACATCAAAAGGTATTGCTGGCTTTGTTGATGGAAATAAGCAG
GGCTTTTCAGTTACAAGTGCTATTCTTCTCAGCTTAGTCCCATGGATACAAGTAAGCAGA
TCAAGATCACTGCTCTTATCTGTTCAACCAAAAGCCTTTGCTGTTGCTGTCACTGTTGGA
GTGCTTTTGCACTTTGCTCTGTTGGCTTTCAATGCTGCAGCATTGCATATCTTGTCACGT
CTTGAACAAAGAGGAGTGTCTGTCTTTGCAAGGAATGAGTATGCTCGAGCTGTCATTTTA
GTGGCCAGTCAGAAAACATTGCCAGTGCTGGTTGCCGTGGTTGAGCAGCTTGGAGGTGCT
CTCGGAGAATCAGGGTTGCTGGTAATCCCATGTGTTGCTGCACATATTAACCAGATTATT
ATCGACTCTATCATAGTAAATTGGTGGCGCCAAAGAGATCAACAATTTGCTAATGCAAAA
TAAATTCAAAATGGGTAAAACAAAAAAAATAAGTAGCAAGTAACATAGAATCGTTTGGCA
ACGATGCCCTTTGAGTTTACCGCATATTAGTTTTTTATGATTCCGTAGGAAACAACAATG
AAACTATTTTTGTGTAGAAAGTTCATTGAGTTGCTTCCATGGAGCACTTTCTGTTATGCA
TC